Strain Fitness in Dechlorosoma suillum PS around Dsui_1069

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1067 and Dsui_1068 overlap by 4 nucleotidesDsui_1068 and Dsui_1069 are separated by 98 nucleotidesDsui_1069 and Dsui_1070 are separated by 111 nucleotidesDsui_1070 and Dsui_1071 are separated by 21 nucleotidesDsui_1071 and Dsui_1072 are separated by 52 nucleotides Dsui_1067: Dsui_1067 - heavy metal sensor kinase, at 1,101,071 to 1,102,438 _1067 Dsui_1068: Dsui_1068 - heavy metal response regulator, at 1,102,435 to 1,103,112 _1068 Dsui_1069: Dsui_1069 - Cytochrome c, at 1,103,211 to 1,103,885 _1069 Dsui_1070: Dsui_1070 - putative metal-binding protein, at 1,103,997 to 1,104,416 _1070 Dsui_1071: Dsui_1071 - hypothetical protein, at 1,104,438 to 1,104,779 _1071 Dsui_1072: Dsui_1072 - outer membrane protein, at 1,104,832 to 1,106,103 _1072 Position (kb) 1103 1104Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1102.235 kb on + strand, within Dsui_1067at 1102.286 kb on - strand, within Dsui_1067at 1102.341 kb on - strandat 1102.341 kb on - strandat 1102.351 kb on + strandat 1102.351 kb on + strandat 1102.352 kb on + strandat 1102.366 kb on + strandat 1102.374 kb on - strandat 1102.396 kb on + strandat 1102.410 kb on - strandat 1102.416 kb on - strandat 1102.426 kb on - strandat 1102.432 kb on - strandat 1102.459 kb on + strandat 1102.473 kb on - strandat 1102.483 kb on - strandat 1102.483 kb on - strandat 1102.491 kb on + strandat 1102.493 kb on - strandat 1102.571 kb on + strand, within Dsui_1068at 1102.578 kb on + strand, within Dsui_1068at 1102.584 kb on - strand, within Dsui_1068at 1102.595 kb on + strand, within Dsui_1068at 1102.600 kb on + strand, within Dsui_1068at 1102.600 kb on + strand, within Dsui_1068at 1102.608 kb on - strand, within Dsui_1068at 1102.608 kb on - strand, within Dsui_1068at 1102.662 kb on + strand, within Dsui_1068at 1102.683 kb on + strand, within Dsui_1068at 1102.690 kb on - strand, within Dsui_1068at 1102.733 kb on + strandat 1102.752 kb on + strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.760 kb on - strand, within Dsui_1068at 1102.762 kb on + strand, within Dsui_1068at 1102.801 kb on + strand, within Dsui_1068at 1102.811 kb on + strand, within Dsui_1068at 1102.836 kb on + strand, within Dsui_1068at 1102.836 kb on + strand, within Dsui_1068at 1102.836 kb on + strand, within Dsui_1068at 1102.844 kb on + strand, within Dsui_1068at 1102.844 kb on + strand, within Dsui_1068at 1102.844 kb on - strand, within Dsui_1068at 1102.844 kb on - strand, within Dsui_1068at 1102.844 kb on - strand, within Dsui_1068at 1102.844 kb on - strand, within Dsui_1068at 1102.852 kb on - strand, within Dsui_1068at 1102.867 kb on + strand, within Dsui_1068at 1102.895 kb on - strand, within Dsui_1068at 1102.959 kb on + strand, within Dsui_1068at 1102.990 kb on - strand, within Dsui_1068at 1103.001 kb on - strand, within Dsui_1068at 1103.006 kb on - strand, within Dsui_1068at 1103.006 kb on - strand, within Dsui_1068at 1103.015 kb on - strand, within Dsui_1068at 1103.029 kb on + strand, within Dsui_1068at 1103.042 kb on - strand, within Dsui_1068at 1103.065 kb on - strandat 1103.065 kb on - strandat 1103.107 kb on - strandat 1103.115 kb on - strandat 1103.115 kb on - strandat 1103.129 kb on - strandat 1103.192 kb on - strandat 1103.201 kb on + strandat 1103.274 kb on - strandat 1103.328 kb on + strand, within Dsui_1069at 1103.329 kb on + strand, within Dsui_1069at 1103.337 kb on - strand, within Dsui_1069at 1103.355 kb on + strand, within Dsui_1069at 1103.423 kb on + strand, within Dsui_1069at 1103.423 kb on + strand, within Dsui_1069at 1103.423 kb on + strandat 1103.423 kb on + strand, within Dsui_1069at 1103.423 kb on + strand, within Dsui_1069at 1103.431 kb on + strandat 1103.438 kb on - strand, within Dsui_1069at 1103.448 kb on + strand, within Dsui_1069at 1103.448 kb on + strand, within Dsui_1069at 1103.448 kb on + strand, within Dsui_1069at 1103.453 kb on + strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.458 kb on + strand, within Dsui_1069at 1103.461 kb on - strand, within Dsui_1069at 1103.466 kb on - strand, within Dsui_1069at 1103.466 kb on - strand, within Dsui_1069at 1103.466 kb on - strand, within Dsui_1069at 1103.519 kb on + strand, within Dsui_1069at 1103.553 kb on + strand, within Dsui_1069at 1103.562 kb on - strand, within Dsui_1069at 1103.562 kb on - strand, within Dsui_1069at 1103.599 kb on + strand, within Dsui_1069at 1103.627 kb on + strand, within Dsui_1069at 1103.654 kb on + strand, within Dsui_1069at 1103.660 kb on + strand, within Dsui_1069at 1103.663 kb on - strand, within Dsui_1069at 1103.663 kb on - strand, within Dsui_1069at 1103.675 kb on + strand, within Dsui_1069at 1103.737 kb on - strand, within Dsui_1069at 1103.850 kb on + strandat 1103.860 kb on + strandat 1103.868 kb on - strandat 1103.868 kb on - strandat 1103.923 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1104.054 kb on - strand, within Dsui_1070at 1104.054 kb on - strand, within Dsui_1070at 1104.065 kb on + strand, within Dsui_1070at 1104.073 kb on - strand, within Dsui_1070at 1104.088 kb on + strand, within Dsui_1070at 1104.096 kb on - strand, within Dsui_1070at 1104.100 kb on + strand, within Dsui_1070at 1104.147 kb on - strand, within Dsui_1070at 1104.155 kb on + strand, within Dsui_1070at 1104.284 kb on + strand, within Dsui_1070at 1104.291 kb on + strand, within Dsui_1070at 1104.292 kb on - strand, within Dsui_1070at 1104.306 kb on - strand, within Dsui_1070at 1104.318 kb on + strand, within Dsui_1070at 1104.318 kb on + strand, within Dsui_1070at 1104.318 kb on + strand, within Dsui_1070at 1104.318 kb on + strand, within Dsui_1070at 1104.367 kb on + strand, within Dsui_1070at 1104.381 kb on + strandat 1104.466 kb on + strandat 1104.474 kb on + strand, within Dsui_1071at 1104.476 kb on + strand, within Dsui_1071at 1104.476 kb on + strand, within Dsui_1071at 1104.484 kb on - strand, within Dsui_1071at 1104.542 kb on + strand, within Dsui_1071at 1104.556 kb on + strand, within Dsui_1071at 1104.556 kb on + strand, within Dsui_1071at 1104.580 kb on + strand, within Dsui_1071at 1104.590 kb on + strand, within Dsui_1071at 1104.633 kb on - strand, within Dsui_1071at 1104.687 kb on - strand, within Dsui_1071at 1104.703 kb on - strand, within Dsui_1071

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
remove
1,102,235 + Dsui_1067 0.85 +0.6
1,102,286 - Dsui_1067 0.89 -0.2
1,102,341 - +0.6
1,102,341 - -2.2
1,102,351 + +0.9
1,102,351 + -0.8
1,102,352 + +0.4
1,102,366 + +0.0
1,102,374 - +0.6
1,102,396 + -0.2
1,102,410 - +1.2
1,102,416 - -0.1
1,102,426 - -1.0
1,102,432 - +0.1
1,102,459 + +0.3
1,102,473 - +0.3
1,102,483 - +0.1
1,102,483 - +0.3
1,102,491 + +1.2
1,102,493 - -1.2
1,102,571 + Dsui_1068 0.20 -0.3
1,102,578 + Dsui_1068 0.21 -3.2
1,102,584 - Dsui_1068 0.22 -1.1
1,102,595 + Dsui_1068 0.24 +0.9
1,102,600 + Dsui_1068 0.24 +0.6
1,102,600 + Dsui_1068 0.24 +1.4
1,102,608 - Dsui_1068 0.26 -0.2
1,102,608 - Dsui_1068 0.26 +0.1
1,102,662 + Dsui_1068 0.33 -0.7
1,102,683 + Dsui_1068 0.37 -0.7
1,102,690 - Dsui_1068 0.38 -0.0
1,102,733 + -0.3
1,102,752 + Dsui_1068 0.47 -2.0
1,102,757 - Dsui_1068 0.47 -0.6
1,102,757 - Dsui_1068 0.47 -1.1
1,102,757 - Dsui_1068 0.47 -0.6
1,102,757 - Dsui_1068 0.47 -0.8
1,102,757 - Dsui_1068 0.47 +0.8
1,102,760 - Dsui_1068 0.48 +1.1
1,102,762 + Dsui_1068 0.48 +1.0
1,102,801 + Dsui_1068 0.54 -1.6
1,102,811 + Dsui_1068 0.55 +0.0
1,102,836 + Dsui_1068 0.59 -0.0
1,102,836 + Dsui_1068 0.59 -2.6
1,102,836 + Dsui_1068 0.59 +0.4
1,102,844 + Dsui_1068 0.60 -0.5
1,102,844 + Dsui_1068 0.60 +0.1
1,102,844 - Dsui_1068 0.60 -0.5
1,102,844 - Dsui_1068 0.60 -0.1
1,102,844 - Dsui_1068 0.60 +0.7
1,102,844 - Dsui_1068 0.60 +0.1
1,102,852 - Dsui_1068 0.62 +0.2
1,102,867 + Dsui_1068 0.64 +0.2
1,102,895 - Dsui_1068 0.68 -0.9
1,102,959 + Dsui_1068 0.77 +0.1
1,102,990 - Dsui_1068 0.82 -1.3
1,103,001 - Dsui_1068 0.83 +0.4
1,103,006 - Dsui_1068 0.84 -0.6
1,103,006 - Dsui_1068 0.84 +0.2
1,103,015 - Dsui_1068 0.86 -0.2
1,103,029 + Dsui_1068 0.88 +0.0
1,103,042 - Dsui_1068 0.90 -0.2
1,103,065 - +2.1
1,103,065 - +0.1
1,103,107 - -0.0
1,103,115 - +0.7
1,103,115 - +0.3
1,103,129 - +0.6
1,103,192 - +0.5
1,103,201 + -1.0
1,103,274 - +0.7
1,103,328 + Dsui_1069 0.17 -1.5
1,103,329 + Dsui_1069 0.17 -2.9
1,103,337 - Dsui_1069 0.19 -0.1
1,103,355 + Dsui_1069 0.21 -1.1
1,103,423 + Dsui_1069 0.31 -0.0
1,103,423 + Dsui_1069 0.31 +0.1
1,103,423 + +0.6
1,103,423 + Dsui_1069 0.31 +0.2
1,103,423 + Dsui_1069 0.31 -2.5
1,103,431 + -0.8
1,103,438 - Dsui_1069 0.34 -0.7
1,103,448 + Dsui_1069 0.35 -1.2
1,103,448 + Dsui_1069 0.35 -1.4
1,103,448 + Dsui_1069 0.35 -1.6
1,103,453 + Dsui_1069 0.36 -1.9
1,103,456 - Dsui_1069 0.36 +0.5
1,103,456 - Dsui_1069 0.36 -1.9
1,103,456 - Dsui_1069 0.36 -0.9
1,103,456 - Dsui_1069 0.36 -1.0
1,103,456 - Dsui_1069 0.36 -2.1
1,103,458 + Dsui_1069 0.37 -0.4
1,103,461 - Dsui_1069 0.37 +0.0
1,103,466 - Dsui_1069 0.38 -0.1
1,103,466 - Dsui_1069 0.38 +0.1
1,103,466 - Dsui_1069 0.38 +0.4
1,103,519 + Dsui_1069 0.46 +0.0
1,103,553 + Dsui_1069 0.51 -1.4
1,103,562 - Dsui_1069 0.52 -0.1
1,103,562 - Dsui_1069 0.52 +0.6
1,103,599 + Dsui_1069 0.57 -1.8
1,103,627 + Dsui_1069 0.62 -1.2
1,103,654 + Dsui_1069 0.66 -0.8
1,103,660 + Dsui_1069 0.67 +1.1
1,103,663 - Dsui_1069 0.67 -0.1
1,103,663 - Dsui_1069 0.67 +0.7
1,103,675 + Dsui_1069 0.69 -0.1
1,103,737 - Dsui_1069 0.78 -0.5
1,103,850 + -0.4
1,103,860 + -1.0
1,103,868 - +0.6
1,103,868 - -2.2
1,103,923 - -0.2
1,103,975 - -1.1
1,103,975 - -0.1
1,103,975 - +0.1
1,103,975 - +0.2
1,104,054 - Dsui_1070 0.14 +0.2
1,104,054 - Dsui_1070 0.14 -0.2
1,104,065 + Dsui_1070 0.16 -0.1
1,104,073 - Dsui_1070 0.18 +0.3
1,104,088 + Dsui_1070 0.22 -0.7
1,104,096 - Dsui_1070 0.24 +0.1
1,104,100 + Dsui_1070 0.25 -0.2
1,104,147 - Dsui_1070 0.36 +1.3
1,104,155 + Dsui_1070 0.38 -2.4
1,104,284 + Dsui_1070 0.68 -0.7
1,104,291 + Dsui_1070 0.70 +0.6
1,104,292 - Dsui_1070 0.70 +1.4
1,104,306 - Dsui_1070 0.74 -0.2
1,104,318 + Dsui_1070 0.76 -0.3
1,104,318 + Dsui_1070 0.76 -0.0
1,104,318 + Dsui_1070 0.76 -1.4
1,104,318 + Dsui_1070 0.76 -0.4
1,104,367 + Dsui_1070 0.88 +0.6
1,104,381 + -0.2
1,104,466 + -0.4
1,104,474 + Dsui_1071 0.11 -0.5
1,104,476 + Dsui_1071 0.11 +0.6
1,104,476 + Dsui_1071 0.11 -1.1
1,104,484 - Dsui_1071 0.13 -3.1
1,104,542 + Dsui_1071 0.30 +0.3
1,104,556 + Dsui_1071 0.35 +2.0
1,104,556 + Dsui_1071 0.35 -1.3
1,104,580 + Dsui_1071 0.42 +0.2
1,104,590 + Dsui_1071 0.44 -1.1
1,104,633 - Dsui_1071 0.57 -1.0
1,104,687 - Dsui_1071 0.73 +1.4
1,104,703 - Dsui_1071 0.77 +1.2

Or see this region's nucleotide sequence