Strain Fitness in Dechlorosoma suillum PS around Dsui_1097

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1096 and Dsui_1097 are separated by 0 nucleotidesDsui_1097 and Dsui_1098 are separated by 108 nucleotidesDsui_1098 and Dsui_1099 are separated by 57 nucleotides Dsui_1096: Dsui_1096 - glutamate synthase family protein, at 1,135,263 to 1,139,960 _1096 Dsui_1097: Dsui_1097 - NADH/NADPH-dependent glutamate synthase small subunit, at 1,139,961 to 1,141,427 _1097 Dsui_1098: Dsui_1098 - hypothetical protein, at 1,141,536 to 1,142,249 _1098 Dsui_1099: Dsui_1099 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase, at 1,142,307 to 1,143,665 _1099 Position (kb) 1139 1140 1141 1142Strain fitness (log2 ratio) -2 -1 0 1at 1138.975 kb on + strand, within Dsui_1096at 1139.036 kb on - strand, within Dsui_1096at 1139.093 kb on + strand, within Dsui_1096at 1139.101 kb on - strandat 1139.279 kb on + strand, within Dsui_1096at 1139.426 kb on - strand, within Dsui_1096at 1139.431 kb on - strand, within Dsui_1096at 1139.439 kb on + strand, within Dsui_1096at 1139.445 kb on - strand, within Dsui_1096at 1139.488 kb on + strand, within Dsui_1096at 1139.488 kb on + strand, within Dsui_1096at 1139.515 kb on - strandat 1139.679 kb on - strandat 1139.745 kb on - strandat 1139.786 kb on + strandat 1139.786 kb on + strandat 1139.792 kb on - strandat 1139.794 kb on - strandat 1139.798 kb on + strandat 1139.832 kb on - strandat 1139.949 kb on - strandat 1140.018 kb on + strandat 1140.029 kb on + strandat 1140.323 kb on + strand, within Dsui_1097at 1140.370 kb on - strandat 1140.377 kb on + strand, within Dsui_1097at 1140.539 kb on + strand, within Dsui_1097at 1140.656 kb on + strand, within Dsui_1097at 1140.829 kb on - strand, within Dsui_1097at 1140.934 kb on - strand, within Dsui_1097at 1140.979 kb on - strandat 1141.031 kb on - strand, within Dsui_1097at 1141.093 kb on + strand, within Dsui_1097at 1141.110 kb on + strand, within Dsui_1097at 1141.196 kb on - strand, within Dsui_1097at 1141.222 kb on + strand, within Dsui_1097at 1141.677 kb on + strand, within Dsui_1098at 1141.765 kb on + strand, within Dsui_1098at 1141.827 kb on + strand, within Dsui_1098at 1141.901 kb on + strand, within Dsui_1098at 1142.116 kb on - strand, within Dsui_1098at 1142.171 kb on + strand, within Dsui_1098at 1142.256 kb on + strandat 1142.256 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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1,138,975 + Dsui_1096 0.79 +1.6
1,139,036 - Dsui_1096 0.80 -1.2
1,139,093 + Dsui_1096 0.82 +1.6
1,139,101 - +1.6
1,139,279 + Dsui_1096 0.85 +1.6
1,139,426 - Dsui_1096 0.89 -1.8
1,139,431 - Dsui_1096 0.89 -0.4
1,139,439 + Dsui_1096 0.89 -1.4
1,139,445 - Dsui_1096 0.89 -0.8
1,139,488 + Dsui_1096 0.90 +0.6
1,139,488 + Dsui_1096 0.90 +1.6
1,139,515 - -1.8
1,139,679 - -0.4
1,139,745 - +0.6
1,139,786 + -0.4
1,139,786 + -0.0
1,139,792 - +0.6
1,139,794 - -0.8
1,139,798 + -0.0
1,139,832 - -0.8
1,139,949 - -1.0
1,140,018 + -2.3
1,140,029 + +1.6
1,140,323 + Dsui_1097 0.25 -1.9
1,140,370 - +1.6
1,140,377 + Dsui_1097 0.28 +0.6
1,140,539 + Dsui_1097 0.39 -0.0
1,140,656 + Dsui_1097 0.47 -0.0
1,140,829 - Dsui_1097 0.59 -0.0
1,140,934 - Dsui_1097 0.66 +0.6
1,140,979 - -0.0
1,141,031 - Dsui_1097 0.73 -0.8
1,141,093 + Dsui_1097 0.77 -0.8
1,141,110 + Dsui_1097 0.78 +1.6
1,141,196 - Dsui_1097 0.84 -0.0
1,141,222 + Dsui_1097 0.86 +1.6
1,141,677 + Dsui_1098 0.20 +0.7
1,141,765 + Dsui_1098 0.32 +0.7
1,141,827 + Dsui_1098 0.41 +1.6
1,141,901 + Dsui_1098 0.51 +0.5
1,142,116 - Dsui_1098 0.81 -2.5
1,142,171 + Dsui_1098 0.89 +1.3
1,142,256 + +1.1
1,142,256 + +0.7

Or see this region's nucleotide sequence