Strain Fitness in Dechlorosoma suillum PS around Dsui_1397

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1396 and Dsui_1397 overlap by 11 nucleotidesDsui_1397 and Dsui_1398 are separated by 157 nucleotidesDsui_1398 and Dsui_1399 overlap by 8 nucleotides Dsui_1396: Dsui_1396 - type II secretory pathway, component ExeA (predicted ATPase), at 1,455,873 to 1,457,318 _1396 Dsui_1397: Dsui_1397 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,457,308 to 1,458,771 _1397 Dsui_1398: Dsui_1398 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 1,458,929 to 1,459,750 _1398 Dsui_1399: Dsui_1399 - conserved hypothetical integral membrane protein, at 1,459,743 to 1,460,525 _1399 Position (kb) 1457 1458 1459Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1456.670 kb on + strand, within Dsui_1396at 1456.759 kb on - strand, within Dsui_1396at 1456.799 kb on - strandat 1456.921 kb on + strandat 1456.929 kb on - strandat 1457.001 kb on - strand, within Dsui_1396at 1457.003 kb on + strandat 1457.011 kb on - strand, within Dsui_1396at 1457.011 kb on - strand, within Dsui_1396at 1457.086 kb on - strand, within Dsui_1396at 1457.144 kb on + strand, within Dsui_1396at 1457.156 kb on - strand, within Dsui_1396at 1457.306 kb on + strandat 1457.341 kb on - strandat 1457.485 kb on - strand, within Dsui_1397at 1457.501 kb on - strandat 1457.542 kb on - strand, within Dsui_1397at 1457.582 kb on + strandat 1457.584 kb on - strand, within Dsui_1397at 1457.673 kb on + strand, within Dsui_1397at 1457.713 kb on + strand, within Dsui_1397at 1457.721 kb on - strand, within Dsui_1397at 1457.791 kb on + strand, within Dsui_1397at 1457.867 kb on + strandat 1457.872 kb on + strand, within Dsui_1397at 1457.944 kb on + strand, within Dsui_1397at 1458.115 kb on - strand, within Dsui_1397at 1458.126 kb on - strand, within Dsui_1397at 1458.130 kb on - strand, within Dsui_1397at 1458.286 kb on - strand, within Dsui_1397at 1458.290 kb on + strand, within Dsui_1397at 1458.307 kb on + strandat 1458.363 kb on + strand, within Dsui_1397at 1458.371 kb on - strand, within Dsui_1397at 1458.371 kb on - strand, within Dsui_1397at 1458.539 kb on - strand, within Dsui_1397at 1458.621 kb on + strand, within Dsui_1397at 1458.644 kb on + strandat 1458.657 kb on - strandat 1458.677 kb on + strandat 1458.682 kb on + strandat 1458.685 kb on - strandat 1458.685 kb on - strandat 1458.697 kb on + strandat 1458.705 kb on - strandat 1458.705 kb on - strandat 1458.713 kb on + strandat 1458.727 kb on - strandat 1458.781 kb on + strandat 1458.810 kb on - strandat 1458.823 kb on + strandat 1458.872 kb on + strandat 1458.872 kb on + strandat 1458.878 kb on + strandat 1458.880 kb on - strandat 1458.880 kb on - strandat 1458.880 kb on - strandat 1458.880 kb on - strandat 1458.886 kb on - strandat 1459.033 kb on + strand, within Dsui_1398at 1459.134 kb on - strand, within Dsui_1398at 1459.148 kb on - strandat 1459.562 kb on - strandat 1459.638 kb on + strand, within Dsui_1398at 1459.729 kb on + strandat 1459.730 kb on - strandat 1459.737 kb on - strandat 1459.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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1,456,670 + Dsui_1396 0.55 -1.2
1,456,759 - Dsui_1396 0.61 -1.2
1,456,799 - -2.0
1,456,921 + -1.1
1,456,929 - -0.3
1,457,001 - Dsui_1396 0.78 +0.2
1,457,003 + -0.3
1,457,011 - Dsui_1396 0.79 +0.1
1,457,011 - Dsui_1396 0.79 +0.2
1,457,086 - Dsui_1396 0.84 +0.3
1,457,144 + Dsui_1396 0.88 +1.1
1,457,156 - Dsui_1396 0.89 +0.3
1,457,306 + +1.5
1,457,341 - +0.6
1,457,485 - Dsui_1397 0.12 -0.6
1,457,501 - +1.8
1,457,542 - Dsui_1397 0.16 +1.2
1,457,582 + -0.2
1,457,584 - Dsui_1397 0.19 +0.9
1,457,673 + Dsui_1397 0.25 +1.0
1,457,713 + Dsui_1397 0.28 +0.3
1,457,721 - Dsui_1397 0.28 -0.0
1,457,791 + Dsui_1397 0.33 -1.2
1,457,867 + -2.5
1,457,872 + Dsui_1397 0.39 +0.2
1,457,944 + Dsui_1397 0.43 -2.0
1,458,115 - Dsui_1397 0.55 +0.7
1,458,126 - Dsui_1397 0.56 +0.9
1,458,130 - Dsui_1397 0.56 +0.5
1,458,286 - Dsui_1397 0.67 -0.9
1,458,290 + Dsui_1397 0.67 -0.1
1,458,307 + +0.2
1,458,363 + Dsui_1397 0.72 -1.4
1,458,371 - Dsui_1397 0.73 +0.3
1,458,371 - Dsui_1397 0.73 +1.2
1,458,539 - Dsui_1397 0.84 +1.2
1,458,621 + Dsui_1397 0.90 -1.4
1,458,644 + -2.4
1,458,657 - +1.6
1,458,677 + -2.1
1,458,682 + -3.1
1,458,685 - +0.2
1,458,685 - +0.4
1,458,697 + +0.8
1,458,705 - +2.0
1,458,705 - +0.7
1,458,713 + -1.2
1,458,727 - +0.6
1,458,781 + +1.2
1,458,810 - +0.4
1,458,823 + -2.7
1,458,872 + -0.0
1,458,872 + -1.8
1,458,878 + +1.2
1,458,880 - -0.9
1,458,880 - -1.0
1,458,880 - +0.1
1,458,880 - +0.9
1,458,886 - -0.5
1,459,033 + Dsui_1398 0.13 -6.3
1,459,134 - Dsui_1398 0.25 -3.5
1,459,148 - -0.1
1,459,562 - -1.1
1,459,638 + Dsui_1398 0.86 -3.2
1,459,729 + -0.1
1,459,730 - -2.7
1,459,737 - -2.6
1,459,737 - -3.9

Or see this region's nucleotide sequence