Strain Fitness in Dechlorosoma suillum PS around Dsui_1232

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1230 and Dsui_1231 are separated by 0 nucleotidesDsui_1231 and Dsui_1232 are separated by 76 nucleotidesDsui_1232 and Dsui_1233 are separated by 160 nucleotides Dsui_1230: Dsui_1230 - TRAP-type uncharacterized transport system, periplasmic component, at 1,287,730 to 1,289,085 _1230 Dsui_1231: Dsui_1231 - ATPase involved in chromosome partitioning, at 1,289,086 to 1,289,709 _1231 Dsui_1232: Dsui_1232 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,289,786 to 1,290,874 _1232 Dsui_1233: Dsui_1233 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,291,035 to 1,292,126 _1233 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1288.901 kb on + strand, within Dsui_1230at 1288.954 kb on + strandat 1288.986 kb on - strandat 1288.988 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1289.000 kb on + strandat 1289.006 kb on - strandat 1289.006 kb on - strandat 1289.006 kb on - strandat 1289.006 kb on - strandat 1289.047 kb on - strandat 1289.129 kb on + strandat 1289.134 kb on + strandat 1289.195 kb on + strand, within Dsui_1231at 1289.277 kb on - strand, within Dsui_1231at 1289.353 kb on + strand, within Dsui_1231at 1289.361 kb on - strand, within Dsui_1231at 1289.361 kb on - strand, within Dsui_1231at 1289.366 kb on + strand, within Dsui_1231at 1289.381 kb on + strand, within Dsui_1231at 1289.384 kb on - strand, within Dsui_1231at 1289.474 kb on + strand, within Dsui_1231at 1289.477 kb on - strand, within Dsui_1231at 1289.507 kb on - strand, within Dsui_1231at 1289.632 kb on - strand, within Dsui_1231at 1289.679 kb on + strandat 1289.679 kb on + strandat 1289.874 kb on + strandat 1289.882 kb on - strandat 1289.985 kb on - strand, within Dsui_1232at 1289.993 kb on - strand, within Dsui_1232at 1290.138 kb on + strand, within Dsui_1232at 1290.141 kb on - strand, within Dsui_1232at 1290.149 kb on - strand, within Dsui_1232at 1290.156 kb on - strand, within Dsui_1232at 1290.165 kb on - strand, within Dsui_1232at 1290.181 kb on - strand, within Dsui_1232at 1290.183 kb on + strand, within Dsui_1232at 1290.297 kb on + strand, within Dsui_1232at 1290.328 kb on + strand, within Dsui_1232at 1290.511 kb on + strand, within Dsui_1232at 1290.556 kb on - strand, within Dsui_1232at 1290.564 kb on + strand, within Dsui_1232at 1290.766 kb on - strandat 1290.780 kb on + strandat 1290.918 kb on - strandat 1291.010 kb on + strandat 1291.010 kb on + strandat 1291.021 kb on + strandat 1291.079 kb on + strandat 1291.123 kb on + strandat 1291.123 kb on + strandat 1291.123 kb on + strandat 1291.131 kb on - strandat 1291.131 kb on - strandat 1291.234 kb on + strand, within Dsui_1233at 1291.234 kb on + strand, within Dsui_1233at 1291.373 kb on + strand, within Dsui_1233at 1291.381 kb on - strand, within Dsui_1233at 1291.381 kb on - strand, within Dsui_1233at 1291.386 kb on + strand, within Dsui_1233at 1291.441 kb on - strand, within Dsui_1233at 1291.510 kb on + strand, within Dsui_1233at 1291.704 kb on + strand, within Dsui_1233at 1291.716 kb on + strand, within Dsui_1233at 1291.775 kb on + strand, within Dsui_1233at 1291.793 kb on - strand, within Dsui_1233at 1291.797 kb on + strandat 1291.798 kb on + strand, within Dsui_1233at 1291.806 kb on - strand, within Dsui_1233at 1291.806 kb on - strand, within Dsui_1233

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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1,288,901 + Dsui_1230 0.86 +0.6
1,288,954 + +1.5
1,288,986 - +0.9
1,288,988 + +0.8
1,288,998 + -0.2
1,288,998 + +0.8
1,288,998 + +2.0
1,288,998 + +0.8
1,288,998 + +0.9
1,288,998 + +1.3
1,288,998 + +0.6
1,288,998 + +0.5
1,289,000 + -0.6
1,289,006 - +0.1
1,289,006 - +0.1
1,289,006 - -0.1
1,289,006 - -0.5
1,289,047 - -0.1
1,289,129 + +0.9
1,289,134 + +1.1
1,289,195 + Dsui_1231 0.17 +1.0
1,289,277 - Dsui_1231 0.31 +0.3
1,289,353 + Dsui_1231 0.43 +1.1
1,289,361 - Dsui_1231 0.44 +1.4
1,289,361 - Dsui_1231 0.44 +0.3
1,289,366 + Dsui_1231 0.45 +0.2
1,289,381 + Dsui_1231 0.47 +1.1
1,289,384 - Dsui_1231 0.48 -1.3
1,289,474 + Dsui_1231 0.62 +1.3
1,289,477 - Dsui_1231 0.63 +0.5
1,289,507 - Dsui_1231 0.67 +0.3
1,289,632 - Dsui_1231 0.88 +0.1
1,289,679 + -0.6
1,289,679 + +1.2
1,289,874 + -0.2
1,289,882 - +1.0
1,289,985 - Dsui_1232 0.18 +1.3
1,289,993 - Dsui_1232 0.19 +1.5
1,290,138 + Dsui_1232 0.32 +0.6
1,290,141 - Dsui_1232 0.33 +1.4
1,290,149 - Dsui_1232 0.33 +0.6
1,290,156 - Dsui_1232 0.34 -0.2
1,290,165 - Dsui_1232 0.35 +1.0
1,290,181 - Dsui_1232 0.36 +1.8
1,290,183 + Dsui_1232 0.36 +0.7
1,290,297 + Dsui_1232 0.47 +0.8
1,290,328 + Dsui_1232 0.50 +0.1
1,290,511 + Dsui_1232 0.67 +0.8
1,290,556 - Dsui_1232 0.71 +1.1
1,290,564 + Dsui_1232 0.71 +1.8
1,290,766 - +1.9
1,290,780 + +1.4
1,290,918 - +0.5
1,291,010 + +1.1
1,291,010 + +1.0
1,291,021 + -1.2
1,291,079 + +0.6
1,291,123 + -3.4
1,291,123 + -1.6
1,291,123 + -0.4
1,291,131 - +2.6
1,291,131 - +2.3
1,291,234 + Dsui_1233 0.18 +4.6
1,291,234 + Dsui_1233 0.18 +1.3
1,291,373 + Dsui_1233 0.31 +1.2
1,291,381 - Dsui_1233 0.32 +2.1
1,291,381 - Dsui_1233 0.32 +1.2
1,291,386 + Dsui_1233 0.32 +0.4
1,291,441 - Dsui_1233 0.37 +2.1
1,291,510 + Dsui_1233 0.43 +1.8
1,291,704 + Dsui_1233 0.61 +0.5
1,291,716 + Dsui_1233 0.62 +0.3
1,291,775 + Dsui_1233 0.68 +0.4
1,291,793 - Dsui_1233 0.69 +1.6
1,291,797 + +2.4
1,291,798 + Dsui_1233 0.70 -2.2
1,291,806 - Dsui_1233 0.71 +2.3
1,291,806 - Dsui_1233 0.71 +4.1

Or see this region's nucleotide sequence