Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1654

Experiment: Ceftazidime 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 0.0625 mg/ml
1,723,857	+	gldA	Synpcc7942_1653	0.26	+1.7
1,723,870	+	gldA	Synpcc7942_1653	0.28	+0.3
1,723,878	-	gldA	Synpcc7942_1653	0.28	+0.4
1,723,878	-	gldA	Synpcc7942_1653	0.28	-2.9
1,723,891	+	gldA	Synpcc7942_1653	0.29	+1.1
1,723,902	-	gldA	Synpcc7942_1653	0.30	-0.0
1,723,910	+	gldA	Synpcc7942_1653	0.31	+1.8
1,723,915	+	gldA	Synpcc7942_1653	0.31	+0.9
1,723,920	+	gldA	Synpcc7942_1653	0.32	-1.3
1,723,920	+	gldA	Synpcc7942_1653	0.32	-0.1
1,723,928	+	gldA	Synpcc7942_1653	0.32	+1.5
1,723,944	-	gldA	Synpcc7942_1653	0.34	+1.7
1,723,974	+	gldA	Synpcc7942_1653	0.36	+0.2
1,723,983	-	gldA	Synpcc7942_1653	0.37	-0.1
1,724,048	-	gldA	Synpcc7942_1653	0.42	-2.3
1,724,048	-	gldA	Synpcc7942_1653	0.42	-2.4
1,724,060	-	gldA	Synpcc7942_1653	0.43	+0.8
1,724,061	-	gldA	Synpcc7942_1653	0.44	-1.3
1,724,092	+	gldA	Synpcc7942_1653	0.46	+0.6
1,724,106	-	gldA	Synpcc7942_1653	0.47	-1.4
1,724,128	+	gldA	Synpcc7942_1653	0.49	+0.6
1,724,136	+	gldA	Synpcc7942_1653	0.50	-0.2
1,724,149	-	gldA	Synpcc7942_1653	0.51	+0.9
1,724,164	-	gldA	Synpcc7942_1653	0.52	+0.9
1,724,169	-	gldA	Synpcc7942_1653	0.53	+0.6
1,724,239	-	gldA	Synpcc7942_1653	0.58	-1.1
1,724,245	+	gldA	Synpcc7942_1653	0.59	+1.0
1,724,276	+	gldA	Synpcc7942_1653	0.61	+0.3
1,724,281	-	gldA	Synpcc7942_1653	0.62	+0.1
1,724,283	+	gldA	Synpcc7942_1653	0.62	+0.8
1,724,286	-	gldA	Synpcc7942_1653	0.62	-1.8
1,724,291	-	gldA	Synpcc7942_1653	0.63	-3.1
1,724,297	+	gldA	Synpcc7942_1653	0.63	-0.3
1,724,297	+	gldA	Synpcc7942_1653	0.63	-1.0
1,724,297	+	gldA	Synpcc7942_1653	0.63	+0.8
1,724,300	-	gldA	Synpcc7942_1653	0.63	-0.7
1,724,300	-	gldA	Synpcc7942_1653	0.63	+0.2
1,724,300	-	gldA	Synpcc7942_1653	0.63	-0.9
1,724,300	-	gldA	Synpcc7942_1653	0.63	+0.5
1,724,305	-	gldA	Synpcc7942_1653	0.64	+0.4
1,724,305	-	gldA	Synpcc7942_1653	0.64	-1.1
1,724,350	-	gldA	Synpcc7942_1653	0.68	+3.2
1,724,424	-	gldA	Synpcc7942_1653	0.74	+0.2
1,724,443	-	gldA	Synpcc7942_1653	0.75	+0.6
1,724,443	-	gldA	Synpcc7942_1653	0.75	+0.8
1,724,462	+	gldA	Synpcc7942_1653	0.77	+1.0
1,724,483	+	gldA	Synpcc7942_1653	0.79	+1.3
1,724,491	-	gldA	Synpcc7942_1653	0.79	+0.6
1,724,493	-	gldA	Synpcc7942_1653	0.80	+0.5
1,724,496	+	gldA	Synpcc7942_1653	0.80	-1.1
1,724,504	-	gldA	Synpcc7942_1653	0.81	-0.4
1,724,515	-	gldA	Synpcc7942_1653	0.81	+0.4
1,724,566	+	gldA	Synpcc7942_1653	0.86	+2.2
1,724,607	+	gldA	Synpcc7942_1653	0.89	-2.9
1,724,607	+	gldA	Synpcc7942_1653	0.89	+0.7
1,724,615	-	gldA	Synpcc7942_1653	0.90	-1.1
1,724,615	-	gldA	Synpcc7942_1653	0.90	-3.1
1,724,615	-	gldA	Synpcc7942_1653	0.90	+0.3
1,724,640	-				-0.8
1,724,642	-				+0.2
1,724,664	-				+2.1
1,724,703	-				+0.5
1,724,789	-				-2.9
1,724,921	+		Synpcc7942_1654	0.19	+1.4
1,724,929	-		Synpcc7942_1654	0.21	+0.4
1,724,929	-		Synpcc7942_1654	0.21	-2.6
1,724,933	+		Synpcc7942_1654	0.22	-1.8
1,724,955	-		Synpcc7942_1654	0.28	+1.0
1,724,972	+		Synpcc7942_1654	0.32	+1.8
1,724,999	+		Synpcc7942_1654	0.39	+0.9
1,725,006	+		Synpcc7942_1654	0.41	-0.5
1,725,072	-		Synpcc7942_1654	0.58	+0.4
1,725,121	+		Synpcc7942_1654	0.71	+0.5
1,725,129	-		Synpcc7942_1654	0.73	-0.1
1,725,135	+		Synpcc7942_1654	0.74	+1.3
1,725,143	-		Synpcc7942_1654	0.77	+0.9
1,725,162	+		Synpcc7942_1654	0.82	+0.1
1,725,256	-				+0.3
1,725,279	+				-2.1
1,725,321	-		Synpcc7942_1655	0.11	-0.3
1,725,502	+		Synpcc7942_1655	0.42	+1.4
1,725,510	-		Synpcc7942_1655	0.44	+0.3
1,725,564	-		Synpcc7942_1655	0.53	+1.0
1,725,613	+		Synpcc7942_1655	0.62	-2.4
1,725,743	+				-0.4
1,725,803	+				-1.3
1,725,911	+				+0.1
1,725,922	+				-0.1
1,725,922	+				-0.1
1,725,946	+				+0.5
1,725,963	-				+0.9
1,725,963	-				+1.3
1,726,014	+				+0.3
1,726,014	+				-0.6
1,726,014	+				-0.0
1,726,022	-				+0.4
1,726,022	-				-0.1
1,726,022	-				-1.1
1,726,022	-				+0.3
1,726,022	-				+0.1
1,726,022	-				+1.0
1,726,022	-				-3.6
1,726,033	-				+0.7
1,726,116	+				-1.1
1,726,198	+	katG	Synpcc7942_1656	0.13	-0.1
1,726,199	+	katG	Synpcc7942_1656	0.13	+0.3
1,726,208	-	katG	Synpcc7942_1656	0.13	+1.2
1,726,213	+	katG	Synpcc7942_1656	0.14	-1.9