Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0272 and Shewana3_0273 are separated by 303 nucleotides Shewana3_0273 and moaA are separated by 340 nucleotides
Shewana3_0272: Shewana3_0272 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 305,555 to 307,471
_0272
Shewana3_0273: Shewana3_0273 - electron transfer flavoprotein-ubiquinone oxidoreductase (RefSeq), at 307,775 to 309,424
_0273
Shewana3_0274: moaA - molybdenum cofactor biosynthesis protein A (RefSeq), at 309,765 to 310,778
moaA
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -1
0
1 at 307.323 kb on - strand at 307.333 kb on - strand at 307.351 kb on + strand at 307.592 kb on - strand at 307.798 kb on - strand at 307.893 kb on + strand at 307.941 kb on + strand, within Shewana3_0273 at 307.975 kb on + strand, within Shewana3_0273 at 308.022 kb on - strand, within Shewana3_0273 at 308.066 kb on - strand, within Shewana3_0273 at 308.121 kb on + strand, within Shewana3_0273 at 308.377 kb on - strand, within Shewana3_0273 at 308.401 kb on - strand, within Shewana3_0273 at 308.412 kb on + strand, within Shewana3_0273 at 308.510 kb on - strand, within Shewana3_0273 at 308.555 kb on - strand, within Shewana3_0273 at 308.730 kb on + strand, within Shewana3_0273 at 308.730 kb on + strand, within Shewana3_0273 at 308.730 kb on + strand, within Shewana3_0273 at 308.730 kb on + strand, within Shewana3_0273 at 308.730 kb on + strand, within Shewana3_0273 at 308.738 kb on - strand, within Shewana3_0273 at 308.738 kb on - strand, within Shewana3_0273 at 308.738 kb on - strand, within Shewana3_0273 at 308.738 kb on - strand, within Shewana3_0273 at 308.738 kb on - strand, within Shewana3_0273 at 308.738 kb on - strand, within Shewana3_0273 at 308.738 kb on - strand, within Shewana3_0273 at 308.901 kb on - strand, within Shewana3_0273 at 309.045 kb on - strand, within Shewana3_0273 at 309.060 kb on + strand, within Shewana3_0273 at 309.317 kb on + strand at 309.362 kb on + strand at 309.512 kb on - strand at 309.539 kb on - strand at 309.540 kb on + strand at 309.597 kb on - strand at 309.610 kb on + strand at 309.642 kb on + strand at 309.733 kb on - strand at 309.880 kb on + strand, within moaA at 309.898 kb on - strand, within moaA at 310.014 kb on - strand, within moaA at 310.024 kb on - strand, within moaA at 310.109 kb on - strand, within moaA at 310.121 kb on - strand, within moaA at 310.134 kb on + strand, within moaA at 310.134 kb on + strand, within moaA at 310.134 kb on + strand, within moaA at 310.134 kb on + strand, within moaA at 310.142 kb on - strand, within moaA at 310.158 kb on + strand, within moaA at 310.218 kb on + strand, within moaA at 310.402 kb on - strand, within moaA
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 307,323 - -0.0 307,333 - -0.0 307,351 + +0.1 307,592 - +0.1 307,798 - -0.5 307,893 + -0.1 307,941 + Shewana3_0273 0.10 -0.7 307,975 + Shewana3_0273 0.12 -0.1 308,022 - Shewana3_0273 0.15 -0.1 308,066 - Shewana3_0273 0.18 -0.5 308,121 + Shewana3_0273 0.21 -0.0 308,377 - Shewana3_0273 0.36 +0.1 308,401 - Shewana3_0273 0.38 -0.3 308,412 + Shewana3_0273 0.39 -0.4 308,510 - Shewana3_0273 0.45 -0.6 308,555 - Shewana3_0273 0.47 -0.2 308,730 + Shewana3_0273 0.58 -0.6 308,730 + Shewana3_0273 0.58 -0.1 308,730 + Shewana3_0273 0.58 +0.3 308,730 + Shewana3_0273 0.58 -0.4 308,730 + Shewana3_0273 0.58 -0.0 308,738 - Shewana3_0273 0.58 -0.5 308,738 - Shewana3_0273 0.58 -0.3 308,738 - Shewana3_0273 0.58 -0.5 308,738 - Shewana3_0273 0.58 -0.1 308,738 - Shewana3_0273 0.58 +0.1 308,738 - Shewana3_0273 0.58 -0.3 308,738 - Shewana3_0273 0.58 -0.2 308,901 - Shewana3_0273 0.68 -0.1 309,045 - Shewana3_0273 0.77 -0.1 309,060 + Shewana3_0273 0.78 -0.4 309,317 + -0.4 309,362 + -0.7 309,512 - -0.1 309,539 - -0.2 309,540 + -0.1 309,597 - +0.1 309,610 + -0.7 309,642 + +0.2 309,733 - +0.3 309,880 + moaA Shewana3_0274 0.11 +0.2 309,898 - moaA Shewana3_0274 0.13 -0.0 310,014 - moaA Shewana3_0274 0.25 +0.6 310,024 - moaA Shewana3_0274 0.26 -0.1 310,109 - moaA Shewana3_0274 0.34 -1.2 310,121 - moaA Shewana3_0274 0.35 +0.1 310,134 + moaA Shewana3_0274 0.36 -0.0 310,134 + moaA Shewana3_0274 0.36 +0.3 310,134 + moaA Shewana3_0274 0.36 -0.4 310,134 + moaA Shewana3_0274 0.36 +0.1 310,142 - moaA Shewana3_0274 0.37 +0.1 310,158 + moaA Shewana3_0274 0.39 +0.0 310,218 + moaA Shewana3_0274 0.45 +0.4 310,402 - moaA Shewana3_0274 0.63 -0.5
Or see this region's nucleotide sequence