Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1007 and Dsui_1008 are separated by 63 nucleotides Dsui_1008 and Dsui_1009 are separated by 121 nucleotides
Dsui_1007: Dsui_1007 - arabinose efflux permease family protein, at 1,034,396 to 1,035,610
_1007
Dsui_1008: Dsui_1008 - Uncharacterized protein conserved in bacteria (DUF2242), at 1,035,674 to 1,036,201
_1008
Dsui_1009: Dsui_1009 - PAS domain S-box, at 1,036,323 to 1,040,168
_1009
Position (kb)
1035
1036
1037 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1034.707 kb on - strand, within Dsui_1007 at 1034.867 kb on - strand, within Dsui_1007 at 1034.912 kb on + strand, within Dsui_1007 at 1035.189 kb on - strand, within Dsui_1007 at 1035.219 kb on - strand, within Dsui_1007 at 1035.244 kb on - strand, within Dsui_1007 at 1035.282 kb on + strand, within Dsui_1007 at 1035.308 kb on + strand, within Dsui_1007 at 1035.308 kb on + strand, within Dsui_1007 at 1035.341 kb on + strand, within Dsui_1007 at 1035.426 kb on + strand, within Dsui_1007 at 1035.488 kb on - strand, within Dsui_1007 at 1035.612 kb on - strand at 1035.797 kb on - strand, within Dsui_1008 at 1035.894 kb on + strand, within Dsui_1008 at 1035.965 kb on - strand, within Dsui_1008 at 1036.016 kb on - strand, within Dsui_1008 at 1036.094 kb on - strand, within Dsui_1008 at 1036.159 kb on + strand at 1036.165 kb on + strand at 1036.169 kb on + strand at 1036.169 kb on + strand at 1036.174 kb on + strand at 1036.182 kb on - strand at 1036.320 kb on + strand at 1036.320 kb on + strand at 1036.333 kb on - strand at 1036.349 kb on + strand at 1036.357 kb on - strand at 1036.537 kb on - strand at 1036.617 kb on - strand at 1036.691 kb on - strand at 1036.750 kb on - strand, within Dsui_1009 at 1036.750 kb on - strand, within Dsui_1009 at 1036.796 kb on - strand, within Dsui_1009 at 1036.912 kb on - strand, within Dsui_1009 at 1037.025 kb on - strand, within Dsui_1009 at 1037.113 kb on - strand, within Dsui_1009 at 1037.129 kb on + strand, within Dsui_1009 at 1037.137 kb on - strand, within Dsui_1009 at 1037.138 kb on - strand at 1037.143 kb on + strand, within Dsui_1009 at 1037.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 1,034,707 - Dsui_1007 0.26 -1.2 1,034,867 - Dsui_1007 0.39 +0.5 1,034,912 + Dsui_1007 0.42 +0.1 1,035,189 - Dsui_1007 0.65 +1.5 1,035,219 - Dsui_1007 0.68 +0.7 1,035,244 - Dsui_1007 0.70 +0.9 1,035,282 + Dsui_1007 0.73 +1.5 1,035,308 + Dsui_1007 0.75 +0.5 1,035,308 + Dsui_1007 0.75 +0.7 1,035,341 + Dsui_1007 0.78 +1.1 1,035,426 + Dsui_1007 0.85 -1.4 1,035,488 - Dsui_1007 0.90 -0.3 1,035,612 - -1.9 1,035,797 - Dsui_1008 0.23 +2.4 1,035,894 + Dsui_1008 0.42 -2.2 1,035,965 - Dsui_1008 0.55 +0.8 1,036,016 - Dsui_1008 0.65 +1.0 1,036,094 - Dsui_1008 0.80 +1.2 1,036,159 + +0.3 1,036,165 + +2.0 1,036,169 + -0.1 1,036,169 + +1.9 1,036,174 + -0.3 1,036,182 - +0.9 1,036,320 + +0.1 1,036,320 + +0.6 1,036,333 - -2.0 1,036,349 + +0.1 1,036,357 - +0.4 1,036,537 - +0.4 1,036,617 - -0.1 1,036,691 - +0.7 1,036,750 - Dsui_1009 0.11 +1.4 1,036,750 - Dsui_1009 0.11 +1.3 1,036,796 - Dsui_1009 0.12 +1.7 1,036,912 - Dsui_1009 0.15 +1.1 1,037,025 - Dsui_1009 0.18 +0.7 1,037,113 - Dsui_1009 0.21 +1.6 1,037,129 + Dsui_1009 0.21 +1.4 1,037,137 - Dsui_1009 0.21 +0.3 1,037,138 - +1.4 1,037,143 + Dsui_1009 0.21 +0.4 1,037,177 + +0.3
Or see this region's nucleotide sequence