Strain Fitness in Dechlorosoma suillum PS around Dsui_2234

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2233 and Dsui_2234 are separated by 260 nucleotidesDsui_2234 and Dsui_2235 are separated by 73 nucleotides Dsui_2233: Dsui_2233 - catalase/peroxidase HPI, at 2,375,338 to 2,377,518 _2233 Dsui_2234: Dsui_2234 - hypothetical protein, at 2,377,779 to 2,378,162 _2234 Dsui_2235: Dsui_2235 - hypothetical protein, at 2,378,236 to 2,379,120 _2235 Position (kb) 2377 2378 2379Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2376.791 kb on + strandat 2376.808 kb on - strandat 2376.868 kb on - strand, within Dsui_2233at 2376.921 kb on - strand, within Dsui_2233at 2377.053 kb on - strand, within Dsui_2233at 2377.224 kb on - strand, within Dsui_2233at 2377.239 kb on - strand, within Dsui_2233at 2377.286 kb on + strand, within Dsui_2233at 2377.288 kb on + strandat 2377.341 kb on - strandat 2377.358 kb on - strandat 2377.392 kb on + strandat 2377.416 kb on - strandat 2377.484 kb on - strandat 2377.485 kb on - strandat 2377.546 kb on - strandat 2377.559 kb on - strandat 2377.559 kb on - strandat 2377.657 kb on + strandat 2377.676 kb on + strandat 2377.684 kb on - strandat 2377.784 kb on - strandat 2377.911 kb on - strand, within Dsui_2234at 2377.936 kb on - strand, within Dsui_2234at 2378.035 kb on + strand, within Dsui_2234at 2378.072 kb on - strand, within Dsui_2234at 2378.165 kb on - strandat 2378.239 kb on + strandat 2378.292 kb on + strandat 2378.300 kb on - strandat 2378.353 kb on - strand, within Dsui_2235at 2378.537 kb on + strandat 2378.571 kb on - strandat 2378.604 kb on + strandat 2378.772 kb on - strand, within Dsui_2235at 2378.849 kb on - strand, within Dsui_2235at 2379.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,376,791 + +0.4
2,376,808 - +0.5
2,376,868 - Dsui_2233 0.70 +0.1
2,376,921 - Dsui_2233 0.73 +0.0
2,377,053 - Dsui_2233 0.79 +1.3
2,377,224 - Dsui_2233 0.86 -0.2
2,377,239 - Dsui_2233 0.87 -0.6
2,377,286 + Dsui_2233 0.89 -1.9
2,377,288 + -1.1
2,377,341 - -1.8
2,377,358 - -2.7
2,377,392 + -0.2
2,377,416 - +0.8
2,377,484 - -0.9
2,377,485 - -1.0
2,377,546 - +0.2
2,377,559 - -1.4
2,377,559 - -1.4
2,377,657 + -0.2
2,377,676 + -0.3
2,377,684 - -1.3
2,377,784 - +1.0
2,377,911 - Dsui_2234 0.34 +1.2
2,377,936 - Dsui_2234 0.41 +0.7
2,378,035 + Dsui_2234 0.67 +1.2
2,378,072 - Dsui_2234 0.76 +0.8
2,378,165 - -1.4
2,378,239 + +1.4
2,378,292 + -2.1
2,378,300 - +0.7
2,378,353 - Dsui_2235 0.13 -1.1
2,378,537 + +4.2
2,378,571 - +0.0
2,378,604 + -0.3
2,378,772 - Dsui_2235 0.61 -0.2
2,378,849 - Dsui_2235 0.69 +1.7
2,379,081 - -0.3

Or see this region's nucleotide sequence