Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12995

Experiment: Benzalkonium Chloride 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_12985 and AO353_12990 are separated by 251 nucleotidesAO353_12990 and AO353_12995 are separated by 103 nucleotidesAO353_12995 and AO353_13000 are separated by 23 nucleotides AO353_12985: AO353_12985 - FAD-dependent oxidoreductase, at 2,874,883 to 2,876,058 _12985 AO353_12990: AO353_12990 - multidrug DMT transporter, at 2,876,310 to 2,876,642 _12990 AO353_12995: AO353_12995 - LysR family transcriptional regulator, at 2,876,746 to 2,877,636 _12995 AO353_13000: AO353_13000 - 3-deoxy-D-manno-octulosonic acid transferase, at 2,877,660 to 2,878,934 _13000 Position (kb) 2876 2877 2878Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2876.083 kb on - strandat 2876.083 kb on - strandat 2876.083 kb on - strandat 2876.083 kb on - strandat 2876.095 kb on + strandat 2876.095 kb on + strandat 2876.095 kb on + strandat 2876.095 kb on + strandat 2876.095 kb on + strandat 2876.095 kb on + strandat 2876.096 kb on - strandat 2876.096 kb on - strandat 2876.096 kb on - strandat 2876.111 kb on - strandat 2876.132 kb on + strandat 2876.132 kb on + strandat 2876.132 kb on + strandat 2876.132 kb on + strandat 2876.133 kb on - strandat 2876.133 kb on - strandat 2876.133 kb on - strandat 2876.133 kb on - strandat 2876.133 kb on - strandat 2876.133 kb on - strandat 2876.133 kb on - strandat 2876.133 kb on - strandat 2876.133 kb on - strandat 2876.222 kb on + strandat 2876.223 kb on - strandat 2876.301 kb on + strandat 2876.301 kb on + strandat 2876.301 kb on + strandat 2876.301 kb on + strandat 2876.302 kb on - strandat 2876.302 kb on - strandat 2876.302 kb on - strandat 2876.302 kb on - strandat 2876.302 kb on - strandat 2876.302 kb on - strandat 2876.372 kb on + strand, within AO353_12990at 2876.372 kb on + strand, within AO353_12990at 2876.372 kb on + strand, within AO353_12990at 2876.373 kb on - strand, within AO353_12990at 2876.408 kb on - strand, within AO353_12990at 2876.464 kb on + strand, within AO353_12990at 2876.464 kb on + strand, within AO353_12990at 2876.465 kb on - strand, within AO353_12990at 2876.465 kb on - strand, within AO353_12990at 2876.465 kb on - strand, within AO353_12990at 2876.465 kb on - strand, within AO353_12990at 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.629 kb on + strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.630 kb on - strandat 2876.632 kb on + strandat 2876.632 kb on + strandat 2876.632 kb on + strandat 2876.632 kb on + strandat 2876.632 kb on + strandat 2876.632 kb on + strandat 2876.632 kb on + strandat 2876.633 kb on - strandat 2876.633 kb on - strandat 2876.633 kb on - strandat 2876.633 kb on - strandat 2876.633 kb on - strandat 2876.657 kb on - strandat 2876.687 kb on + strandat 2876.720 kb on + strandat 2876.721 kb on - strandat 2876.910 kb on + strand, within AO353_12995at 2877.203 kb on - strand, within AO353_12995at 2877.293 kb on + strand, within AO353_12995at 2877.294 kb on - strand, within AO353_12995at 2877.294 kb on - strand, within AO353_12995at 2877.365 kb on - strand, within AO353_12995at 2877.415 kb on + strand, within AO353_12995at 2877.415 kb on + strand, within AO353_12995at 2877.415 kb on + strand, within AO353_12995at 2877.415 kb on + strand, within AO353_12995at 2877.415 kb on + strand, within AO353_12995at 2877.415 kb on + strand, within AO353_12995at 2877.416 kb on - strand, within AO353_12995at 2877.416 kb on - strand, within AO353_12995at 2877.491 kb on - strand, within AO353_12995at 2877.491 kb on - strand, within AO353_12995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.01 mg/ml
remove
2,876,083 - -2.2
2,876,083 - -2.1
2,876,083 - -0.6
2,876,083 - -0.4
2,876,095 + -1.2
2,876,095 + +0.0
2,876,095 + +0.4
2,876,095 + -1.8
2,876,095 + +0.0
2,876,095 + -0.6
2,876,096 - -1.2
2,876,096 - -1.0
2,876,096 - -0.4
2,876,111 - +1.4
2,876,132 + -0.2
2,876,132 + -0.4
2,876,132 + +0.4
2,876,132 + -0.6
2,876,133 - -0.6
2,876,133 - +0.8
2,876,133 - -0.7
2,876,133 - +0.5
2,876,133 - +0.5
2,876,133 - -0.2
2,876,133 - +0.9
2,876,133 - +0.4
2,876,133 - +0.6
2,876,222 + +2.2
2,876,223 - -0.2
2,876,301 + -1.9
2,876,301 + -0.2
2,876,301 + +1.0
2,876,301 + -1.2
2,876,302 - -0.2
2,876,302 - -0.6
2,876,302 - -2.1
2,876,302 - -1.2
2,876,302 - +0.8
2,876,302 - -1.3
2,876,372 + AO353_12990 0.19 -0.6
2,876,372 + AO353_12990 0.19 -2.0
2,876,372 + AO353_12990 0.19 -3.5
2,876,373 - AO353_12990 0.19 -1.0
2,876,408 - AO353_12990 0.29 -2.5
2,876,464 + AO353_12990 0.46 -1.6
2,876,464 + AO353_12990 0.46 -2.7
2,876,465 - AO353_12990 0.47 -1.8
2,876,465 - AO353_12990 0.47 -1.5
2,876,465 - AO353_12990 0.47 -3.4
2,876,465 - AO353_12990 0.47 +0.2
2,876,629 + -2.8
2,876,629 + -2.6
2,876,629 + -1.6
2,876,629 + +0.4
2,876,629 + -1.4
2,876,629 + -3.0
2,876,629 + +1.4
2,876,629 + -1.5
2,876,629 + -1.6
2,876,629 + -1.0
2,876,629 + +0.4
2,876,629 + -1.6
2,876,629 + -3.8
2,876,629 + -3.6
2,876,629 + +0.0
2,876,629 + -2.5
2,876,629 + -3.0
2,876,630 - -1.1
2,876,630 - -2.8
2,876,630 - -1.4
2,876,630 - -2.0
2,876,630 - -2.7
2,876,630 - -2.0
2,876,630 - -2.3
2,876,630 - -2.0
2,876,630 - -0.2
2,876,630 - -3.5
2,876,630 - -1.8
2,876,630 - -0.6
2,876,630 - -1.1
2,876,632 + -2.4
2,876,632 + -1.6
2,876,632 + -0.6
2,876,632 + -1.2
2,876,632 + -3.0
2,876,632 + -0.6
2,876,632 + -1.4
2,876,633 - -2.5
2,876,633 - -2.2
2,876,633 - -1.4
2,876,633 - -3.2
2,876,633 - -2.1
2,876,657 - -1.4
2,876,687 + +0.4
2,876,720 + -2.3
2,876,721 - -1.0
2,876,910 + AO353_12995 0.18 -1.4
2,877,203 - AO353_12995 0.51 -1.8
2,877,293 + AO353_12995 0.61 -1.0
2,877,294 - AO353_12995 0.62 -1.5
2,877,294 - AO353_12995 0.62 -2.8
2,877,365 - AO353_12995 0.69 -0.6
2,877,415 + AO353_12995 0.75 -3.4
2,877,415 + AO353_12995 0.75 -1.4
2,877,415 + AO353_12995 0.75 -1.8
2,877,415 + AO353_12995 0.75 -2.2
2,877,415 + AO353_12995 0.75 -2.4
2,877,415 + AO353_12995 0.75 -1.4
2,877,416 - AO353_12995 0.75 -2.5
2,877,416 - AO353_12995 0.75 -2.6
2,877,491 - AO353_12995 0.84 -1.0
2,877,491 - AO353_12995 0.84 -1.6

Or see this region's nucleotide sequence