Strain Fitness in Dechlorosoma suillum PS around Dsui_0941

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0940 and Dsui_0941 are separated by 152 nucleotidesDsui_0941 and Dsui_0942 are separated by 153 nucleotides Dsui_0940: Dsui_0940 - Nif-specific regulatory protein, at 968,329 to 970,062 _0940 Dsui_0941: Dsui_0941 - nitrogenase-associated protein, at 970,215 to 970,643 _0941 Dsui_0942: Dsui_0942 - hypothetical protein, at 970,797 to 971,366 _0942 Position (kb) 970 971Strain fitness (log2 ratio) -3 -2 -1 0 1at 969.235 kb on - strand, within Dsui_0940at 969.272 kb on - strand, within Dsui_0940at 969.281 kb on + strand, within Dsui_0940at 969.296 kb on + strandat 969.297 kb on - strand, within Dsui_0940at 969.314 kb on - strand, within Dsui_0940at 969.396 kb on - strand, within Dsui_0940at 969.416 kb on + strand, within Dsui_0940at 969.454 kb on - strandat 969.592 kb on + strand, within Dsui_0940at 969.602 kb on - strand, within Dsui_0940at 969.683 kb on + strand, within Dsui_0940at 969.691 kb on - strand, within Dsui_0940at 969.691 kb on - strand, within Dsui_0940at 969.978 kb on - strandat 969.983 kb on - strandat 969.998 kb on + strandat 970.121 kb on - strandat 970.337 kb on + strandat 970.414 kb on + strand, within Dsui_0941at 970.434 kb on - strandat 970.469 kb on + strand, within Dsui_0941at 970.581 kb on - strand, within Dsui_0941at 970.853 kb on - strandat 970.954 kb on + strand, within Dsui_0942at 970.962 kb on - strand, within Dsui_0942at 970.977 kb on + strand, within Dsui_0942at 971.009 kb on + strand, within Dsui_0942at 971.038 kb on + strandat 971.104 kb on - strand, within Dsui_0942at 971.214 kb on - strand, within Dsui_0942at 971.284 kb on + strand, within Dsui_0942at 971.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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969,235 - Dsui_0940 0.52 -0.4
969,272 - Dsui_0940 0.54 +0.1
969,281 + Dsui_0940 0.55 +0.6
969,296 + +1.4
969,297 - Dsui_0940 0.56 +1.1
969,314 - Dsui_0940 0.57 +0.6
969,396 - Dsui_0940 0.62 +0.4
969,416 + Dsui_0940 0.63 +0.6
969,454 - -2.9
969,592 + Dsui_0940 0.73 +0.1
969,602 - Dsui_0940 0.73 -0.0
969,683 + Dsui_0940 0.78 +0.3
969,691 - Dsui_0940 0.79 -0.5
969,691 - Dsui_0940 0.79 +0.2
969,978 - +0.1
969,983 - -0.3
969,998 + -0.5
970,121 - -1.0
970,337 + -3.4
970,414 + Dsui_0941 0.46 -0.1
970,434 - -2.0
970,469 + Dsui_0941 0.59 +1.6
970,581 - Dsui_0941 0.85 +1.1
970,853 - +0.4
970,954 + Dsui_0942 0.28 -0.4
970,962 - Dsui_0942 0.29 -0.0
970,977 + Dsui_0942 0.32 +1.0
971,009 + Dsui_0942 0.37 +0.3
971,038 + -2.2
971,104 - Dsui_0942 0.54 +0.3
971,214 - Dsui_0942 0.73 +1.1
971,284 + Dsui_0942 0.85 -0.3
971,635 - +0.6

Or see this region's nucleotide sequence