Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pntB and pntA overlap by 1 nucleotides pntA and pntA overlap by 4 nucleotides
Synpcc7942_1610: pntB - pyridine nucleotide transhydrogenase beta subunit, at 1,678,977 to 1,680,389
pntB
Synpcc7942_1611: pntA - nicotinamide nucleotide transhydrogenase alpha subunit-like, at 1,680,389 to 1,680,682
pntA
Synpcc7942_1612: pntA - pyridine nucleotide transhydrogenase alpha subunit, at 1,680,679 to 1,681,905
pntA
Position (kb) 1680
1681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1679.394 kb on + strand, within pntB at 1679.402 kb on + strand, within pntB at 1679.402 kb on - strand, within pntB at 1679.406 kb on + strand, within pntB at 1679.409 kb on - strand, within pntB at 1679.410 kb on - strand, within pntB at 1679.410 kb on - strand, within pntB at 1679.430 kb on + strand, within pntB at 1679.430 kb on + strand, within pntB at 1679.453 kb on - strand, within pntB at 1679.464 kb on - strand, within pntB at 1679.466 kb on + strand, within pntB at 1679.540 kb on - strand, within pntB at 1679.566 kb on + strand, within pntB at 1679.576 kb on + strand, within pntB at 1679.595 kb on + strand, within pntB at 1679.595 kb on + strand, within pntB at 1679.595 kb on + strand, within pntB at 1679.595 kb on + strand, within pntB at 1679.596 kb on - strand, within pntB at 1679.602 kb on + strand, within pntB at 1679.603 kb on - strand, within pntB at 1679.603 kb on - strand, within pntB at 1679.625 kb on + strand, within pntB at 1679.630 kb on + strand, within pntB at 1679.633 kb on - strand, within pntB at 1679.638 kb on - strand, within pntB at 1679.681 kb on + strand, within pntB at 1679.681 kb on - strand, within pntB at 1679.681 kb on - strand, within pntB at 1679.719 kb on + strand, within pntB at 1679.719 kb on + strand, within pntB at 1679.721 kb on + strand, within pntB at 1679.727 kb on - strand, within pntB at 1679.729 kb on - strand, within pntB at 1679.746 kb on - strand, within pntB at 1679.748 kb on + strand, within pntB at 1679.752 kb on - strand, within pntB at 1679.763 kb on - strand, within pntB at 1679.789 kb on + strand, within pntB at 1679.792 kb on - strand, within pntB at 1679.802 kb on + strand, within pntB at 1679.848 kb on + strand, within pntB at 1679.853 kb on + strand, within pntB at 1679.856 kb on - strand, within pntB at 1679.858 kb on + strand, within pntB at 1679.866 kb on - strand, within pntB at 1679.877 kb on + strand, within pntB at 1679.903 kb on + strand, within pntB at 1679.903 kb on + strand, within pntB at 1679.904 kb on - strand, within pntB at 1679.904 kb on - strand, within pntB at 1679.909 kb on - strand, within pntB at 1679.919 kb on + strand, within pntB at 1679.919 kb on + strand, within pntB at 1679.920 kb on + strand, within pntB at 1679.926 kb on - strand, within pntB at 1679.927 kb on - strand, within pntB at 1679.927 kb on - strand, within pntB at 1679.928 kb on - strand, within pntB at 1679.928 kb on - strand, within pntB at 1679.963 kb on + strand, within pntB at 1679.963 kb on + strand, within pntB at 1679.981 kb on - strand, within pntB at 1680.003 kb on + strand, within pntB at 1680.004 kb on + strand, within pntB at 1680.012 kb on - strand, within pntB at 1680.014 kb on - strand, within pntB at 1680.022 kb on - strand, within pntB at 1680.025 kb on - strand, within pntB at 1680.035 kb on + strand, within pntB at 1680.048 kb on - strand, within pntB at 1680.053 kb on - strand, within pntB at 1680.106 kb on + strand, within pntB at 1680.108 kb on + strand, within pntB at 1680.108 kb on + strand, within pntB at 1680.115 kb on + strand, within pntB at 1680.116 kb on - strand, within pntB at 1680.123 kb on - strand, within pntB at 1680.133 kb on - strand, within pntB at 1680.158 kb on - strand, within pntB at 1680.160 kb on - strand, within pntB at 1680.189 kb on + strand, within pntB at 1680.194 kb on + strand, within pntB at 1680.194 kb on + strand, within pntB at 1680.223 kb on + strand, within pntB at 1680.235 kb on + strand, within pntB at 1680.247 kb on + strand, within pntB at 1680.249 kb on + strand at 1680.257 kb on + strand at 1680.257 kb on - strand at 1680.277 kb on + strand at 1680.280 kb on + strand at 1680.288 kb on - strand at 1680.315 kb on + strand at 1680.318 kb on - strand at 1680.323 kb on + strand at 1680.378 kb on + strand at 1680.413 kb on - strand at 1680.413 kb on - strand at 1680.413 kb on - strand at 1680.438 kb on - strand, within pntA at 1680.444 kb on - strand, within pntA at 1680.454 kb on + strand, within pntA at 1680.454 kb on + strand, within pntA at 1680.516 kb on + strand, within pntA at 1680.518 kb on + strand, within pntA at 1680.518 kb on + strand, within pntA at 1680.524 kb on - strand, within pntA at 1680.526 kb on - strand, within pntA at 1680.544 kb on + strand, within pntA at 1680.544 kb on + strand, within pntA at 1680.547 kb on - strand at 1680.590 kb on - strand at 1680.624 kb on - strand, within pntA at 1680.624 kb on - strand, within pntA at 1680.624 kb on - strand, within pntA at 1680.649 kb on - strand, within pntA at 1680.649 kb on - strand, within pntA at 1680.665 kb on - strand at 1680.694 kb on - strand at 1680.706 kb on - strand at 1680.712 kb on - strand at 1680.712 kb on - strand at 1680.712 kb on - strand at 1680.712 kb on - strand at 1680.742 kb on + strand at 1680.752 kb on - strand at 1680.787 kb on + strand at 1680.789 kb on + strand at 1680.864 kb on + strand, within pntA at 1680.864 kb on + strand, within pntA at 1680.864 kb on + strand, within pntA at 1680.872 kb on - strand, within pntA at 1680.926 kb on + strand, within pntA at 1680.926 kb on + strand, within pntA at 1680.934 kb on - strand, within pntA at 1680.939 kb on - strand, within pntA at 1680.980 kb on + strand at 1680.988 kb on - strand, within pntA at 1681.006 kb on - strand, within pntA at 1681.074 kb on + strand, within pntA at 1681.074 kb on + strand, within pntA at 1681.074 kb on + strand, within pntA at 1681.074 kb on + strand, within pntA at 1681.082 kb on - strand, within pntA at 1681.092 kb on - strand, within pntA at 1681.115 kb on - strand, within pntA at 1681.121 kb on + strand, within pntA at 1681.125 kb on - strand, within pntA at 1681.131 kb on + strand, within pntA at 1681.131 kb on + strand, within pntA at 1681.131 kb on + strand, within pntA at 1681.131 kb on + strand, within pntA at 1681.131 kb on + strand, within pntA at 1681.131 kb on + strand, within pntA at 1681.131 kb on + strand, within pntA at 1681.131 kb on + strand, within pntA at 1681.136 kb on + strand, within pntA at 1681.139 kb on - strand, within pntA at 1681.139 kb on - strand, within pntA at 1681.139 kb on - strand, within pntA at 1681.139 kb on - strand, within pntA at 1681.150 kb on + strand, within pntA at 1681.158 kb on - strand, within pntA at 1681.159 kb on - strand, within pntA at 1681.160 kb on - strand, within pntA at 1681.163 kb on - strand, within pntA at 1681.165 kb on + strand, within pntA at 1681.198 kb on + strand, within pntA at 1681.206 kb on - strand, within pntA at 1681.206 kb on - strand, within pntA at 1681.206 kb on - strand, within pntA at 1681.220 kb on + strand, within pntA at 1681.230 kb on - strand, within pntA at 1681.231 kb on + strand, within pntA at 1681.238 kb on - strand, within pntA at 1681.238 kb on - strand, within pntA at 1681.293 kb on + strand, within pntA at 1681.328 kb on + strand, within pntA at 1681.334 kb on - strand, within pntA at 1681.340 kb on + strand, within pntA at 1681.374 kb on - strand, within pntA at 1681.391 kb on + strand, within pntA at 1681.414 kb on + strand, within pntA at 1681.423 kb on + strand, within pntA at 1681.424 kb on - strand, within pntA at 1681.447 kb on - strand, within pntA at 1681.448 kb on + strand, within pntA at 1681.448 kb on + strand, within pntA at 1681.467 kb on + strand, within pntA at 1681.489 kb on + strand, within pntA at 1681.492 kb on - strand, within pntA at 1681.492 kb on - strand, within pntA at 1681.492 kb on - strand, within pntA at 1681.516 kb on + strand, within pntA at 1681.534 kb on - strand, within pntA at 1681.573 kb on + strand, within pntA at 1681.573 kb on + strand, within pntA at 1681.579 kb on - strand, within pntA at 1681.581 kb on - strand, within pntA at 1681.610 kb on + strand, within pntA at 1681.639 kb on - strand, within pntA at 1681.647 kb on + strand, within pntA at 1681.655 kb on + strand, within pntA at 1681.670 kb on - strand, within pntA
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 1,679,394 + pntB Synpcc7942_1610 0.30 -0.5 1,679,402 + pntB Synpcc7942_1610 0.30 +3.3 1,679,402 - pntB Synpcc7942_1610 0.30 -1.1 1,679,406 + pntB Synpcc7942_1610 0.30 -0.7 1,679,409 - pntB Synpcc7942_1610 0.31 -0.1 1,679,410 - pntB Synpcc7942_1610 0.31 +0.6 1,679,410 - pntB Synpcc7942_1610 0.31 -0.1 1,679,430 + pntB Synpcc7942_1610 0.32 +3.4 1,679,430 + pntB Synpcc7942_1610 0.32 +2.3 1,679,453 - pntB Synpcc7942_1610 0.34 -0.4 1,679,464 - pntB Synpcc7942_1610 0.34 +0.6 1,679,466 + pntB Synpcc7942_1610 0.35 -0.4 1,679,540 - pntB Synpcc7942_1610 0.40 +0.9 1,679,566 + pntB Synpcc7942_1610 0.42 +0.5 1,679,576 + pntB Synpcc7942_1610 0.42 +1.9 1,679,595 + pntB Synpcc7942_1610 0.44 +0.7 1,679,595 + pntB Synpcc7942_1610 0.44 -0.1 1,679,595 + pntB Synpcc7942_1610 0.44 -2.6 1,679,595 + pntB Synpcc7942_1610 0.44 +0.1 1,679,596 - pntB Synpcc7942_1610 0.44 +1.1 1,679,602 + pntB Synpcc7942_1610 0.44 +0.1 1,679,603 - pntB Synpcc7942_1610 0.44 -1.1 1,679,603 - pntB Synpcc7942_1610 0.44 +1.2 1,679,625 + pntB Synpcc7942_1610 0.46 -2.1 1,679,630 + pntB Synpcc7942_1610 0.46 -0.2 1,679,633 - pntB Synpcc7942_1610 0.46 +2.4 1,679,638 - pntB Synpcc7942_1610 0.47 +0.2 1,679,681 + pntB Synpcc7942_1610 0.50 +1.5 1,679,681 - pntB Synpcc7942_1610 0.50 -2.1 1,679,681 - pntB Synpcc7942_1610 0.50 -2.1 1,679,719 + pntB Synpcc7942_1610 0.53 -2.6 1,679,719 + pntB Synpcc7942_1610 0.53 +0.1 1,679,721 + pntB Synpcc7942_1610 0.53 +0.9 1,679,727 - pntB Synpcc7942_1610 0.53 -0.8 1,679,729 - pntB Synpcc7942_1610 0.53 -0.1 1,679,746 - pntB Synpcc7942_1610 0.54 +0.8 1,679,748 + pntB Synpcc7942_1610 0.55 -2.6 1,679,752 - pntB Synpcc7942_1610 0.55 -1.6 1,679,763 - pntB Synpcc7942_1610 0.56 -0.1 1,679,789 + pntB Synpcc7942_1610 0.57 +0.7 1,679,792 - pntB Synpcc7942_1610 0.58 -1.1 1,679,802 + pntB Synpcc7942_1610 0.58 +0.5 1,679,848 + pntB Synpcc7942_1610 0.62 +0.8 1,679,853 + pntB Synpcc7942_1610 0.62 +1.7 1,679,856 - pntB Synpcc7942_1610 0.62 +0.4 1,679,858 + pntB Synpcc7942_1610 0.62 -1.1 1,679,866 - pntB Synpcc7942_1610 0.63 +2.3 1,679,877 + pntB Synpcc7942_1610 0.64 -3.1 1,679,903 + pntB Synpcc7942_1610 0.66 -0.8 1,679,903 + pntB Synpcc7942_1610 0.66 +0.4 1,679,904 - pntB Synpcc7942_1610 0.66 -0.4 1,679,904 - pntB Synpcc7942_1610 0.66 +0.4 1,679,909 - pntB Synpcc7942_1610 0.66 -0.9 1,679,919 + pntB Synpcc7942_1610 0.67 +0.5 1,679,919 + pntB Synpcc7942_1610 0.67 -0.3 1,679,920 + pntB Synpcc7942_1610 0.67 -0.1 1,679,926 - pntB Synpcc7942_1610 0.67 -1.8 1,679,927 - pntB Synpcc7942_1610 0.67 -1.1 1,679,927 - pntB Synpcc7942_1610 0.67 -1.8 1,679,928 - pntB Synpcc7942_1610 0.67 -0.1 1,679,928 - pntB Synpcc7942_1610 0.67 -1.6 1,679,963 + pntB Synpcc7942_1610 0.70 -1.5 1,679,963 + pntB Synpcc7942_1610 0.70 -0.6 1,679,981 - pntB Synpcc7942_1610 0.71 +1.3 1,680,003 + pntB Synpcc7942_1610 0.73 -1.1 1,680,004 + pntB Synpcc7942_1610 0.73 -2.1 1,680,012 - pntB Synpcc7942_1610 0.73 +0.7 1,680,014 - pntB Synpcc7942_1610 0.73 +2.0 1,680,022 - pntB Synpcc7942_1610 0.74 -0.7 1,680,025 - pntB Synpcc7942_1610 0.74 -1.6 1,680,035 + pntB Synpcc7942_1610 0.75 +0.9 1,680,048 - pntB Synpcc7942_1610 0.76 +1.2 1,680,053 - pntB Synpcc7942_1610 0.76 -1.3 1,680,106 + pntB Synpcc7942_1610 0.80 -0.9 1,680,108 + pntB Synpcc7942_1610 0.80 -2.4 1,680,108 + pntB Synpcc7942_1610 0.80 +0.6 1,680,115 + pntB Synpcc7942_1610 0.81 -0.7 1,680,116 - pntB Synpcc7942_1610 0.81 +0.9 1,680,123 - pntB Synpcc7942_1610 0.81 -0.1 1,680,133 - pntB Synpcc7942_1610 0.82 +1.3 1,680,158 - pntB Synpcc7942_1610 0.84 +0.9 1,680,160 - pntB Synpcc7942_1610 0.84 -1.1 1,680,189 + pntB Synpcc7942_1610 0.86 -2.6 1,680,194 + pntB Synpcc7942_1610 0.86 +1.2 1,680,194 + pntB Synpcc7942_1610 0.86 +2.3 1,680,223 + pntB Synpcc7942_1610 0.88 +0.7 1,680,235 + pntB Synpcc7942_1610 0.89 -0.9 1,680,247 + pntB Synpcc7942_1610 0.90 +0.1 1,680,249 + +1.5 1,680,257 + -0.1 1,680,257 - -1.1 1,680,277 + +1.0 1,680,280 + -0.3 1,680,288 - -1.6 1,680,315 + +1.6 1,680,318 - -1.1 1,680,323 + +0.5 1,680,378 + +0.8 1,680,413 - -0.1 1,680,413 - -1.1 1,680,413 - -0.4 1,680,438 - pntA Synpcc7942_1611 0.17 +0.9 1,680,444 - pntA Synpcc7942_1611 0.19 +1.3 1,680,454 + pntA Synpcc7942_1611 0.22 -0.1 1,680,454 + pntA Synpcc7942_1611 0.22 +1.2 1,680,516 + pntA Synpcc7942_1611 0.43 +0.6 1,680,518 + pntA Synpcc7942_1611 0.44 +1.3 1,680,518 + pntA Synpcc7942_1611 0.44 +0.2 1,680,524 - pntA Synpcc7942_1611 0.46 -0.1 1,680,526 - pntA Synpcc7942_1611 0.47 +0.5 1,680,544 + pntA Synpcc7942_1611 0.53 -0.1 1,680,544 + pntA Synpcc7942_1611 0.53 +1.6 1,680,547 - -2.1 1,680,590 - -0.4 1,680,624 - pntA Synpcc7942_1611 0.80 +0.6 1,680,624 - pntA Synpcc7942_1611 0.80 +1.7 1,680,624 - pntA Synpcc7942_1611 0.80 -2.9 1,680,649 - pntA Synpcc7942_1611 0.88 +1.2 1,680,649 - pntA Synpcc7942_1611 0.88 +1.0 1,680,665 - +1.3 1,680,694 - -3.1 1,680,706 - -0.7 1,680,712 - -0.3 1,680,712 - +1.4 1,680,712 - -1.4 1,680,712 - +0.3 1,680,742 + -2.4 1,680,752 - +1.9 1,680,787 + -2.6 1,680,789 + +0.8 1,680,864 + pntA Synpcc7942_1612 0.15 +0.8 1,680,864 + pntA Synpcc7942_1612 0.15 +0.3 1,680,864 + pntA Synpcc7942_1612 0.15 +1.5 1,680,872 - pntA Synpcc7942_1612 0.16 +0.9 1,680,926 + pntA Synpcc7942_1612 0.20 +0.9 1,680,926 + pntA Synpcc7942_1612 0.20 +1.3 1,680,934 - pntA Synpcc7942_1612 0.21 +0.2 1,680,939 - pntA Synpcc7942_1612 0.21 +0.2 1,680,980 + -0.1 1,680,988 - pntA Synpcc7942_1612 0.25 +0.1 1,681,006 - pntA Synpcc7942_1612 0.27 -0.4 1,681,074 + pntA Synpcc7942_1612 0.32 +1.3 1,681,074 + pntA Synpcc7942_1612 0.32 -1.1 1,681,074 + pntA Synpcc7942_1612 0.32 -2.1 1,681,074 + pntA Synpcc7942_1612 0.32 +0.9 1,681,082 - pntA Synpcc7942_1612 0.33 -0.5 1,681,092 - pntA Synpcc7942_1612 0.34 +1.0 1,681,115 - pntA Synpcc7942_1612 0.36 -0.5 1,681,121 + pntA Synpcc7942_1612 0.36 -0.5 1,681,125 - pntA Synpcc7942_1612 0.36 -0.2 1,681,131 + pntA Synpcc7942_1612 0.37 +2.8 1,681,131 + pntA Synpcc7942_1612 0.37 +0.9 1,681,131 + pntA Synpcc7942_1612 0.37 +1.2 1,681,131 + pntA Synpcc7942_1612 0.37 -1.1 1,681,131 + pntA Synpcc7942_1612 0.37 -1.6 1,681,131 + pntA Synpcc7942_1612 0.37 +0.6 1,681,131 + pntA Synpcc7942_1612 0.37 -1.6 1,681,131 + pntA Synpcc7942_1612 0.37 -0.1 1,681,136 + pntA Synpcc7942_1612 0.37 -2.9 1,681,139 - pntA Synpcc7942_1612 0.37 -2.4 1,681,139 - pntA Synpcc7942_1612 0.37 +0.6 1,681,139 - pntA Synpcc7942_1612 0.37 -1.1 1,681,139 - pntA Synpcc7942_1612 0.37 -0.6 1,681,150 + pntA Synpcc7942_1612 0.38 -0.3 1,681,158 - pntA Synpcc7942_1612 0.39 +2.2 1,681,159 - pntA Synpcc7942_1612 0.39 +0.2 1,681,160 - pntA Synpcc7942_1612 0.39 -2.6 1,681,163 - pntA Synpcc7942_1612 0.39 +2.0 1,681,165 + pntA Synpcc7942_1612 0.40 +1.5 1,681,198 + pntA Synpcc7942_1612 0.42 -2.1 1,681,206 - pntA Synpcc7942_1612 0.43 -0.2 1,681,206 - pntA Synpcc7942_1612 0.43 -1.3 1,681,206 - pntA Synpcc7942_1612 0.43 -0.8 1,681,220 + pntA Synpcc7942_1612 0.44 -0.2 1,681,230 - pntA Synpcc7942_1612 0.45 -1.2 1,681,231 + pntA Synpcc7942_1612 0.45 -0.2 1,681,238 - pntA Synpcc7942_1612 0.46 -2.1 1,681,238 - pntA Synpcc7942_1612 0.46 +0.3 1,681,293 + pntA Synpcc7942_1612 0.50 -1.6 1,681,328 + pntA Synpcc7942_1612 0.53 -0.9 1,681,334 - pntA Synpcc7942_1612 0.53 -1.6 1,681,340 + pntA Synpcc7942_1612 0.54 +1.2 1,681,374 - pntA Synpcc7942_1612 0.57 +2.3 1,681,391 + pntA Synpcc7942_1612 0.58 +0.9 1,681,414 + pntA Synpcc7942_1612 0.60 +1.7 1,681,423 + pntA Synpcc7942_1612 0.61 +2.7 1,681,424 - pntA Synpcc7942_1612 0.61 +1.0 1,681,447 - pntA Synpcc7942_1612 0.63 -0.6 1,681,448 + pntA Synpcc7942_1612 0.63 +0.7 1,681,448 + pntA Synpcc7942_1612 0.63 -1.1 1,681,467 + pntA Synpcc7942_1612 0.64 +1.5 1,681,489 + pntA Synpcc7942_1612 0.66 +0.4 1,681,492 - pntA Synpcc7942_1612 0.66 +1.3 1,681,492 - pntA Synpcc7942_1612 0.66 +1.9 1,681,492 - pntA Synpcc7942_1612 0.66 +2.4 1,681,516 + pntA Synpcc7942_1612 0.68 +0.9 1,681,534 - pntA Synpcc7942_1612 0.70 +0.2 1,681,573 + pntA Synpcc7942_1612 0.73 -0.1 1,681,573 + pntA Synpcc7942_1612 0.73 -0.8 1,681,579 - pntA Synpcc7942_1612 0.73 +1.0 1,681,581 - pntA Synpcc7942_1612 0.74 -0.7 1,681,610 + pntA Synpcc7942_1612 0.76 +0.3 1,681,639 - pntA Synpcc7942_1612 0.78 -1.2 1,681,647 + pntA Synpcc7942_1612 0.79 -1.1 1,681,655 + pntA Synpcc7942_1612 0.80 -0.5 1,681,670 - pntA Synpcc7942_1612 0.81 +0.9
Or see this region's nucleotide sequence