Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25715

Experiment: Benzalkonium Chloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25710 and AO353_25715 are separated by 8 nucleotidesAO353_25715 and AO353_25720 are separated by 18 nucleotides AO353_25710: AO353_25710 - iron transporter, at 5,669,198 to 5,670,049 _25710 AO353_25715: AO353_25715 - multidrug DMT transporter permease, at 5,670,058 to 5,671,257 _25715 AO353_25720: AO353_25720 - peroxidase, at 5,671,276 to 5,672,574 _25720 Position (kb) 5670 5671 5672Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5669.092 kb on + strandat 5669.092 kb on + strandat 5669.093 kb on - strandat 5669.093 kb on - strandat 5669.093 kb on - strandat 5669.180 kb on + strandat 5669.270 kb on + strandat 5669.270 kb on + strandat 5669.270 kb on + strandat 5669.270 kb on + strandat 5669.271 kb on - strandat 5669.271 kb on - strandat 5669.271 kb on - strandat 5669.271 kb on - strandat 5669.699 kb on - strandat 5669.699 kb on - strand, within AO353_25710at 5669.702 kb on + strand, within AO353_25710at 5669.702 kb on + strand, within AO353_25710at 5669.702 kb on + strand, within AO353_25710at 5669.703 kb on - strand, within AO353_25710at 5669.703 kb on - strand, within AO353_25710at 5669.948 kb on + strand, within AO353_25710at 5669.948 kb on + strand, within AO353_25710at 5669.949 kb on - strand, within AO353_25710at 5669.958 kb on - strand, within AO353_25710at 5669.958 kb on - strand, within AO353_25710at 5669.958 kb on - strand, within AO353_25710at 5669.958 kb on - strand, within AO353_25710at 5670.157 kb on + strandat 5670.157 kb on + strandat 5670.158 kb on - strandat 5670.158 kb on - strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.222 kb on + strand, within AO353_25715at 5670.223 kb on - strandat 5670.417 kb on + strand, within AO353_25715at 5670.417 kb on + strand, within AO353_25715at 5670.418 kb on - strand, within AO353_25715at 5670.435 kb on + strand, within AO353_25715at 5670.435 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strandat 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.637 kb on + strand, within AO353_25715at 5670.638 kb on - strand, within AO353_25715at 5670.638 kb on - strand, within AO353_25715at 5670.638 kb on - strand, within AO353_25715at 5670.638 kb on - strand, within AO353_25715at 5670.638 kb on - strand, within AO353_25715at 5670.658 kb on + strand, within AO353_25715at 5670.658 kb on + strand, within AO353_25715at 5670.659 kb on - strand, within AO353_25715at 5670.708 kb on + strand, within AO353_25715at 5670.709 kb on - strand, within AO353_25715at 5670.727 kb on + strand, within AO353_25715at 5670.728 kb on - strand, within AO353_25715at 5670.728 kb on - strand, within AO353_25715at 5670.728 kb on - strand, within AO353_25715at 5670.781 kb on + strand, within AO353_25715at 5670.940 kb on - strand, within AO353_25715at 5670.941 kb on + strand, within AO353_25715at 5670.942 kb on - strand, within AO353_25715at 5670.942 kb on - strand, within AO353_25715at 5670.942 kb on - strand, within AO353_25715at 5670.942 kb on - strand, within AO353_25715at 5670.942 kb on - strand, within AO353_25715at 5670.971 kb on - strand, within AO353_25715at 5671.142 kb on - strandat 5671.150 kb on + strandat 5671.150 kb on + strandat 5671.253 kb on + strandat 5671.254 kb on - strandat 5671.254 kb on - strandat 5671.269 kb on + strandat 5671.269 kb on + strandat 5671.286 kb on + strandat 5671.317 kb on - strandat 5671.317 kb on - strandat 5671.514 kb on + strand, within AO353_25720at 5671.514 kb on + strand, within AO353_25720at 5671.514 kb on + strand, within AO353_25720at 5671.515 kb on - strand, within AO353_25720at 5671.515 kb on - strand, within AO353_25720at 5671.515 kb on - strand, within AO353_25720at 5671.842 kb on + strand, within AO353_25720at 5672.086 kb on + strand, within AO353_25720at 5672.087 kb on - strand, within AO353_25720at 5672.087 kb on - strand, within AO353_25720at 5672.087 kb on - strand, within AO353_25720at 5672.224 kb on + strand, within AO353_25720

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.01 mg/ml
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5,669,092 + -1.6
5,669,092 + -2.5
5,669,093 - +0.9
5,669,093 - +2.9
5,669,093 - -0.1
5,669,180 + -1.5
5,669,270 + +1.5
5,669,270 + +2.3
5,669,270 + -0.0
5,669,270 + -1.0
5,669,271 - -1.0
5,669,271 - -1.6
5,669,271 - +1.4
5,669,271 - -0.8
5,669,699 - -1.0
5,669,699 - AO353_25710 0.59 -2.3
5,669,702 + AO353_25710 0.59 -0.6
5,669,702 + AO353_25710 0.59 +0.2
5,669,702 + AO353_25710 0.59 -0.5
5,669,703 - AO353_25710 0.59 -0.9
5,669,703 - AO353_25710 0.59 -0.8
5,669,948 + AO353_25710 0.88 -0.1
5,669,948 + AO353_25710 0.88 -1.5
5,669,949 - AO353_25710 0.88 -1.8
5,669,958 - AO353_25710 0.89 -0.5
5,669,958 - AO353_25710 0.89 +0.5
5,669,958 - AO353_25710 0.89 -0.3
5,669,958 - AO353_25710 0.89 +0.1
5,670,157 + +1.5
5,670,157 + -0.9
5,670,158 - +0.5
5,670,158 - +0.2
5,670,160 + +0.5
5,670,160 + -1.3
5,670,161 - -1.8
5,670,161 - +2.5
5,670,161 - +0.2
5,670,161 - -1.0
5,670,222 + AO353_25715 0.14 +0.3
5,670,223 - +1.5
5,670,417 + AO353_25715 0.30 +0.2
5,670,417 + AO353_25715 0.30 +1.5
5,670,418 - AO353_25715 0.30 -0.5
5,670,435 + AO353_25715 0.31 +3.1
5,670,435 + AO353_25715 0.31 +0.1
5,670,637 + AO353_25715 0.48 -0.8
5,670,637 + AO353_25715 0.48 -0.2
5,670,637 + AO353_25715 0.48 -1.5
5,670,637 + AO353_25715 0.48 -0.9
5,670,637 + AO353_25715 0.48 -1.0
5,670,637 + AO353_25715 0.48 +0.5
5,670,637 + AO353_25715 0.48 +0.4
5,670,637 + +0.9
5,670,637 + AO353_25715 0.48 +1.0
5,670,637 + AO353_25715 0.48 -2.8
5,670,637 + AO353_25715 0.48 +0.4
5,670,638 - AO353_25715 0.48 +1.0
5,670,638 - AO353_25715 0.48 -0.3
5,670,638 - AO353_25715 0.48 +1.0
5,670,638 - AO353_25715 0.48 +0.7
5,670,638 - AO353_25715 0.48 -1.0
5,670,658 + AO353_25715 0.50 +0.5
5,670,658 + AO353_25715 0.50 +1.0
5,670,659 - AO353_25715 0.50 +1.0
5,670,708 + AO353_25715 0.54 -2.5
5,670,709 - AO353_25715 0.54 +0.5
5,670,727 + AO353_25715 0.56 -0.3
5,670,728 - AO353_25715 0.56 -0.3
5,670,728 - AO353_25715 0.56 +0.6
5,670,728 - AO353_25715 0.56 -0.9
5,670,781 + AO353_25715 0.60 +1.4
5,670,940 - AO353_25715 0.73 -0.5
5,670,941 + AO353_25715 0.74 +3.2
5,670,942 - AO353_25715 0.74 +0.5
5,670,942 - AO353_25715 0.74 +0.3
5,670,942 - AO353_25715 0.74 -0.7
5,670,942 - AO353_25715 0.74 +0.2
5,670,942 - AO353_25715 0.74 -0.3
5,670,971 - AO353_25715 0.76 +0.2
5,671,142 - +0.5
5,671,150 + +0.5
5,671,150 + -1.5
5,671,253 + +1.8
5,671,254 - +0.9
5,671,254 - -0.5
5,671,269 + +0.5
5,671,269 + -1.3
5,671,286 + -0.3
5,671,317 - +0.3
5,671,317 - -1.8
5,671,514 + AO353_25720 0.18 -0.5
5,671,514 + AO353_25720 0.18 +0.2
5,671,514 + AO353_25720 0.18 +1.0
5,671,515 - AO353_25720 0.18 -1.5
5,671,515 - AO353_25720 0.18 -1.0
5,671,515 - AO353_25720 0.18 +0.7
5,671,842 + AO353_25720 0.44 -2.0
5,672,086 + AO353_25720 0.62 -1.1
5,672,087 - AO353_25720 0.62 -1.0
5,672,087 - AO353_25720 0.62 +0.5
5,672,087 - AO353_25720 0.62 -1.6
5,672,224 + AO353_25720 0.73 +1.1

Or see this region's nucleotide sequence