Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1899 and dcd are separated by 53 nucleotides dcd and Synpcc7942_1901 are separated by 44 nucleotides Synpcc7942_1901 and Synpcc7942_1902 are separated by 92 nucleotides
Synpcc7942_1899: Synpcc7942_1899 - hypothetical protein, at 1,972,290 to 1,972,778
_1899
Synpcc7942_1900: dcd - deoxycytidine triphosphate deaminase, at 1,972,832 to 1,973,413
dcd
Synpcc7942_1901: Synpcc7942_1901 - putative glycosyltransferase, at 1,973,458 to 1,975,839
_1901
Synpcc7942_1902: Synpcc7942_1902 - putative glycosyltransferase, at 1,975,932 to 1,976,978
_1902
Position (kb) 1973
1974
1975
1976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1972.481 kb on - strand, within Synpcc7942_1899 at 1972.488 kb on + strand, within Synpcc7942_1899 at 1972.490 kb on + strand, within Synpcc7942_1899 at 1972.490 kb on + strand, within Synpcc7942_1899 at 1972.495 kb on + strand, within Synpcc7942_1899 at 1972.498 kb on - strand, within Synpcc7942_1899 at 1972.521 kb on - strand, within Synpcc7942_1899 at 1972.521 kb on - strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.536 kb on - strand, within Synpcc7942_1899 at 1972.546 kb on + strand, within Synpcc7942_1899 at 1972.546 kb on + strand, within Synpcc7942_1899 at 1972.551 kb on + strand, within Synpcc7942_1899 at 1972.554 kb on - strand, within Synpcc7942_1899 at 1972.566 kb on - strand, within Synpcc7942_1899 at 1972.642 kb on - strand, within Synpcc7942_1899 at 1972.661 kb on - strand, within Synpcc7942_1899 at 1972.676 kb on + strand, within Synpcc7942_1899 at 1972.677 kb on - strand, within Synpcc7942_1899 at 1972.742 kb on - strand at 1972.747 kb on + strand at 1972.762 kb on + strand at 1972.762 kb on - strand at 1972.762 kb on - strand at 1972.770 kb on - strand at 1972.809 kb on - strand at 1973.397 kb on + strand at 1973.407 kb on + strand at 1973.407 kb on + strand at 1973.415 kb on - strand at 1973.415 kb on - strand at 1973.415 kb on - strand at 1973.494 kb on - strand at 1973.867 kb on - strand, within Synpcc7942_1901 at 1974.301 kb on - strand, within Synpcc7942_1901 at 1974.681 kb on + strand, within Synpcc7942_1901 at 1975.923 kb on - strand at 1976.080 kb on - strand, within Synpcc7942_1902 at 1976.664 kb on - strand, within Synpcc7942_1902 at 1976.675 kb on + strand, within Synpcc7942_1902
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 1,972,481 - Synpcc7942_1899 0.39 +1.7 1,972,488 + Synpcc7942_1899 0.40 -0.1 1,972,490 + Synpcc7942_1899 0.41 +1.2 1,972,490 + Synpcc7942_1899 0.41 +0.0 1,972,495 + Synpcc7942_1899 0.42 -0.5 1,972,498 - Synpcc7942_1899 0.43 -2.3 1,972,521 - Synpcc7942_1899 0.47 -0.3 1,972,521 - Synpcc7942_1899 0.47 -0.7 1,972,523 + Synpcc7942_1899 0.48 +0.0 1,972,523 + Synpcc7942_1899 0.48 +1.9 1,972,523 + Synpcc7942_1899 0.48 +0.1 1,972,531 - Synpcc7942_1899 0.49 -0.1 1,972,531 - Synpcc7942_1899 0.49 -0.1 1,972,531 - Synpcc7942_1899 0.49 +0.5 1,972,531 - Synpcc7942_1899 0.49 +0.4 1,972,536 - Synpcc7942_1899 0.50 -0.1 1,972,546 + Synpcc7942_1899 0.52 +2.7 1,972,546 + Synpcc7942_1899 0.52 -0.1 1,972,551 + Synpcc7942_1899 0.53 -1.1 1,972,554 - Synpcc7942_1899 0.54 +0.3 1,972,566 - Synpcc7942_1899 0.56 -0.7 1,972,642 - Synpcc7942_1899 0.72 -2.4 1,972,661 - Synpcc7942_1899 0.76 -0.1 1,972,676 + Synpcc7942_1899 0.79 -3.1 1,972,677 - Synpcc7942_1899 0.79 +0.6 1,972,742 - -0.1 1,972,747 + -0.5 1,972,762 + +3.1 1,972,762 - -0.1 1,972,762 - +0.3 1,972,770 - -2.9 1,972,809 - +2.0 1,973,397 + +1.1 1,973,407 + +1.7 1,973,407 + -0.6 1,973,415 - -0.6 1,973,415 - +0.3 1,973,415 - +0.4 1,973,494 - +2.0 1,973,867 - Synpcc7942_1901 0.17 +0.4 1,974,301 - Synpcc7942_1901 0.35 +1.5 1,974,681 + Synpcc7942_1901 0.51 +2.8 1,975,923 - +1.1 1,976,080 - Synpcc7942_1902 0.14 +1.4 1,976,664 - Synpcc7942_1902 0.70 +0.3 1,976,675 + Synpcc7942_1902 0.71 +2.3
Or see this region's nucleotide sequence