Strain Fitness in Dechlorosoma suillum PS around Dsui_2041

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2039 and Dsui_2040 are separated by 26 nucleotidesDsui_2040 and Dsui_2041 are separated by 60 nucleotidesDsui_2041 and Dsui_2042 are separated by 20 nucleotides Dsui_2039: Dsui_2039 - OAH/OAS sulfhydrylase, at 2,158,129 to 2,159,415 _2039 Dsui_2040: Dsui_2040 - putative CoA-binding protein, at 2,159,442 to 2,159,900 _2040 Dsui_2041: Dsui_2041 - enoyl-CoA hydratase/carnithine racemase, at 2,159,961 to 2,160,746 _2041 Dsui_2042: Dsui_2042 - cystathionine beta-lyase/cystathionine gamma-synthase, at 2,160,767 to 2,161,945 _2042 Position (kb) 2159 2160 2161Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2158.965 kb on + strandat 2158.973 kb on - strand, within Dsui_2039at 2158.978 kb on - strand, within Dsui_2039at 2159.225 kb on - strand, within Dsui_2039at 2159.250 kb on - strand, within Dsui_2039at 2159.260 kb on + strand, within Dsui_2039at 2159.268 kb on - strand, within Dsui_2039at 2159.419 kb on - strandat 2159.429 kb on - strandat 2159.450 kb on + strandat 2159.450 kb on + strandat 2159.458 kb on - strandat 2159.608 kb on + strand, within Dsui_2040at 2159.615 kb on + strand, within Dsui_2040at 2159.719 kb on + strand, within Dsui_2040at 2159.854 kb on - strand, within Dsui_2040at 2159.872 kb on + strandat 2159.876 kb on + strandat 2159.880 kb on - strandat 2159.945 kb on + strandat 2159.951 kb on - strandat 2159.978 kb on - strandat 2160.064 kb on + strand, within Dsui_2041at 2160.110 kb on - strand, within Dsui_2041at 2160.117 kb on - strand, within Dsui_2041at 2160.119 kb on + strandat 2160.220 kb on - strand, within Dsui_2041at 2160.246 kb on - strand, within Dsui_2041at 2160.261 kb on + strandat 2160.269 kb on - strand, within Dsui_2041at 2160.277 kb on - strandat 2160.324 kb on - strand, within Dsui_2041at 2160.324 kb on - strandat 2160.460 kb on + strandat 2160.470 kb on + strandat 2160.506 kb on - strand, within Dsui_2041at 2160.592 kb on - strandat 2160.625 kb on + strand, within Dsui_2041at 2160.696 kb on - strandat 2160.765 kb on - strandat 2160.789 kb on - strandat 2160.789 kb on - strandat 2160.792 kb on + strandat 2160.792 kb on + strandat 2160.868 kb on + strandat 2160.876 kb on - strandat 2160.876 kb on - strandat 2160.996 kb on + strandat 2161.004 kb on - strandat 2161.041 kb on + strandat 2161.080 kb on + strandat 2161.173 kb on - strand, within Dsui_2042at 2161.211 kb on + strand, within Dsui_2042at 2161.305 kb on - strand, within Dsui_2042at 2161.401 kb on + strandat 2161.565 kb on - strand, within Dsui_2042at 2161.610 kb on + strand, within Dsui_2042at 2161.610 kb on + strandat 2161.636 kb on - strand, within Dsui_2042at 2161.674 kb on - strandat 2161.705 kb on - strand, within Dsui_2042

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,158,965 + +1.1
2,158,973 - Dsui_2039 0.66 +1.0
2,158,978 - Dsui_2039 0.66 +0.7
2,159,225 - Dsui_2039 0.85 +2.3
2,159,250 - Dsui_2039 0.87 +1.3
2,159,260 + Dsui_2039 0.88 +0.7
2,159,268 - Dsui_2039 0.89 +0.7
2,159,419 - +1.5
2,159,429 - +1.5
2,159,450 + -0.9
2,159,450 + -3.1
2,159,458 - +1.1
2,159,608 + Dsui_2040 0.36 -1.1
2,159,615 + Dsui_2040 0.38 -0.0
2,159,719 + Dsui_2040 0.60 +0.1
2,159,854 - Dsui_2040 0.90 +1.0
2,159,872 + +1.1
2,159,876 + -1.4
2,159,880 - +0.7
2,159,945 + +0.6
2,159,951 - +0.8
2,159,978 - +0.5
2,160,064 + Dsui_2041 0.13 -0.2
2,160,110 - Dsui_2041 0.19 +4.4
2,160,117 - Dsui_2041 0.20 +1.2
2,160,119 + +1.4
2,160,220 - Dsui_2041 0.33 +0.0
2,160,246 - Dsui_2041 0.36 +1.2
2,160,261 + +0.1
2,160,269 - Dsui_2041 0.39 -2.1
2,160,277 - -1.1
2,160,324 - Dsui_2041 0.46 -1.7
2,160,324 - -0.5
2,160,460 + +0.4
2,160,470 + -2.1
2,160,506 - Dsui_2041 0.69 -0.3
2,160,592 - -3.2
2,160,625 + Dsui_2041 0.84 -2.4
2,160,696 - -0.2
2,160,765 - -4.1
2,160,789 - +0.1
2,160,789 - -1.0
2,160,792 + -3.6
2,160,792 + -1.9
2,160,868 + -3.1
2,160,876 - +0.4
2,160,876 - -0.1
2,160,996 + -0.8
2,161,004 - +0.1
2,161,041 + -2.0
2,161,080 + +0.2
2,161,173 - Dsui_2042 0.34 -1.9
2,161,211 + Dsui_2042 0.38 -1.0
2,161,305 - Dsui_2042 0.46 -2.1
2,161,401 + -2.5
2,161,565 - Dsui_2042 0.68 -0.3
2,161,610 + Dsui_2042 0.72 -1.1
2,161,610 + +1.2
2,161,636 - Dsui_2042 0.74 -0.2
2,161,674 - -2.6
2,161,705 - Dsui_2042 0.80 -2.2

Or see this region's nucleotide sequence