Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1979

Experiment: Ceftazidime 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 0.0625 mg/ml
2,049,056	+	ndhF1	Synpcc7942_1977	0.75	-1.9
2,049,056	+	ndhF1	Synpcc7942_1977	0.75	-1.1
2,049,079	+	ndhF1	Synpcc7942_1977	0.76	-0.8
2,049,127	-	ndhF1	Synpcc7942_1977	0.78	-1.6
2,049,127	-	ndhF1	Synpcc7942_1977	0.78	-1.1
2,049,159	+	ndhF1	Synpcc7942_1977	0.80	-1.5
2,049,162	-	ndhF1	Synpcc7942_1977	0.80	-2.2
2,049,167	+	ndhF1	Synpcc7942_1977	0.80	-2.4
2,049,233	+	ndhF1	Synpcc7942_1977	0.83	+2.3
2,049,241	-	ndhF1	Synpcc7942_1977	0.84	-2.4
2,049,241	-	ndhF1	Synpcc7942_1977	0.84	+0.9
2,049,289	-	ndhF1	Synpcc7942_1977	0.86	-0.6
2,049,289	-	ndhF1	Synpcc7942_1977	0.86	-3.5
2,049,318	+	ndhF1	Synpcc7942_1977	0.88	-2.0
2,049,355	+	ndhF1	Synpcc7942_1977	0.89	-2.1
2,049,384	-				-0.1
2,049,428	+				-3.6
2,049,428	+				-2.2
2,049,428	+				-1.1
2,049,443	+				+1.3
2,049,474	+				+0.4
2,049,484	+				-1.1
2,049,497	-				-0.6
2,049,541	+				+0.0
2,049,549	-				-0.1
2,049,587	+				-1.6
2,049,587	+				-3.2
2,049,619	-				+2.1
2,049,643	+				+0.7
2,049,664	+				-0.3
2,049,664	+				-0.3
2,049,672	-				-1.1
2,049,672	-				+0.9
2,049,672	-				+1.1
2,049,720	-	trx	Synpcc7942_1978	0.22	-1.9
2,049,721	-	trx	Synpcc7942_1978	0.23	-1.6
2,049,809	+	trx	Synpcc7942_1978	0.49	-0.1
2,049,817	-	trx	Synpcc7942_1978	0.51	+0.6
2,049,824	+	trx	Synpcc7942_1978	0.53	-1.8
2,049,857	+	trx	Synpcc7942_1978	0.63	-0.3
2,049,871	+	trx	Synpcc7942_1978	0.67	-2.1
2,049,879	-	trx	Synpcc7942_1978	0.70	+0.3
2,049,886	+	trx	Synpcc7942_1978	0.72	+0.2
2,049,891	+	trx	Synpcc7942_1978	0.73	-2.6
2,049,891	+	trx	Synpcc7942_1978	0.73	-2.1
2,049,891	+	trx	Synpcc7942_1978	0.73	-1.6
2,049,899	-	trx	Synpcc7942_1978	0.76	+0.5
2,049,899	-	trx	Synpcc7942_1978	0.76	-1.1
2,049,899	-	trx	Synpcc7942_1978	0.76	-1.6
2,049,901	+	trx	Synpcc7942_1978	0.76	-0.1
2,049,901	+	trx	Synpcc7942_1978	0.76	-1.4
2,049,901	+	trx	Synpcc7942_1978	0.76	-0.2
2,049,944	-	trx	Synpcc7942_1978	0.89	+0.5
2,049,992	+				-1.8
2,049,992	+				+2.2
2,049,999	+				-2.1
2,049,999	+				+0.9
2,049,999	+				-1.1
2,049,999	+				+0.9
2,050,007	-				+0.6
2,050,026	+				+2.3
2,050,044	+				+0.7
2,050,069	+				-2.1
2,050,069	+				+0.3
2,050,069	+				+0.7
2,050,077	-				+1.4
2,050,077	-				+0.4
2,050,077	-				+0.6
2,050,077	-				-0.1
2,050,077	-				+0.8
2,050,087	-		Synpcc7942_1979	0.10	+1.0
2,050,137	+		Synpcc7942_1979	0.17	+2.5
2,050,196	+		Synpcc7942_1979	0.25	+0.8
2,050,196	+		Synpcc7942_1979	0.25	+2.0
2,050,203	+		Synpcc7942_1979	0.26	+0.9
2,050,204	-		Synpcc7942_1979	0.26	-1.4
2,050,241	+		Synpcc7942_1979	0.31	+1.2
2,050,246	+		Synpcc7942_1979	0.32	+1.4
2,050,249	-		Synpcc7942_1979	0.33	+2.5
2,050,249	-		Synpcc7942_1979	0.33	+1.6
2,050,307	+		Synpcc7942_1979	0.41	+1.4
2,050,315	-		Synpcc7942_1979	0.42	-0.6
2,050,315	-		Synpcc7942_1979	0.42	+0.8
2,050,340	+		Synpcc7942_1979	0.45	+0.7
2,050,354	-		Synpcc7942_1979	0.47	+1.3
2,050,356	-		Synpcc7942_1979	0.47	+1.3
2,050,403	-		Synpcc7942_1979	0.54	+0.2
2,050,407	+		Synpcc7942_1979	0.54	+1.1
2,050,438	-		Synpcc7942_1979	0.59	+0.3
2,050,438	-		Synpcc7942_1979	0.59	+0.8
2,050,452	-		Synpcc7942_1979	0.61	+0.7
2,050,452	-		Synpcc7942_1979	0.61	+0.9
2,050,454	+		Synpcc7942_1979	0.61	+0.4
2,050,454	+		Synpcc7942_1979	0.61	-0.2
2,050,462	-		Synpcc7942_1979	0.62	+0.8
2,050,475	+		Synpcc7942_1979	0.64	-2.6
2,050,503	-		Synpcc7942_1979	0.68	+2.9
2,050,506	+		Synpcc7942_1979	0.68	+0.8
2,050,516	+		Synpcc7942_1979	0.69	+1.9
2,050,516	+		Synpcc7942_1979	0.69	+0.9
2,050,521	+		Synpcc7942_1979	0.70	+0.9
2,050,521	+		Synpcc7942_1979	0.70	+2.2
2,050,524	-		Synpcc7942_1979	0.71	+1.0
2,050,531	+		Synpcc7942_1979	0.72	+0.9
2,050,573	+		Synpcc7942_1979	0.77	+0.7
2,050,581	-		Synpcc7942_1979	0.78	+1.1
2,050,601	+		Synpcc7942_1979	0.81	+1.4
2,050,642	+		Synpcc7942_1979	0.87	-1.2
2,050,644	-		Synpcc7942_1979	0.87	+1.5
2,050,661	+		Synpcc7942_1979	0.89	-0.5
2,050,717	-				+0.6
2,050,720	+				-0.6
2,050,728	-				-3.2
2,050,728	-				-2.1
2,050,732	+				+1.6
2,050,740	-				-2.4
2,050,788	+				+0.3
2,050,790	-				+0.5
2,050,790	-				-1.6
2,050,833	-				+1.4
2,050,888	-				+0.5
2,050,889	+				-0.2
2,050,889	+				+0.5
2,050,889	+				-2.2
2,050,889	+				+2.1
2,050,897	-				-0.5
2,050,907	-				+2.8