Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1003 and Dsui_1004 are separated by 113 nucleotides Dsui_1004 and Dsui_1005 are separated by 88 nucleotides Dsui_1005 and Dsui_1006 are separated by 40 nucleotides Dsui_1006 and Dsui_1007 are separated by 113 nucleotides
Dsui_1003: Dsui_1003 - phosphoribosylglycinamide formyltransferase 2, at 1,031,262 to 1,032,494
_1003
Dsui_1004: Dsui_1004 - conserved protein of DIM6/NTAB family, at 1,032,608 to 1,033,159
_1004
Dsui_1005: Dsui_1005 - tRNA-Gly, at 1,033,248 to 1,033,321
_1005
Dsui_1006: Dsui_1006 - transcriptional regulator, at 1,033,362 to 1,034,282
_1006
Dsui_1007: Dsui_1007 - arabinose efflux permease family protein, at 1,034,396 to 1,035,610
_1007
Position (kb)
1033
1034
1035 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1032.384 kb on + strand at 1032.394 kb on - strand at 1032.630 kb on + strand at 1032.710 kb on + strand, within Dsui_1004 at 1032.849 kb on + strand, within Dsui_1004 at 1032.884 kb on - strand at 1032.928 kb on - strand at 1033.006 kb on - strand at 1033.174 kb on + strand at 1033.257 kb on + strand, within Dsui_1005 at 1033.269 kb on + strand, within Dsui_1005 at 1033.277 kb on - strand at 1033.284 kb on + strand, within Dsui_1005 at 1033.349 kb on - strand at 1033.403 kb on - strand at 1033.413 kb on - strand at 1033.712 kb on - strand, within Dsui_1006 at 1033.737 kb on - strand, within Dsui_1006 at 1033.758 kb on - strand, within Dsui_1006 at 1033.845 kb on + strand, within Dsui_1006 at 1033.884 kb on + strand, within Dsui_1006 at 1033.908 kb on - strand, within Dsui_1006 at 1033.985 kb on + strand, within Dsui_1006 at 1033.990 kb on + strand at 1034.149 kb on - strand, within Dsui_1006 at 1034.159 kb on + strand, within Dsui_1006 at 1034.166 kb on - strand, within Dsui_1006 at 1034.179 kb on + strand at 1034.253 kb on - strand at 1034.405 kb on + strand at 1034.482 kb on + strand at 1034.484 kb on + strand at 1034.484 kb on + strand at 1034.530 kb on - strand, within Dsui_1007 at 1034.530 kb on - strand, within Dsui_1007 at 1034.707 kb on - strand, within Dsui_1007 at 1034.867 kb on - strand, within Dsui_1007 at 1034.912 kb on + strand, within Dsui_1007 at 1035.189 kb on - strand, within Dsui_1007 at 1035.219 kb on - strand, within Dsui_1007 at 1035.244 kb on - strand, within Dsui_1007 at 1035.282 kb on + strand, within Dsui_1007
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 1,032,384 + +1.6 1,032,394 - +1.2 1,032,630 + -0.3 1,032,710 + Dsui_1004 0.18 -1.3 1,032,849 + Dsui_1004 0.44 +1.3 1,032,884 - +0.7 1,032,928 - -3.1 1,033,006 - -1.8 1,033,174 + +0.4 1,033,257 + Dsui_1005 0.12 -0.2 1,033,269 + Dsui_1005 0.28 +0.5 1,033,277 - -0.9 1,033,284 + Dsui_1005 0.49 +0.2 1,033,349 - +1.2 1,033,403 - +0.4 1,033,413 - +1.4 1,033,712 - Dsui_1006 0.38 +1.0 1,033,737 - Dsui_1006 0.41 +1.2 1,033,758 - Dsui_1006 0.43 +1.0 1,033,845 + Dsui_1006 0.52 +1.1 1,033,884 + Dsui_1006 0.57 +0.6 1,033,908 - Dsui_1006 0.59 +0.7 1,033,985 + Dsui_1006 0.68 +0.3 1,033,990 + +0.4 1,034,149 - Dsui_1006 0.85 +1.9 1,034,159 + Dsui_1006 0.87 +0.0 1,034,166 - Dsui_1006 0.87 +0.5 1,034,179 + +0.9 1,034,253 - +1.1 1,034,405 + +1.2 1,034,482 + +0.8 1,034,484 + +0.7 1,034,484 + +1.3 1,034,530 - Dsui_1007 0.11 +0.0 1,034,530 - Dsui_1007 0.11 +0.1 1,034,707 - Dsui_1007 0.26 -1.2 1,034,867 - Dsui_1007 0.39 +0.5 1,034,912 + Dsui_1007 0.42 +0.1 1,035,189 - Dsui_1007 0.65 +1.5 1,035,219 - Dsui_1007 0.68 +0.7 1,035,244 - Dsui_1007 0.70 +0.9 1,035,282 + Dsui_1007 0.73 +1.5
Or see this region's nucleotide sequence