Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2349

Experiment: Ceftazidime 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 0.0625 mg/ml
2,415,439	+	queA	Synpcc7942_2348	0.19	+0.3
2,415,447	-	queA	Synpcc7942_2348	0.20	-0.3
2,415,447	-	queA	Synpcc7942_2348	0.20	-2.1
2,415,447	-	queA	Synpcc7942_2348	0.20	+1.0
2,415,447	-	queA	Synpcc7942_2348	0.20	+0.9
2,415,455	-	queA	Synpcc7942_2348	0.21	-1.1
2,415,487	+	queA	Synpcc7942_2348	0.24	-0.4
2,415,531	-	queA	Synpcc7942_2348	0.28	-1.4
2,415,564	-	queA	Synpcc7942_2348	0.31	-2.9
2,415,579	+	queA	Synpcc7942_2348	0.32	-0.5
2,415,579	+	queA	Synpcc7942_2348	0.32	+0.9
2,415,579	+	queA	Synpcc7942_2348	0.32	-1.4
2,415,587	-	queA	Synpcc7942_2348	0.33	-4.0
2,415,648	+	queA	Synpcc7942_2348	0.38	+0.6
2,415,682	+	queA	Synpcc7942_2348	0.42	+0.5
2,415,694	+	queA	Synpcc7942_2348	0.43	+1.9
2,415,703	+	queA	Synpcc7942_2348	0.44	-0.2
2,415,725	+	queA	Synpcc7942_2348	0.46	-0.7
2,415,731	+	queA	Synpcc7942_2348	0.46	-0.2
2,415,731	+	queA	Synpcc7942_2348	0.46	-2.3
2,415,734	-	queA	Synpcc7942_2348	0.46	-0.1
2,415,750	+	queA	Synpcc7942_2348	0.48	-3.1
2,415,750	+	queA	Synpcc7942_2348	0.48	+0.5
2,415,770	+	queA	Synpcc7942_2348	0.50	+0.9
2,415,770	+	queA	Synpcc7942_2348	0.50	+1.5
2,415,770	+	queA	Synpcc7942_2348	0.50	-0.1
2,415,778	-	queA	Synpcc7942_2348	0.50	-0.1
2,415,778	-	queA	Synpcc7942_2348	0.50	-0.1
2,415,797	-	queA	Synpcc7942_2348	0.52	-0.1
2,415,798	-	queA	Synpcc7942_2348	0.52	-1.2
2,415,812	+	queA	Synpcc7942_2348	0.54	-0.1
2,415,815	-	queA	Synpcc7942_2348	0.54	-1.7
2,415,825	+	queA	Synpcc7942_2348	0.55	-0.1
2,415,828	-	queA	Synpcc7942_2348	0.55	-1.1
2,415,842	+	queA	Synpcc7942_2348	0.56	-2.1
2,415,843	+	queA	Synpcc7942_2348	0.56	-2.4
2,415,849	-	queA	Synpcc7942_2348	0.57	-0.9
2,415,861	-	queA	Synpcc7942_2348	0.58	-0.1
2,415,869	+	queA	Synpcc7942_2348	0.59	-2.1
2,415,870	-	queA	Synpcc7942_2348	0.59	+0.1
2,415,881	-	queA	Synpcc7942_2348	0.60	+0.2
2,415,891	+	queA	Synpcc7942_2348	0.61	-0.1
2,415,894	-	queA	Synpcc7942_2348	0.61	+0.1
2,415,900	-	queA	Synpcc7942_2348	0.62	-4.1
2,415,909	-	queA	Synpcc7942_2348	0.63	+0.0
2,415,923	-	queA	Synpcc7942_2348	0.64	-0.7
2,415,923	-	queA	Synpcc7942_2348	0.64	-0.0
2,415,924	+	queA	Synpcc7942_2348	0.64	+0.9
2,415,927	+	queA	Synpcc7942_2348	0.64	-0.2
2,415,934	+	queA	Synpcc7942_2348	0.65	-0.9
2,416,027	+	queA	Synpcc7942_2348	0.74	-1.5
2,416,036	-	queA	Synpcc7942_2348	0.74	+1.9
2,416,056	-	queA	Synpcc7942_2348	0.76	-2.5
2,416,064	+	queA	Synpcc7942_2348	0.77	-0.1
2,416,064	+	queA	Synpcc7942_2348	0.77	-1.1
2,416,072	-	queA	Synpcc7942_2348	0.78	-0.3
2,416,075	+	queA	Synpcc7942_2348	0.78	-1.9
2,416,075	+	queA	Synpcc7942_2348	0.78	-0.8
2,416,075	+	queA	Synpcc7942_2348	0.78	-2.0
2,416,118	+	queA	Synpcc7942_2348	0.82	-0.1
2,416,122	+	queA	Synpcc7942_2348	0.82	-2.8
2,416,122	+	queA	Synpcc7942_2348	0.82	-0.1
2,416,192	-	queA	Synpcc7942_2348	0.89	-2.1
2,416,206	+				+0.1
2,416,215	+				-0.1
2,416,227	-				+0.1
2,416,242	+				+0.1
2,416,247	+				+0.7
2,416,250	-				-0.1
2,416,250	-				-0.9
2,416,281	+				-0.4
2,416,296	+				-0.9
2,416,296	+				+1.1
2,416,296	+				-1.1
2,416,299	-				-0.2
2,416,304	-				-1.1
2,416,304	-				+0.1
2,416,304	-				+0.2
2,416,322	-				-1.1
2,416,344	+				+2.5
2,416,352	-				+0.9
2,416,352	-				+0.9
2,416,380	+				+0.6
2,416,380	+				+1.3
2,416,398	-				-0.8
2,416,431	+				+0.9
2,416,449	-				+1.9
2,416,465	+				-0.1
2,416,465	+				+1.9
2,416,465	+				+2.8
2,416,470	+				-2.1
2,416,470	+				+1.3
2,416,478	-				+1.5
2,416,478	-				+3.1
2,416,498	+				-1.5
2,416,523	+	pilT	Synpcc7942_2349	0.11	+1.1
2,416,580	+	pilT	Synpcc7942_2349	0.16	-1.1
2,416,593	-	pilT	Synpcc7942_2349	0.17	+2.1
2,416,600	-	pilT	Synpcc7942_2349	0.18	+0.7
2,416,617	+	pilT	Synpcc7942_2349	0.19	+0.7
2,416,692	-	pilT	Synpcc7942_2349	0.26	+0.1
2,416,704	-	pilT	Synpcc7942_2349	0.27	+0.2
2,416,720	+	pilT	Synpcc7942_2349	0.28	+2.9
2,416,726	+	pilT	Synpcc7942_2349	0.28	+0.7
2,416,728	-	pilT	Synpcc7942_2349	0.29	+2.2
2,416,741	+				+0.5
2,416,741	+				-1.1
2,416,749	-	pilT	Synpcc7942_2349	0.30	-0.9
2,416,767	+	pilT	Synpcc7942_2349	0.32	+1.1
2,416,801	+				+0.9
2,416,819	-	pilT	Synpcc7942_2349	0.36	+0.8
2,416,819	-	pilT	Synpcc7942_2349	0.36	+0.6
2,416,824	+	pilT	Synpcc7942_2349	0.37	+0.7
2,416,872	+	pilT	Synpcc7942_2349	0.41	+0.9
2,416,892	+	pilT	Synpcc7942_2349	0.42	+0.9
2,416,892	-	pilT	Synpcc7942_2349	0.42	-2.1
2,416,896	+	pilT	Synpcc7942_2349	0.43	-2.9
2,416,896	+	pilT	Synpcc7942_2349	0.43	+1.9
2,416,902	+	pilT	Synpcc7942_2349	0.43	-2.1
2,416,937	-	pilT	Synpcc7942_2349	0.46	-1.7
2,416,992	-	pilT	Synpcc7942_2349	0.51	-2.7
2,417,044	-	pilT	Synpcc7942_2349	0.55	+0.4
2,417,059	+	pilT	Synpcc7942_2349	0.56	-0.9
2,417,151	+	pilT	Synpcc7942_2349	0.64	-0.8
2,417,171	-	pilT	Synpcc7942_2349	0.66	+0.7
2,417,187	+	pilT	Synpcc7942_2349	0.67	+2.5
2,417,208	+	pilT	Synpcc7942_2349	0.69	+0.9
2,417,208	-	pilT	Synpcc7942_2349	0.69	+1.0
2,417,311	-	pilT	Synpcc7942_2349	0.77	+0.1
2,417,386	+	pilT	Synpcc7942_2349	0.84	-2.7
2,417,526	+				+0.7
2,417,540	+				+1.2
2,417,562	+				-0.5
2,417,574	+				-2.4
2,417,590	+				-1.6
2,417,598	-				-0.1
2,417,619	+				+1.7
2,417,627	-				+0.6
2,417,627	-				-3.1
2,417,627	-				-0.1
2,417,642	+				-0.4
2,417,643	-				-1.2
2,417,660	-				+1.0
2,417,677	+		Synpcc7942_2350	0.12	+0.2
2,417,677	+		Synpcc7942_2350	0.12	+1.3
2,417,685	-		Synpcc7942_2350	0.13	+1.1
2,417,687	+		Synpcc7942_2350	0.13	-0.1
2,417,706	+		Synpcc7942_2350	0.16	+0.5
2,417,774	+		Synpcc7942_2350	0.26	-0.1
2,417,775	+		Synpcc7942_2350	0.26	-0.5
2,417,782	-		Synpcc7942_2350	0.27	-0.1
2,417,824	+		Synpcc7942_2350	0.33	+1.7
2,417,832	-		Synpcc7942_2350	0.34	-0.5
2,417,832	-		Synpcc7942_2350	0.34	+1.2
2,417,859	-		Synpcc7942_2350	0.38	-0.7
2,417,984	-		Synpcc7942_2350	0.56	-1.7
2,418,002	+		Synpcc7942_2350	0.58	-1.1
2,418,002	+		Synpcc7942_2350	0.58	-2.6
2,418,002	-		Synpcc7942_2350	0.58	+0.4
2,418,010	-		Synpcc7942_2350	0.59	+2.7
2,418,058	+		Synpcc7942_2350	0.66	+0.1
2,418,066	-		Synpcc7942_2350	0.67	-2.4
2,418,098	-		Synpcc7942_2350	0.72	-0.3
2,418,098	-		Synpcc7942_2350	0.72	+0.2
2,418,100	-		Synpcc7942_2350	0.72	+0.5
2,418,131	-		Synpcc7942_2350	0.77	+1.4
2,418,140	-		Synpcc7942_2350	0.78	-0.6
2,418,140	-		Synpcc7942_2350	0.78	-0.1
2,418,142	+		Synpcc7942_2350	0.78	-2.7
2,418,142	+		Synpcc7942_2350	0.78	-0.5
2,418,157	+		Synpcc7942_2350	0.80	+0.3
2,418,165	-		Synpcc7942_2350	0.81	-2.0
2,418,192	-		Synpcc7942_2350	0.85	-1.1
2,418,202	+		Synpcc7942_2350	0.87	-1.5
2,418,202	-		Synpcc7942_2350	0.87	-0.1
2,418,233	-				-0.1
2,418,233	-				-3.7
2,418,247	+				+1.2
2,418,255	-				-0.4
2,418,263	-				+1.9
2,418,263	-				+3.4
2,418,265	+				-0.1
2,418,265	+				-0.1
2,418,265	+				-3.1
2,418,273	-				-0.1
2,418,291	+				+1.9
2,418,291	+				+0.9
2,418,306	-				-1.3