Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1414 and Shewana3_1415 overlap by 1 nucleotides Shewana3_1415 and Shewana3_1416 are separated by 62 nucleotides Shewana3_1416 and Shewana3_1417 are separated by 394 nucleotides Shewana3_1417 and Shewana3_R0054 are separated by 143 nucleotides Shewana3_R0054 and Shewana3_R0055 are separated by 25 nucleotides Shewana3_R0055 and Shewana3_R0056 are separated by 25 nucleotides
Shewana3_1414: Shewana3_1414 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,638,728 to 1,640,125
_1414
Shewana3_1415: Shewana3_1415 - tripartite ATP-independent periplasmic transporter DctQ (RefSeq), at 1,640,125 to 1,640,769
_1415
Shewana3_1416: Shewana3_1416 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 1,640,832 to 1,641,854
_1416
Shewana3_1417: Shewana3_1417 - hypothetical protein (RefSeq), at 1,642,249 to 1,642,479
_1417
Shewana3_R0054: Shewana3_R0054 - tRNA-Val (RefSeq), at 1,642,623 to 1,642,698
_R0054
Shewana3_R0055: Shewana3_R0055 - tRNA-Val (RefSeq), at 1,642,724 to 1,642,799
_R0055
Shewana3_R0056: Shewana3_R0056 - tRNA-Val (RefSeq), at 1,642,825 to 1,642,900
_R0056
Position (kb) 1640
1641
1642 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1639.967 kb on - strand, within Shewana3_1414 at 1640.246 kb on + strand, within Shewana3_1415 at 1640.302 kb on + strand, within Shewana3_1415 at 1640.391 kb on - strand, within Shewana3_1415 at 1640.456 kb on - strand, within Shewana3_1415 at 1640.574 kb on - strand, within Shewana3_1415 at 1640.578 kb on + strand, within Shewana3_1415 at 1640.588 kb on + strand, within Shewana3_1415 at 1640.588 kb on + strand, within Shewana3_1415 at 1640.625 kb on + strand, within Shewana3_1415 at 1640.625 kb on + strand, within Shewana3_1415 at 1640.633 kb on - strand, within Shewana3_1415 at 1641.062 kb on + strand, within Shewana3_1416 at 1641.105 kb on + strand, within Shewana3_1416 at 1641.120 kb on + strand, within Shewana3_1416 at 1641.123 kb on - strand, within Shewana3_1416 at 1641.184 kb on + strand, within Shewana3_1416 at 1641.192 kb on - strand, within Shewana3_1416 at 1641.280 kb on + strand, within Shewana3_1416 at 1641.364 kb on - strand at 1641.500 kb on - strand, within Shewana3_1416 at 1641.655 kb on + strand, within Shewana3_1416 at 1641.769 kb on - strand at 1641.964 kb on + strand at 1641.972 kb on - strand at 1642.233 kb on - strand at 1642.414 kb on + strand, within Shewana3_1417 at 1642.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 1,639,967 - Shewana3_1414 0.89 +0.9 1,640,246 + Shewana3_1415 0.19 +0.9 1,640,302 + Shewana3_1415 0.27 -0.7 1,640,391 - Shewana3_1415 0.41 -0.1 1,640,456 - Shewana3_1415 0.51 -0.7 1,640,574 - Shewana3_1415 0.70 -0.9 1,640,578 + Shewana3_1415 0.70 -0.4 1,640,588 + Shewana3_1415 0.72 +0.6 1,640,588 + Shewana3_1415 0.72 -0.8 1,640,625 + Shewana3_1415 0.78 +0.1 1,640,625 + Shewana3_1415 0.78 -0.0 1,640,633 - Shewana3_1415 0.79 +0.9 1,641,062 + Shewana3_1416 0.22 -0.1 1,641,105 + Shewana3_1416 0.27 +0.9 1,641,120 + Shewana3_1416 0.28 -0.1 1,641,123 - Shewana3_1416 0.28 -1.6 1,641,184 + Shewana3_1416 0.34 +0.9 1,641,192 - Shewana3_1416 0.35 +1.9 1,641,280 + Shewana3_1416 0.44 +1.3 1,641,364 - +0.9 1,641,500 - Shewana3_1416 0.65 -0.1 1,641,655 + Shewana3_1416 0.80 -2.2 1,641,769 - +0.9 1,641,964 + -0.4 1,641,972 - +1.9 1,642,233 - +0.9 1,642,414 + Shewana3_1417 0.71 +0.9 1,642,507 - +0.9
Or see this region's nucleotide sequence