Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1385

Experiment: Ceftazidime 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntppa and Synpcc7942_1384 are separated by 127 nucleotidesSynpcc7942_1384 and Synpcc7942_1385 are separated by 1 nucleotidesSynpcc7942_1385 and Synpcc7942_1386 are separated by 120 nucleotides Synpcc7942_1383: ppa - Inorganic diphosphatase, at 1,429,798 to 1,430,310 ppa Synpcc7942_1384: Synpcc7942_1384 - hypothetical protein, at 1,430,438 to 1,431,283 _1384 Synpcc7942_1385: Synpcc7942_1385 - hypothetical protein, at 1,431,285 to 1,431,506 _1385 Synpcc7942_1386: Synpcc7942_1386 - hypothetical protein, at 1,431,627 to 1,432,760 _1386 Position (kb) 1431 1432Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1430.392 kb on - strandat 1430.438 kb on + strandat 1430.479 kb on + strandat 1430.487 kb on - strandat 1430.487 kb on - strandat 1430.510 kb on + strandat 1430.510 kb on - strandat 1430.530 kb on + strand, within Synpcc7942_1384at 1430.538 kb on - strand, within Synpcc7942_1384at 1430.541 kb on + strand, within Synpcc7942_1384at 1430.541 kb on + strand, within Synpcc7942_1384at 1430.543 kb on - strand, within Synpcc7942_1384at 1430.549 kb on - strand, within Synpcc7942_1384at 1430.549 kb on - strand, within Synpcc7942_1384at 1430.556 kb on + strand, within Synpcc7942_1384at 1430.557 kb on + strand, within Synpcc7942_1384at 1430.559 kb on - strand, within Synpcc7942_1384at 1430.571 kb on + strand, within Synpcc7942_1384at 1430.627 kb on + strand, within Synpcc7942_1384at 1430.637 kb on + strand, within Synpcc7942_1384at 1430.637 kb on + strand, within Synpcc7942_1384at 1430.660 kb on + strand, within Synpcc7942_1384at 1430.678 kb on - strand, within Synpcc7942_1384at 1430.686 kb on - strand, within Synpcc7942_1384at 1430.736 kb on - strand, within Synpcc7942_1384at 1430.736 kb on - strand, within Synpcc7942_1384at 1430.757 kb on - strand, within Synpcc7942_1384at 1430.762 kb on + strand, within Synpcc7942_1384at 1430.763 kb on + strand, within Synpcc7942_1384at 1430.763 kb on + strand, within Synpcc7942_1384at 1430.764 kb on - strand, within Synpcc7942_1384at 1430.768 kb on + strand, within Synpcc7942_1384at 1430.770 kb on - strand, within Synpcc7942_1384at 1430.779 kb on - strand, within Synpcc7942_1384at 1430.836 kb on + strand, within Synpcc7942_1384at 1430.836 kb on + strand, within Synpcc7942_1384at 1430.843 kb on + strand, within Synpcc7942_1384at 1430.844 kb on - strand, within Synpcc7942_1384at 1430.845 kb on - strand, within Synpcc7942_1384at 1430.851 kb on - strand, within Synpcc7942_1384at 1430.851 kb on - strand, within Synpcc7942_1384at 1430.881 kb on - strand, within Synpcc7942_1384at 1430.897 kb on + strand, within Synpcc7942_1384at 1430.928 kb on - strand, within Synpcc7942_1384at 1430.940 kb on - strand, within Synpcc7942_1384at 1430.940 kb on - strandat 1430.941 kb on - strand, within Synpcc7942_1384at 1430.956 kb on + strand, within Synpcc7942_1384at 1430.984 kb on - strand, within Synpcc7942_1384at 1430.985 kb on - strand, within Synpcc7942_1384at 1430.985 kb on - strand, within Synpcc7942_1384at 1431.031 kb on - strand, within Synpcc7942_1384at 1431.040 kb on + strand, within Synpcc7942_1384at 1431.041 kb on - strand, within Synpcc7942_1384at 1431.100 kb on + strand, within Synpcc7942_1384at 1431.134 kb on + strand, within Synpcc7942_1384at 1431.136 kb on + strand, within Synpcc7942_1384at 1431.144 kb on - strand, within Synpcc7942_1384at 1431.154 kb on - strand, within Synpcc7942_1384at 1431.154 kb on - strand, within Synpcc7942_1384at 1431.154 kb on - strand, within Synpcc7942_1384at 1431.168 kb on + strand, within Synpcc7942_1384at 1431.224 kb on + strandat 1431.224 kb on + strandat 1431.226 kb on + strandat 1431.226 kb on + strandat 1431.226 kb on + strandat 1431.226 kb on - strandat 1431.247 kb on - strandat 1431.247 kb on - strandat 1431.279 kb on - strandat 1431.279 kb on - strandat 1431.292 kb on + strandat 1431.292 kb on + strandat 1431.292 kb on + strandat 1431.331 kb on + strand, within Synpcc7942_1385at 1431.336 kb on + strand, within Synpcc7942_1385at 1431.336 kb on + strand, within Synpcc7942_1385at 1431.344 kb on - strand, within Synpcc7942_1385at 1431.363 kb on + strand, within Synpcc7942_1385at 1431.370 kb on + strand, within Synpcc7942_1385at 1431.383 kb on + strand, within Synpcc7942_1385at 1431.383 kb on + strand, within Synpcc7942_1385at 1431.383 kb on - strand, within Synpcc7942_1385at 1431.384 kb on + strand, within Synpcc7942_1385at 1431.389 kb on - strand, within Synpcc7942_1385at 1431.391 kb on - strand, within Synpcc7942_1385at 1431.391 kb on - strand, within Synpcc7942_1385at 1431.391 kb on - strand, within Synpcc7942_1385at 1431.392 kb on - strand, within Synpcc7942_1385at 1431.418 kb on - strand, within Synpcc7942_1385at 1431.433 kb on - strand, within Synpcc7942_1385at 1431.445 kb on + strand, within Synpcc7942_1385at 1431.445 kb on + strandat 1431.458 kb on - strand, within Synpcc7942_1385at 1431.461 kb on + strand, within Synpcc7942_1385at 1431.511 kb on + strandat 1431.536 kb on - strandat 1431.544 kb on - strandat 1431.550 kb on - strandat 1431.561 kb on + strandat 1431.569 kb on - strandat 1431.623 kb on - strandat 1431.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml
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1,430,392 - +0.0
1,430,438 + -0.1
1,430,479 + -0.5
1,430,487 - +0.3
1,430,487 - -0.4
1,430,510 + -0.2
1,430,510 - -2.4
1,430,530 + Synpcc7942_1384 0.11 -0.0
1,430,538 - Synpcc7942_1384 0.12 +0.5
1,430,541 + Synpcc7942_1384 0.12 +2.1
1,430,541 + Synpcc7942_1384 0.12 -0.3
1,430,543 - Synpcc7942_1384 0.12 +2.3
1,430,549 - Synpcc7942_1384 0.13 +0.9
1,430,549 - Synpcc7942_1384 0.13 +0.8
1,430,556 + Synpcc7942_1384 0.14 -2.1
1,430,557 + Synpcc7942_1384 0.14 -1.1
1,430,559 - Synpcc7942_1384 0.14 -0.4
1,430,571 + Synpcc7942_1384 0.16 -0.2
1,430,627 + Synpcc7942_1384 0.22 -0.1
1,430,637 + Synpcc7942_1384 0.24 +2.2
1,430,637 + Synpcc7942_1384 0.24 +0.3
1,430,660 + Synpcc7942_1384 0.26 +0.3
1,430,678 - Synpcc7942_1384 0.28 +1.1
1,430,686 - Synpcc7942_1384 0.29 +0.0
1,430,736 - Synpcc7942_1384 0.35 +0.6
1,430,736 - Synpcc7942_1384 0.35 +2.7
1,430,757 - Synpcc7942_1384 0.38 -0.0
1,430,762 + Synpcc7942_1384 0.38 +0.7
1,430,763 + Synpcc7942_1384 0.38 -0.1
1,430,763 + Synpcc7942_1384 0.38 +0.4
1,430,764 - Synpcc7942_1384 0.39 -0.2
1,430,768 + Synpcc7942_1384 0.39 -0.4
1,430,770 - Synpcc7942_1384 0.39 -2.4
1,430,779 - Synpcc7942_1384 0.40 +0.3
1,430,836 + Synpcc7942_1384 0.47 +0.6
1,430,836 + Synpcc7942_1384 0.47 +0.3
1,430,843 + Synpcc7942_1384 0.48 +1.7
1,430,844 - Synpcc7942_1384 0.48 -0.7
1,430,845 - Synpcc7942_1384 0.48 +2.3
1,430,851 - Synpcc7942_1384 0.49 +1.0
1,430,851 - Synpcc7942_1384 0.49 -2.1
1,430,881 - Synpcc7942_1384 0.52 +0.3
1,430,897 + Synpcc7942_1384 0.54 -0.6
1,430,928 - Synpcc7942_1384 0.58 +2.0
1,430,940 - Synpcc7942_1384 0.59 +2.1
1,430,940 - -0.1
1,430,941 - Synpcc7942_1384 0.59 -2.1
1,430,956 + Synpcc7942_1384 0.61 +0.1
1,430,984 - Synpcc7942_1384 0.65 -2.1
1,430,985 - Synpcc7942_1384 0.65 -2.4
1,430,985 - Synpcc7942_1384 0.65 +0.1
1,431,031 - Synpcc7942_1384 0.70 +1.1
1,431,040 + Synpcc7942_1384 0.71 +0.9
1,431,041 - Synpcc7942_1384 0.71 +0.8
1,431,100 + Synpcc7942_1384 0.78 +0.0
1,431,134 + Synpcc7942_1384 0.82 +1.4
1,431,136 + Synpcc7942_1384 0.83 -1.1
1,431,144 - Synpcc7942_1384 0.83 -0.7
1,431,154 - Synpcc7942_1384 0.85 -1.1
1,431,154 - Synpcc7942_1384 0.85 -0.3
1,431,154 - Synpcc7942_1384 0.85 +1.9
1,431,168 + Synpcc7942_1384 0.86 -2.4
1,431,224 + +0.9
1,431,224 + -1.1
1,431,226 + +1.3
1,431,226 + -0.2
1,431,226 + -2.1
1,431,226 - +0.1
1,431,247 - +3.6
1,431,247 - -0.2
1,431,279 - -3.1
1,431,279 - +1.8
1,431,292 + +0.9
1,431,292 + -1.6
1,431,292 + -1.1
1,431,331 + Synpcc7942_1385 0.21 +0.9
1,431,336 + Synpcc7942_1385 0.23 -2.4
1,431,336 + Synpcc7942_1385 0.23 +0.9
1,431,344 - Synpcc7942_1385 0.27 -1.7
1,431,363 + Synpcc7942_1385 0.35 -0.8
1,431,370 + Synpcc7942_1385 0.38 +0.4
1,431,383 + Synpcc7942_1385 0.44 +0.4
1,431,383 + Synpcc7942_1385 0.44 +1.9
1,431,383 - Synpcc7942_1385 0.44 +0.2
1,431,384 + Synpcc7942_1385 0.45 -0.1
1,431,389 - Synpcc7942_1385 0.47 +0.6
1,431,391 - Synpcc7942_1385 0.48 -0.1
1,431,391 - Synpcc7942_1385 0.48 -1.8
1,431,391 - Synpcc7942_1385 0.48 -0.3
1,431,392 - Synpcc7942_1385 0.48 +1.4
1,431,418 - Synpcc7942_1385 0.60 +0.9
1,431,433 - Synpcc7942_1385 0.67 +0.6
1,431,445 + Synpcc7942_1385 0.72 +1.7
1,431,445 + -0.1
1,431,458 - Synpcc7942_1385 0.78 -1.1
1,431,461 + Synpcc7942_1385 0.79 +2.3
1,431,511 + -1.1
1,431,536 - +1.5
1,431,544 - +0.4
1,431,550 - -1.7
1,431,561 + -0.0
1,431,569 - +1.1
1,431,623 - +0.3
1,431,635 - +0.5

Or see this region's nucleotide sequence