Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0497

Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0496 and Shewana3_0497 overlap by 4 nucleotidesShewana3_0497 and Shewana3_0498 overlap by 4 nucleotides Shewana3_0496: Shewana3_0496 - periplasmic copper-binding (RefSeq), at 578,480 to 579,754 _0496 Shewana3_0497: Shewana3_0497 - ABC transporter related (RefSeq), at 579,751 to 580,797 _0497 Shewana3_0498: Shewana3_0498 - copper ABC transporter, permease protein (RefSeq), at 580,794 to 581,681 _0498 Position (kb) 579 580 581Strain fitness (log2 ratio) -1 0 1at 578.881 kb on + strand, within Shewana3_0496at 578.889 kb on - strand, within Shewana3_0496at 578.987 kb on + strand, within Shewana3_0496at 579.168 kb on + strand, within Shewana3_0496at 579.302 kb on - strand, within Shewana3_0496at 579.304 kb on + strand, within Shewana3_0496at 579.498 kb on + strand, within Shewana3_0496at 579.563 kb on + strand, within Shewana3_0496at 579.676 kb on - strandat 579.989 kb on - strand, within Shewana3_0497at 579.994 kb on - strand, within Shewana3_0497at 580.016 kb on + strand, within Shewana3_0497at 580.147 kb on - strand, within Shewana3_0497at 580.183 kb on - strand, within Shewana3_0497at 580.232 kb on - strand, within Shewana3_0497at 580.258 kb on + strand, within Shewana3_0497at 580.268 kb on + strand, within Shewana3_0497at 580.473 kb on + strand, within Shewana3_0497at 580.473 kb on + strand, within Shewana3_0497at 580.481 kb on - strand, within Shewana3_0497at 580.710 kb on + strandat 580.978 kb on + strand, within Shewana3_0498at 580.981 kb on + strand, within Shewana3_0498at 580.981 kb on + strand, within Shewana3_0498at 580.981 kb on + strand, within Shewana3_0498at 580.981 kb on + strand, within Shewana3_0498at 580.989 kb on - strand, within Shewana3_0498at 580.989 kb on - strand, within Shewana3_0498at 580.991 kb on + strand, within Shewana3_0498at 580.991 kb on + strand, within Shewana3_0498at 581.298 kb on + strand, within Shewana3_0498at 581.368 kb on - strand, within Shewana3_0498at 581.415 kb on + strand, within Shewana3_0498at 581.416 kb on + strand, within Shewana3_0498at 581.429 kb on - strand, within Shewana3_0498at 581.441 kb on - strand, within Shewana3_0498at 581.522 kb on - strand, within Shewana3_0498at 581.553 kb on + strand, within Shewana3_0498at 581.558 kb on + strand, within Shewana3_0498at 581.558 kb on + strand, within Shewana3_0498at 581.561 kb on - strand, within Shewana3_0498at 581.563 kb on + strand, within Shewana3_0498

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM
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578,881 + Shewana3_0496 0.31 -0.1
578,889 - Shewana3_0496 0.32 -0.3
578,987 + Shewana3_0496 0.40 -0.6
579,168 + Shewana3_0496 0.54 +0.1
579,302 - Shewana3_0496 0.64 +0.3
579,304 + Shewana3_0496 0.65 +0.2
579,498 + Shewana3_0496 0.80 -0.3
579,563 + Shewana3_0496 0.85 -0.6
579,676 - +0.2
579,989 - Shewana3_0497 0.23 +0.4
579,994 - Shewana3_0497 0.23 +0.1
580,016 + Shewana3_0497 0.25 +0.1
580,147 - Shewana3_0497 0.38 +0.8
580,183 - Shewana3_0497 0.41 +0.6
580,232 - Shewana3_0497 0.46 -0.3
580,258 + Shewana3_0497 0.48 +0.2
580,268 + Shewana3_0497 0.49 -0.0
580,473 + Shewana3_0497 0.69 -0.2
580,473 + Shewana3_0497 0.69 -0.6
580,481 - Shewana3_0497 0.70 -0.2
580,710 + -0.6
580,978 + Shewana3_0498 0.21 -0.4
580,981 + Shewana3_0498 0.21 -0.4
580,981 + Shewana3_0498 0.21 +0.1
580,981 + Shewana3_0498 0.21 -0.9
580,981 + Shewana3_0498 0.21 +0.2
580,989 - Shewana3_0498 0.22 +0.0
580,989 - Shewana3_0498 0.22 -0.6
580,991 + Shewana3_0498 0.22 +0.1
580,991 + Shewana3_0498 0.22 -0.5
581,298 + Shewana3_0498 0.57 -0.1
581,368 - Shewana3_0498 0.65 -0.3
581,415 + Shewana3_0498 0.70 +0.1
581,416 + Shewana3_0498 0.70 -0.0
581,429 - Shewana3_0498 0.72 -0.1
581,441 - Shewana3_0498 0.73 -0.4
581,522 - Shewana3_0498 0.82 +1.0
581,553 + Shewana3_0498 0.85 +0.0
581,558 + Shewana3_0498 0.86 +0.2
581,558 + Shewana3_0498 0.86 -0.5
581,561 - Shewana3_0498 0.86 +0.7
581,563 + Shewana3_0498 0.87 +0.1

Or see this region's nucleotide sequence