Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0571 and Synpcc7942_0572 overlap by 4 nucleotides Synpcc7942_0572 and tRNA-Gly are separated by 83 nucleotides tRNA-Gly and Synpcc7942_0573 are separated by 8 nucleotides Synpcc7942_0573 and Synpcc7942_0574 are separated by 78 nucleotides
Synpcc7942_0571: Synpcc7942_0571 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 553,324 to 554,697
_0571
Synpcc7942_0572: Synpcc7942_0572 - hypothetical protein, at 554,694 to 555,134
_0572
Synpcc7942_R0032: tRNA-Gly - tRNA-Gly, at 555,218 to 555,288
tRNA-Gly
Synpcc7942_0573: Synpcc7942_0573 - hypothetical protein, at 555,297 to 555,533
_0573
Synpcc7942_0574: Synpcc7942_0574 - hypothetical protein, at 555,612 to 556,442
_0574
Position (kb) 555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 554.536 kb on - strand, within Synpcc7942_0571 at 554.693 kb on + strand at 554.713 kb on + strand at 554.721 kb on - strand at 554.796 kb on + strand, within Synpcc7942_0572 at 554.853 kb on - strand, within Synpcc7942_0572 at 554.895 kb on - strand, within Synpcc7942_0572 at 554.928 kb on + strand, within Synpcc7942_0572 at 554.974 kb on + strand at 555.051 kb on - strand, within Synpcc7942_0572 at 555.071 kb on - strand, within Synpcc7942_0572 at 555.086 kb on - strand, within Synpcc7942_0572 at 555.088 kb on + strand, within Synpcc7942_0572 at 555.098 kb on - strand at 555.119 kb on - strand at 555.139 kb on - strand at 555.155 kb on + strand at 555.157 kb on + strand at 555.157 kb on + strand at 555.157 kb on + strand at 555.160 kb on - strand at 555.165 kb on - strand at 555.165 kb on - strand at 555.165 kb on - strand at 555.176 kb on + strand at 555.182 kb on - strand at 555.182 kb on - strand at 555.294 kb on + strand at 555.302 kb on + strand at 555.314 kb on + strand at 555.345 kb on + strand, within Synpcc7942_0573 at 555.413 kb on + strand, within Synpcc7942_0573 at 555.419 kb on - strand, within Synpcc7942_0573 at 555.477 kb on + strand, within Synpcc7942_0573 at 555.491 kb on - strand, within Synpcc7942_0573 at 555.510 kb on - strand at 555.518 kb on + strand at 555.553 kb on + strand at 555.558 kb on + strand at 555.602 kb on - strand at 555.633 kb on - strand at 555.648 kb on + strand at 555.664 kb on + strand at 555.664 kb on + strand at 555.664 kb on + strand at 555.677 kb on + strand at 555.681 kb on - strand at 555.696 kb on - strand, within Synpcc7942_0574 at 555.721 kb on - strand, within Synpcc7942_0574 at 555.733 kb on + strand, within Synpcc7942_0574 at 555.749 kb on + strand, within Synpcc7942_0574 at 555.820 kb on + strand, within Synpcc7942_0574 at 555.825 kb on + strand, within Synpcc7942_0574 at 555.895 kb on - strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.905 kb on - strand, within Synpcc7942_0574 at 555.913 kb on + strand, within Synpcc7942_0574 at 555.915 kb on + strand, within Synpcc7942_0574 at 555.921 kb on - strand, within Synpcc7942_0574 at 555.921 kb on - strand, within Synpcc7942_0574 at 555.921 kb on - strand, within Synpcc7942_0574 at 555.921 kb on - strand, within Synpcc7942_0574 at 555.987 kb on + strand, within Synpcc7942_0574 at 555.987 kb on + strand, within Synpcc7942_0574 at 555.997 kb on + strand, within Synpcc7942_0574 at 555.998 kb on - strand, within Synpcc7942_0574 at 556.005 kb on - strand, within Synpcc7942_0574 at 556.018 kb on - strand, within Synpcc7942_0574 at 556.023 kb on - strand, within Synpcc7942_0574 at 556.027 kb on + strand, within Synpcc7942_0574 at 556.037 kb on - strand, within Synpcc7942_0574 at 556.037 kb on - strand, within Synpcc7942_0574 at 556.037 kb on - strand, within Synpcc7942_0574 at 556.149 kb on + strand, within Synpcc7942_0574 at 556.153 kb on - strand, within Synpcc7942_0574 at 556.162 kb on - strand, within Synpcc7942_0574 at 556.162 kb on - strand, within Synpcc7942_0574 at 556.181 kb on - strand, within Synpcc7942_0574 at 556.233 kb on + strand, within Synpcc7942_0574 at 556.241 kb on - strand, within Synpcc7942_0574 at 556.253 kb on - strand, within Synpcc7942_0574 at 556.257 kb on + strand, within Synpcc7942_0574 at 556.286 kb on - strand, within Synpcc7942_0574
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 554,536 - Synpcc7942_0571 0.88 -0.3 554,693 + -0.1 554,713 + -2.9 554,721 - +1.2 554,796 + Synpcc7942_0572 0.23 +0.2 554,853 - Synpcc7942_0572 0.36 -1.4 554,895 - Synpcc7942_0572 0.46 -1.7 554,928 + Synpcc7942_0572 0.53 -0.7 554,974 + -0.5 555,051 - Synpcc7942_0572 0.81 -1.8 555,071 - Synpcc7942_0572 0.85 +0.6 555,086 - Synpcc7942_0572 0.89 -3.2 555,088 + Synpcc7942_0572 0.89 +0.3 555,098 - +0.3 555,119 - -1.7 555,139 - -2.4 555,155 + +0.3 555,157 + +1.6 555,157 + -0.1 555,157 + -1.1 555,160 - +0.8 555,165 - +0.2 555,165 - +1.1 555,165 - -0.4 555,176 + -2.7 555,182 - +1.1 555,182 - -0.3 555,294 + -1.7 555,302 + +2.4 555,314 + -1.1 555,345 + Synpcc7942_0573 0.20 -0.1 555,413 + Synpcc7942_0573 0.49 +0.0 555,419 - Synpcc7942_0573 0.51 -0.1 555,477 + Synpcc7942_0573 0.76 +0.0 555,491 - Synpcc7942_0573 0.82 +2.2 555,510 - -0.6 555,518 + -1.1 555,553 + +0.9 555,558 + -1.4 555,602 - -3.4 555,633 - -0.1 555,648 + -0.3 555,664 + -0.3 555,664 + +0.5 555,664 + +1.1 555,677 + -3.2 555,681 - -2.4 555,696 - Synpcc7942_0574 0.10 +0.1 555,721 - Synpcc7942_0574 0.13 +0.1 555,733 + Synpcc7942_0574 0.15 -0.1 555,749 + Synpcc7942_0574 0.16 +1.3 555,820 + Synpcc7942_0574 0.25 +0.3 555,825 + Synpcc7942_0574 0.26 -0.8 555,895 - Synpcc7942_0574 0.34 +1.7 555,897 + Synpcc7942_0574 0.34 +2.2 555,897 + Synpcc7942_0574 0.34 -3.2 555,897 + Synpcc7942_0574 0.34 -0.1 555,897 + Synpcc7942_0574 0.34 -1.1 555,897 + Synpcc7942_0574 0.34 +1.1 555,905 - Synpcc7942_0574 0.35 +0.5 555,913 + Synpcc7942_0574 0.36 +0.1 555,915 + Synpcc7942_0574 0.36 -1.7 555,921 - Synpcc7942_0574 0.37 +0.2 555,921 - Synpcc7942_0574 0.37 +0.0 555,921 - Synpcc7942_0574 0.37 +0.2 555,921 - Synpcc7942_0574 0.37 +1.0 555,987 + Synpcc7942_0574 0.45 +0.8 555,987 + Synpcc7942_0574 0.45 -3.1 555,997 + Synpcc7942_0574 0.46 -0.7 555,998 - Synpcc7942_0574 0.46 -2.1 556,005 - Synpcc7942_0574 0.47 +1.3 556,018 - Synpcc7942_0574 0.49 -1.9 556,023 - Synpcc7942_0574 0.49 -3.1 556,027 + Synpcc7942_0574 0.50 -2.7 556,037 - Synpcc7942_0574 0.51 +1.9 556,037 - Synpcc7942_0574 0.51 -0.1 556,037 - Synpcc7942_0574 0.51 +0.8 556,149 + Synpcc7942_0574 0.65 -2.1 556,153 - Synpcc7942_0574 0.65 -1.1 556,162 - Synpcc7942_0574 0.66 +0.0 556,162 - Synpcc7942_0574 0.66 -0.5 556,181 - Synpcc7942_0574 0.68 +0.6 556,233 + Synpcc7942_0574 0.75 +0.9 556,241 - Synpcc7942_0574 0.76 -0.6 556,253 - Synpcc7942_0574 0.77 +0.3 556,257 + Synpcc7942_0574 0.78 +0.7 556,286 - Synpcc7942_0574 0.81 -2.7
Or see this region's nucleotide sequence