Strain Fitness in Dechlorosoma suillum PS around Dsui_1008

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1007 and Dsui_1008 are separated by 63 nucleotidesDsui_1008 and Dsui_1009 are separated by 121 nucleotides Dsui_1007: Dsui_1007 - arabinose efflux permease family protein, at 1,034,396 to 1,035,610 _1007 Dsui_1008: Dsui_1008 - Uncharacterized protein conserved in bacteria (DUF2242), at 1,035,674 to 1,036,201 _1008 Dsui_1009: Dsui_1009 - PAS domain S-box, at 1,036,323 to 1,040,168 _1009 Position (kb) 1035 1036 1037Strain fitness (log2 ratio) -2 -1 0 1 2at 1034.707 kb on - strand, within Dsui_1007at 1034.867 kb on - strand, within Dsui_1007at 1034.912 kb on + strand, within Dsui_1007at 1035.189 kb on - strand, within Dsui_1007at 1035.219 kb on - strand, within Dsui_1007at 1035.244 kb on - strand, within Dsui_1007at 1035.282 kb on + strand, within Dsui_1007at 1035.308 kb on + strand, within Dsui_1007at 1035.308 kb on + strand, within Dsui_1007at 1035.341 kb on + strand, within Dsui_1007at 1035.426 kb on + strand, within Dsui_1007at 1035.488 kb on - strand, within Dsui_1007at 1035.612 kb on - strandat 1035.797 kb on - strand, within Dsui_1008at 1035.894 kb on + strand, within Dsui_1008at 1035.965 kb on - strand, within Dsui_1008at 1036.016 kb on - strand, within Dsui_1008at 1036.094 kb on - strand, within Dsui_1008at 1036.159 kb on + strandat 1036.165 kb on + strandat 1036.169 kb on + strandat 1036.169 kb on + strandat 1036.174 kb on + strandat 1036.182 kb on - strandat 1036.320 kb on + strandat 1036.320 kb on + strandat 1036.333 kb on - strandat 1036.349 kb on + strandat 1036.357 kb on - strandat 1036.537 kb on - strandat 1036.617 kb on - strandat 1036.691 kb on - strandat 1036.750 kb on - strand, within Dsui_1009at 1036.750 kb on - strand, within Dsui_1009at 1036.796 kb on - strand, within Dsui_1009at 1036.912 kb on - strand, within Dsui_1009at 1037.025 kb on - strand, within Dsui_1009at 1037.113 kb on - strand, within Dsui_1009at 1037.129 kb on + strand, within Dsui_1009at 1037.137 kb on - strand, within Dsui_1009at 1037.138 kb on - strandat 1037.143 kb on + strand, within Dsui_1009at 1037.177 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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1,034,707 - Dsui_1007 0.26 -1.2
1,034,867 - Dsui_1007 0.39 +0.5
1,034,912 + Dsui_1007 0.42 +0.1
1,035,189 - Dsui_1007 0.65 +1.5
1,035,219 - Dsui_1007 0.68 +0.7
1,035,244 - Dsui_1007 0.70 +0.9
1,035,282 + Dsui_1007 0.73 +1.5
1,035,308 + Dsui_1007 0.75 +0.5
1,035,308 + Dsui_1007 0.75 +0.7
1,035,341 + Dsui_1007 0.78 +1.1
1,035,426 + Dsui_1007 0.85 -1.4
1,035,488 - Dsui_1007 0.90 -0.3
1,035,612 - -1.9
1,035,797 - Dsui_1008 0.23 +2.4
1,035,894 + Dsui_1008 0.42 -2.2
1,035,965 - Dsui_1008 0.55 +0.8
1,036,016 - Dsui_1008 0.65 +1.0
1,036,094 - Dsui_1008 0.80 +1.2
1,036,159 + +0.3
1,036,165 + +2.0
1,036,169 + -0.1
1,036,169 + +1.9
1,036,174 + -0.3
1,036,182 - +0.9
1,036,320 + +0.1
1,036,320 + +0.6
1,036,333 - -2.0
1,036,349 + +0.1
1,036,357 - +0.4
1,036,537 - +0.4
1,036,617 - -0.1
1,036,691 - +0.7
1,036,750 - Dsui_1009 0.11 +1.4
1,036,750 - Dsui_1009 0.11 +1.3
1,036,796 - Dsui_1009 0.12 +1.7
1,036,912 - Dsui_1009 0.15 +1.1
1,037,025 - Dsui_1009 0.18 +0.7
1,037,113 - Dsui_1009 0.21 +1.6
1,037,129 + Dsui_1009 0.21 +1.4
1,037,137 - Dsui_1009 0.21 +0.3
1,037,138 - +1.4
1,037,143 + Dsui_1009 0.21 +0.4
1,037,177 + +0.3

Or see this region's nucleotide sequence