Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1779

Experiment: Ceftazidime 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 0.0625 mg/ml
1,842,943	+		Synpcc7942_1778	0.50	-0.7
1,842,943	+		Synpcc7942_1778	0.50	-1.0
1,842,943	+		Synpcc7942_1778	0.50	+0.9
1,842,951	-		Synpcc7942_1778	0.51	+1.4
1,842,951	-		Synpcc7942_1778	0.51	+0.1
1,842,951	-		Synpcc7942_1778	0.51	+0.6
1,842,963	+		Synpcc7942_1778	0.51	-1.2
1,842,994	+		Synpcc7942_1778	0.53	+0.0
1,843,012	+		Synpcc7942_1778	0.54	+0.6
1,843,017	-		Synpcc7942_1778	0.54	-0.5
1,843,017	-		Synpcc7942_1778	0.54	+0.8
1,843,020	-		Synpcc7942_1778	0.54	-1.5
1,843,036	+		Synpcc7942_1778	0.55	-0.5
1,843,239	+		Synpcc7942_1778	0.66	-0.5
1,843,247	-		Synpcc7942_1778	0.67	-1.7
1,843,320	+		Synpcc7942_1778	0.70	+0.3
1,843,320	+		Synpcc7942_1778	0.70	-0.1
1,843,329	-		Synpcc7942_1778	0.71	+0.9
1,843,354	+		Synpcc7942_1778	0.72	+0.5
1,843,360	+		Synpcc7942_1778	0.73	-0.1
1,843,391	+		Synpcc7942_1778	0.74	+2.0
1,843,395	+		Synpcc7942_1778	0.74	-0.5
1,843,406	+		Synpcc7942_1778	0.75	-0.4
1,843,409	-		Synpcc7942_1778	0.75	+0.3
1,843,414	-		Synpcc7942_1778	0.75	-1.9
1,843,414	-		Synpcc7942_1778	0.75	-2.9
1,843,416	+		Synpcc7942_1778	0.76	-1.6
1,843,440	+		Synpcc7942_1778	0.77	-0.4
1,843,445	+		Synpcc7942_1778	0.77	+3.1
1,843,472	+		Synpcc7942_1778	0.79	+0.7
1,843,473	+		Synpcc7942_1778	0.79	-0.1
1,843,480	+		Synpcc7942_1778	0.79	-0.7
1,843,491	+		Synpcc7942_1778	0.80	-1.1
1,843,536	+		Synpcc7942_1778	0.82	-2.4
1,843,557	-		Synpcc7942_1778	0.83	+1.0
1,843,581	+		Synpcc7942_1778	0.84	-1.1
1,843,581	+		Synpcc7942_1778	0.84	-1.8
1,843,581	+		Synpcc7942_1778	0.84	+0.3
1,843,589	-		Synpcc7942_1778	0.85	+1.8
1,843,589	-		Synpcc7942_1778	0.85	+0.6
1,843,599	-		Synpcc7942_1778	0.85	+0.7
1,843,610	+		Synpcc7942_1778	0.86	-0.7
1,843,615	+		Synpcc7942_1778	0.86	-0.1
1,843,615	+		Synpcc7942_1778	0.86	-0.5
1,843,615	+		Synpcc7942_1778	0.86	+0.5
1,843,618	-		Synpcc7942_1778	0.86	-0.1
1,843,625	+		Synpcc7942_1778	0.87	-2.1
1,843,726	+				-1.1
1,843,767	+				-0.5
1,843,792	-				+0.6
1,843,792	-				-1.7
1,843,803	+				-2.7
1,843,803	+				-1.1
1,843,803	+				+0.5
1,843,803	+				+0.6
1,843,833	-				+1.2
1,843,883	-				-1.1
1,843,917	+				+1.7
1,843,985	+				-1.1
1,843,985	+				-2.7
1,843,993	-				-0.1
1,844,008	-				-1.1
1,844,015	-				-1.7
1,844,024	-				-1.7
1,844,052	-				-2.7
1,844,071	-				-3.1
1,844,112	+				-2.7
1,844,135	-	recN	Synpcc7942_1779	0.11	-2.1
1,844,137	-	recN	Synpcc7942_1779	0.11	-1.7
1,844,159	+	recN	Synpcc7942_1779	0.12	-1.1
1,844,196	+	recN	Synpcc7942_1779	0.15	-2.1
1,844,196	+	recN	Synpcc7942_1779	0.15	-2.4
1,844,196	+	recN	Synpcc7942_1779	0.15	-1.7
1,844,196	+	recN	Synpcc7942_1779	0.15	-2.1
1,844,204	-	recN	Synpcc7942_1779	0.15	-1.1
1,844,218	-	recN	Synpcc7942_1779	0.16	-3.8
1,844,226	-				-0.1
1,844,237	-				-0.1
1,844,247	-	recN	Synpcc7942_1779	0.18	-3.4
1,844,252	-	recN	Synpcc7942_1779	0.18	-2.4
1,844,262	-	recN	Synpcc7942_1779	0.18	-1.1
1,844,331	+	recN	Synpcc7942_1779	0.22	-1.6
1,844,344	+	recN	Synpcc7942_1779	0.23	-2.7
1,844,362	-	recN	Synpcc7942_1779	0.24	-3.3
1,844,425	+	recN	Synpcc7942_1779	0.28	-2.4
1,844,425	+	recN	Synpcc7942_1779	0.28	-0.1
1,844,435	+	recN	Synpcc7942_1779	0.28	-1.5
1,844,435	+	recN	Synpcc7942_1779	0.28	-4.0
1,844,435	+	recN	Synpcc7942_1779	0.28	-3.4
1,844,435	+	recN	Synpcc7942_1779	0.28	-0.1
1,844,435	+	recN	Synpcc7942_1779	0.28	-3.9
1,844,443	-	recN	Synpcc7942_1779	0.29	-3.1
1,844,443	-	recN	Synpcc7942_1779	0.29	-2.1
1,844,454	-	recN	Synpcc7942_1779	0.29	-3.4
1,844,514	+	recN	Synpcc7942_1779	0.33	-3.4
1,844,538	+	recN	Synpcc7942_1779	0.34	-2.7
1,844,543	+				-1.1
1,844,590	-	recN	Synpcc7942_1779	0.37	-0.1
1,844,595	-	recN	Synpcc7942_1779	0.37	-2.7
1,844,614	+	recN	Synpcc7942_1779	0.39	-2.1
1,844,641	-	recN	Synpcc7942_1779	0.40	-2.1
1,844,642	+	recN	Synpcc7942_1779	0.40	-2.1
1,844,706	+	recN	Synpcc7942_1779	0.44	-0.1
1,844,712	+	recN	Synpcc7942_1779	0.44	-2.9
1,844,713	+	recN	Synpcc7942_1779	0.44	-2.1
1,844,721	-	recN	Synpcc7942_1779	0.45	-1.7
1,844,726	-	recN	Synpcc7942_1779	0.45	-1.7
1,844,731	+	recN	Synpcc7942_1779	0.45	-2.4
1,844,731	+	recN	Synpcc7942_1779	0.45	-1.4
1,844,731	+	recN	Synpcc7942_1779	0.45	+0.9
1,844,731	+				-1.1
1,844,736	+	recN	Synpcc7942_1779	0.46	-3.8
1,844,739	-	recN	Synpcc7942_1779	0.46	-1.9
1,844,739	-	recN	Synpcc7942_1779	0.46	-3.1
1,844,750	-	recN	Synpcc7942_1779	0.46	-3.1
1,844,807	+	recN	Synpcc7942_1779	0.50	+0.9
1,844,826	+	recN	Synpcc7942_1779	0.51	-2.1
1,844,826	+	recN	Synpcc7942_1779	0.51	-3.3
1,844,826	+	recN	Synpcc7942_1779	0.51	-2.7
1,844,826	+	recN	Synpcc7942_1779	0.51	-2.1
1,844,828	+	recN	Synpcc7942_1779	0.51	-3.1
1,844,834	+				-0.1
1,844,834	-				-0.1
1,844,834	-	recN	Synpcc7942_1779	0.51	-1.1
1,844,834	-	recN	Synpcc7942_1779	0.51	-1.1
1,844,834	-	recN	Synpcc7942_1779	0.51	-1.1
1,844,834	-	recN	Synpcc7942_1779	0.51	-2.4
1,844,834	-	recN	Synpcc7942_1779	0.51	-1.1
1,844,910	+	recN	Synpcc7942_1779	0.55	-2.4
1,844,913	-	recN	Synpcc7942_1779	0.56	-2.6
1,844,918	-	recN	Synpcc7942_1779	0.56	-1.1
1,844,922	+	recN	Synpcc7942_1779	0.56	-1.0
1,844,929	+	recN	Synpcc7942_1779	0.57	-1.7
1,844,941	+	recN	Synpcc7942_1779	0.57	-1.5
1,844,943	+	recN	Synpcc7942_1779	0.57	-1.1
1,844,989	+	recN	Synpcc7942_1779	0.60	-2.9
1,844,989	+	recN	Synpcc7942_1779	0.60	-1.7
1,844,990	+	recN	Synpcc7942_1779	0.60	-0.1
1,845,027	-	recN	Synpcc7942_1779	0.62	-2.9
1,845,054	+	recN	Synpcc7942_1779	0.64	-2.9
1,845,079	+	recN	Synpcc7942_1779	0.65	-3.8
1,845,087	-	recN	Synpcc7942_1779	0.66	-2.4
1,845,144	+	recN	Synpcc7942_1779	0.69	-3.3
1,845,170	-	recN	Synpcc7942_1779	0.70	-2.7
1,845,178	+	recN	Synpcc7942_1779	0.71	-4.0
1,845,254	-	recN	Synpcc7942_1779	0.75	-1.1
1,845,280	+	recN	Synpcc7942_1779	0.77	-2.4
1,845,318	+	recN	Synpcc7942_1779	0.79	-2.0
1,845,318	+	recN	Synpcc7942_1779	0.79	-0.9
1,845,326	-	recN	Synpcc7942_1779	0.79	+1.1
1,845,343	-	recN	Synpcc7942_1779	0.80	-2.4
1,845,350	+	recN	Synpcc7942_1779	0.81	-0.1
1,845,353	-	recN	Synpcc7942_1779	0.81	-2.7
1,845,403	+	recN	Synpcc7942_1779	0.84	-1.1
1,845,434	-	recN	Synpcc7942_1779	0.86	-2.1
1,845,458	+	recN	Synpcc7942_1779	0.87	-2.9
1,845,479	+	recN	Synpcc7942_1779	0.88	-3.6
1,845,479	+	recN	Synpcc7942_1779	0.88	-2.9
1,845,614	+				-1.1
1,845,661	+				+0.1
1,845,675	+				-1.1
1,845,678	-				-0.1
1,845,683	-				-0.9
1,845,683	-				-0.8
1,845,690	-				-0.3
1,845,693	-				+2.8
1,845,717	+				+2.9
1,845,747	-				+0.4
1,845,795	+				+1.6
1,845,813	-				-1.2
1,845,815	-				-2.4
1,845,848	-				-1.8
1,845,859	-				+2.0
1,845,902	-				-2.9
1,845,914	-				-2.1
1,845,914	-				+0.6
1,845,924	-	mutL	Synpcc7942_1780	0.10	+0.8
1,845,954	-	mutL	Synpcc7942_1780	0.12	-2.9
1,845,982	+	mutL	Synpcc7942_1780	0.14	-0.1
1,845,982	+	mutL	Synpcc7942_1780	0.14	+0.0
1,845,988	+	mutL	Synpcc7942_1780	0.14	+0.2
1,845,995	-	mutL	Synpcc7942_1780	0.14	+0.1
1,845,996	-	mutL	Synpcc7942_1780	0.15	+1.0
1,846,044	-	mutL	Synpcc7942_1780	0.17	+1.9
1,846,057	+	mutL	Synpcc7942_1780	0.18	-1.7
1,846,062	-	mutL	Synpcc7942_1780	0.19	-2.4
1,846,064	+	mutL	Synpcc7942_1780	0.19	-0.1
1,846,064	+	mutL	Synpcc7942_1780	0.19	-0.1
1,846,064	+	mutL	Synpcc7942_1780	0.19	+1.3
1,846,064	+	mutL	Synpcc7942_1780	0.19	+0.6
1,846,064	+	mutL	Synpcc7942_1780	0.19	+1.6
1,846,065	-	mutL	Synpcc7942_1780	0.19	+1.0
1,846,072	-	mutL	Synpcc7942_1780	0.19	+1.6
1,846,072	-	mutL	Synpcc7942_1780	0.19	+1.2
1,846,072	-	mutL	Synpcc7942_1780	0.19	-0.1
1,846,072	-	mutL	Synpcc7942_1780	0.19	-1.7
1,846,152	+	mutL	Synpcc7942_1780	0.24	+0.9
1,846,160	-	mutL	Synpcc7942_1780	0.25	+1.3
1,846,185	+	mutL	Synpcc7942_1780	0.26	+0.9
1,846,203	-	mutL	Synpcc7942_1780	0.27	-0.2
1,846,209	-	mutL	Synpcc7942_1780	0.28	+1.1
1,846,223	+				-0.1
1,846,223	+	mutL	Synpcc7942_1780	0.28	-1.7
1,846,229	+	mutL	Synpcc7942_1780	0.29	-0.0
1,846,229	+	mutL	Synpcc7942_1780	0.29	+0.5
1,846,231	-	mutL	Synpcc7942_1780	0.29	-2.9
1,846,231	-	mutL	Synpcc7942_1780	0.29	-0.1
1,846,263	+	mutL	Synpcc7942_1780	0.31	-3.6
1,846,329	-	mutL	Synpcc7942_1780	0.35	+2.2
1,846,344	+	mutL	Synpcc7942_1780	0.36	+2.9
1,846,344	+	mutL	Synpcc7942_1780	0.36	+0.5
1,846,344	+	mutL	Synpcc7942_1780	0.36	-0.9
1,846,363	-	mutL	Synpcc7942_1780	0.37	+0.2
1,846,381	-	mutL	Synpcc7942_1780	0.38	-2.9
1,846,383	-	mutL	Synpcc7942_1780	0.38	-0.8
1,846,401	+	mutL	Synpcc7942_1780	0.39	+1.0
1,846,401	+	mutL	Synpcc7942_1780	0.39	-1.8
1,846,401	+	mutL	Synpcc7942_1780	0.39	+0.5
1,846,401	+	mutL	Synpcc7942_1780	0.39	+0.7
1,846,406	+	mutL	Synpcc7942_1780	0.40	+0.2
1,846,409	-	mutL	Synpcc7942_1780	0.40	-2.4
1,846,409	-	mutL	Synpcc7942_1780	0.40	+0.8
1,846,414	-	mutL	Synpcc7942_1780	0.40	-1.1
1,846,415	-	mutL	Synpcc7942_1780	0.40	+0.7
1,846,436	+	mutL	Synpcc7942_1780	0.42	-0.1
1,846,436	+	mutL	Synpcc7942_1780	0.42	-2.1
1,846,464	-	mutL	Synpcc7942_1780	0.43	-1.1
1,846,464	-	mutL	Synpcc7942_1780	0.43	-0.5
1,846,523	-	mutL	Synpcc7942_1780	0.47	+0.1
1,846,523	-	mutL	Synpcc7942_1780	0.47	-2.7
1,846,523	-	mutL	Synpcc7942_1780	0.47	+0.9
1,846,528	+	mutL	Synpcc7942_1780	0.47	-0.1
1,846,528	+	mutL	Synpcc7942_1780	0.47	-0.8
1,846,535	+	mutL	Synpcc7942_1780	0.48	-1.7
1,846,563	-	mutL	Synpcc7942_1780	0.49	-2.1
1,846,563	-	mutL	Synpcc7942_1780	0.49	+0.6
1,846,585	+	mutL	Synpcc7942_1780	0.51	-0.7
1,846,620	-	mutL	Synpcc7942_1780	0.53	+3.0
1,846,647	-	mutL	Synpcc7942_1780	0.55	+0.6
1,846,671	+	mutL	Synpcc7942_1780	0.56	-1.1
1,846,671	+	mutL	Synpcc7942_1780	0.56	+1.0
1,846,679	-	mutL	Synpcc7942_1780	0.57	+0.5
1,846,681	+	mutL	Synpcc7942_1780	0.57	-1.1
1,846,685	-	mutL	Synpcc7942_1780	0.57	+1.8