Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04360

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04355 and BWI76_RS04360 are separated by 65 nucleotidesBWI76_RS04360 and BWI76_RS04365 are separated by 29 nucleotides BWI76_RS04355: BWI76_RS04355 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 896,870 to 897,820 _RS04355 BWI76_RS04360: BWI76_RS04360 - ribonucleoside hydrolase RihC, at 897,886 to 898,800 _RS04360 BWI76_RS04365: BWI76_RS04365 - LysR family transcriptional regulator, at 898,830 to 899,768 _RS04365 Position (kb) 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2at 897.853 kb on + strandat 897.853 kb on + strandat 898.063 kb on - strand, within BWI76_RS04360at 898.115 kb on - strand, within BWI76_RS04360at 898.350 kb on + strand, within BWI76_RS04360at 898.453 kb on - strandat 898.558 kb on + strand, within BWI76_RS04360at 898.628 kb on + strand, within BWI76_RS04360at 898.834 kb on - strandat 898.953 kb on + strand, within BWI76_RS04365at 899.063 kb on - strand, within BWI76_RS04365at 899.113 kb on - strand, within BWI76_RS04365at 899.193 kb on + strand, within BWI76_RS04365at 899.199 kb on + strand, within BWI76_RS04365at 899.210 kb on - strand, within BWI76_RS04365at 899.267 kb on - strand, within BWI76_RS04365at 899.296 kb on - strand, within BWI76_RS04365at 899.346 kb on + strand, within BWI76_RS04365at 899.355 kb on - strand, within BWI76_RS04365at 899.369 kb on - strand, within BWI76_RS04365at 899.372 kb on + strand, within BWI76_RS04365at 899.372 kb on + strand, within BWI76_RS04365at 899.372 kb on + strandat 899.372 kb on + strand, within BWI76_RS04365at 899.372 kb on + strand, within BWI76_RS04365at 899.372 kb on + strand, within BWI76_RS04365at 899.374 kb on + strand, within BWI76_RS04365at 899.374 kb on + strand, within BWI76_RS04365at 899.374 kb on + strand, within BWI76_RS04365at 899.378 kb on - strand, within BWI76_RS04365at 899.378 kb on - strand, within BWI76_RS04365at 899.378 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.382 kb on - strand, within BWI76_RS04365at 899.475 kb on + strand, within BWI76_RS04365at 899.478 kb on - strand, within BWI76_RS04365at 899.480 kb on + strand, within BWI76_RS04365at 899.480 kb on + strand, within BWI76_RS04365at 899.512 kb on + strand, within BWI76_RS04365at 899.519 kb on + strandat 899.534 kb on + strand, within BWI76_RS04365at 899.562 kb on - strand, within BWI76_RS04365at 899.562 kb on - strand, within BWI76_RS04365at 899.562 kb on - strand, within BWI76_RS04365at 899.562 kb on - strand, within BWI76_RS04365at 899.596 kb on - strandat 899.622 kb on - strand, within BWI76_RS04365at 899.624 kb on + strand, within BWI76_RS04365at 899.664 kb on + strand, within BWI76_RS04365at 899.674 kb on + strand, within BWI76_RS04365at 899.678 kb on + strandat 899.678 kb on + strandat 899.678 kb on + strandat 899.678 kb on + strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.686 kb on - strandat 899.686 kb on - strandat 899.688 kb on + strandat 899.688 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.701 kb on + strandat 899.723 kb on + strandat 899.723 kb on - strandat 899.723 kb on - strandat 899.731 kb on - strandat 899.731 kb on - strandat 899.776 kb on + strandat 899.781 kb on - strandat 899.784 kb on - strandat 899.784 kb on - strandat 899.786 kb on - strandat 899.792 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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897,853 + +0.2
897,853 + -0.5
898,063 - BWI76_RS04360 0.19 -2.3
898,115 - BWI76_RS04360 0.25 -0.5
898,350 + BWI76_RS04360 0.51 -1.4
898,453 - +1.5
898,558 + BWI76_RS04360 0.73 -0.4
898,628 + BWI76_RS04360 0.81 -1.4
898,834 - -0.7
898,953 + BWI76_RS04365 0.13 +0.2
899,063 - BWI76_RS04365 0.25 +1.6
899,113 - BWI76_RS04365 0.30 +0.1
899,193 + BWI76_RS04365 0.39 -0.2
899,199 + BWI76_RS04365 0.39 -0.4
899,210 - BWI76_RS04365 0.40 +0.1
899,267 - BWI76_RS04365 0.47 -0.7
899,296 - BWI76_RS04365 0.50 -1.0
899,346 + BWI76_RS04365 0.55 -0.7
899,355 - BWI76_RS04365 0.56 -0.1
899,369 - BWI76_RS04365 0.57 -0.3
899,372 + BWI76_RS04365 0.58 +0.0
899,372 + BWI76_RS04365 0.58 +0.6
899,372 + -0.7
899,372 + BWI76_RS04365 0.58 +0.1
899,372 + BWI76_RS04365 0.58 +0.3
899,372 + BWI76_RS04365 0.58 -0.6
899,374 + BWI76_RS04365 0.58 -0.2
899,374 + BWI76_RS04365 0.58 -0.1
899,374 + BWI76_RS04365 0.58 +0.1
899,378 - BWI76_RS04365 0.58 +1.1
899,378 - BWI76_RS04365 0.58 -0.9
899,378 - BWI76_RS04365 0.58 -0.9
899,380 - BWI76_RS04365 0.59 +0.6
899,380 - BWI76_RS04365 0.59 +0.2
899,380 - BWI76_RS04365 0.59 +0.4
899,380 - BWI76_RS04365 0.59 +0.0
899,380 - BWI76_RS04365 0.59 -1.6
899,380 - BWI76_RS04365 0.59 +0.2
899,382 - BWI76_RS04365 0.59 -0.9
899,475 + BWI76_RS04365 0.69 -0.4
899,478 - BWI76_RS04365 0.69 +0.2
899,480 + BWI76_RS04365 0.69 +0.1
899,480 + BWI76_RS04365 0.69 -1.9
899,512 + BWI76_RS04365 0.73 +0.4
899,519 + -0.9
899,534 + BWI76_RS04365 0.75 -0.6
899,562 - BWI76_RS04365 0.78 -0.2
899,562 - BWI76_RS04365 0.78 -1.4
899,562 - BWI76_RS04365 0.78 +0.1
899,562 - BWI76_RS04365 0.78 +0.5
899,596 - -1.4
899,622 - BWI76_RS04365 0.84 +0.4
899,624 + BWI76_RS04365 0.85 -0.4
899,664 + BWI76_RS04365 0.89 +0.7
899,674 + BWI76_RS04365 0.90 -1.2
899,678 + -0.5
899,678 + +1.1
899,678 + -2.0
899,678 + +0.7
899,683 + -0.3
899,683 + +0.3
899,683 + -0.1
899,683 + +1.1
899,683 + +0.6
899,686 - +0.3
899,686 - +2.7
899,688 + -0.4
899,688 - -0.4
899,691 - -0.7
899,691 - +0.1
899,691 - +2.1
899,691 - +1.1
899,691 - +0.8
899,691 - +0.4
899,691 - +1.1
899,691 - -0.6
899,701 + -1.4
899,723 + -0.9
899,723 - +1.6
899,723 - +0.3
899,731 - -0.3
899,731 - -0.2
899,776 + +0.3
899,781 - +0.0
899,784 - -0.7
899,784 - -0.7
899,786 - -0.7
899,792 + +1.8

Or see this region's nucleotide sequence