Strain Fitness in Dechlorosoma suillum PS around Dsui_0423

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0422 and Dsui_0423 are separated by 50 nucleotidesDsui_0423 and Dsui_0424 are separated by 213 nucleotides Dsui_0422: Dsui_0422 - thiamine biosynthesis protein ThiC, at 424,450 to 426,366 _0422 Dsui_0423: Dsui_0423 - putative permease, at 426,417 to 427,475 _0423 Dsui_0424: Dsui_0424 - phosphoketolase, at 427,689 to 430,109 _0424 Position (kb) 426 427 428Strain fitness (log2 ratio) -2 -1 0 1 2 3at 426.433 kb on + strandat 426.496 kb on - strandat 426.566 kb on - strand, within Dsui_0423at 426.596 kb on + strand, within Dsui_0423at 426.691 kb on - strand, within Dsui_0423at 426.700 kb on + strandat 426.737 kb on + strandat 426.750 kb on - strand, within Dsui_0423at 426.753 kb on + strand, within Dsui_0423at 426.756 kb on - strand, within Dsui_0423at 426.845 kb on - strand, within Dsui_0423at 426.850 kb on - strand, within Dsui_0423at 426.917 kb on - strand, within Dsui_0423at 427.006 kb on - strand, within Dsui_0423at 427.067 kb on - strand, within Dsui_0423at 427.091 kb on + strand, within Dsui_0423at 427.184 kb on - strand, within Dsui_0423at 427.282 kb on - strand, within Dsui_0423at 427.543 kb on + strandat 427.543 kb on + strandat 427.828 kb on + strandat 427.908 kb on + strandat 427.931 kb on - strand, within Dsui_0424at 428.319 kb on - strand, within Dsui_0424at 428.324 kb on - strand, within Dsui_0424at 428.341 kb on - strandat 428.454 kb on + strand, within Dsui_0424at 428.459 kb on + strand, within Dsui_0424

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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426,433 + +0.6
426,496 - +1.0
426,566 - Dsui_0423 0.14 +1.3
426,596 + Dsui_0423 0.17 +1.1
426,691 - Dsui_0423 0.26 +0.9
426,700 + +0.5
426,737 + +3.1
426,750 - Dsui_0423 0.31 +1.5
426,753 + Dsui_0423 0.32 +0.7
426,756 - Dsui_0423 0.32 +1.4
426,845 - Dsui_0423 0.40 +1.2
426,850 - Dsui_0423 0.41 +0.5
426,917 - Dsui_0423 0.47 +1.0
427,006 - Dsui_0423 0.56 +1.3
427,067 - Dsui_0423 0.61 -0.8
427,091 + Dsui_0423 0.64 +0.6
427,184 - Dsui_0423 0.72 +0.5
427,282 - Dsui_0423 0.82 +1.7
427,543 + -2.1
427,543 + +0.6
427,828 + +0.1
427,908 + +0.9
427,931 - Dsui_0424 0.10 +0.6
428,319 - Dsui_0424 0.26 -0.8
428,324 - Dsui_0424 0.26 +1.2
428,341 - +0.4
428,454 + Dsui_0424 0.32 +0.3
428,459 + Dsui_0424 0.32 +1.1

Or see this region's nucleotide sequence