Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0663 and Shewana3_0664 are separated by 725 nucleotides Shewana3_0664 and Shewana3_0665 are separated by 655 nucleotides
Shewana3_0663: Shewana3_0663 - protein of unknown function RIO1 (RefSeq), at 784,206 to 785,063
_0663
Shewana3_0664: Shewana3_0664 - transposase IS3/IS911 family protein (RefSeq), at 785,789 to 786,022
_0664
Shewana3_0665: Shewana3_0665 - OmpA/MotB domain-containing protein (RefSeq), at 786,678 to 787,370
_0665
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1 at 784.855 kb on + strand, within Shewana3_0663 at 784.956 kb on + strand, within Shewana3_0663 at 785.162 kb on - strand at 785.255 kb on - strand at 785.343 kb on + strand at 785.343 kb on + strand at 785.351 kb on - strand at 785.401 kb on + strand at 785.623 kb on + strand at 785.638 kb on - strand at 785.721 kb on + strand at 785.742 kb on - strand at 785.787 kb on + strand at 785.801 kb on + strand at 785.821 kb on + strand, within Shewana3_0664 at 786.038 kb on + strand at 786.097 kb on + strand at 786.105 kb on - strand at 786.118 kb on + strand at 786.118 kb on + strand at 786.120 kb on - strand at 786.126 kb on - strand at 786.126 kb on - strand at 786.128 kb on - strand at 786.145 kb on - strand at 786.291 kb on - strand at 786.306 kb on - strand at 786.316 kb on - strand at 786.436 kb on - strand at 786.624 kb on + strand at 786.624 kb on + strand at 786.763 kb on + strand, within Shewana3_0665
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 784,855 + Shewana3_0663 0.76 -0.7 784,956 + Shewana3_0663 0.87 -0.4 785,162 - -0.1 785,255 - -0.4 785,343 + -0.1 785,343 + +0.1 785,351 - +0.1 785,401 + -0.0 785,623 + -0.2 785,638 - +0.0 785,721 + +0.6 785,742 - +0.0 785,787 + -0.6 785,801 + -0.3 785,821 + Shewana3_0664 0.14 -2.0 786,038 + +1.0 786,097 + -1.3 786,105 - -0.9 786,118 + +0.3 786,118 + -1.0 786,120 - -1.0 786,126 - -0.4 786,126 - -0.3 786,128 - -0.8 786,145 - -0.3 786,291 - +0.1 786,306 - -0.3 786,316 - +1.1 786,436 - -0.2 786,624 + +0.1 786,624 + -0.8 786,763 + Shewana3_0665 0.12 +0.2
Or see this region's nucleotide sequence