Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1210 and Synpcc7942_1211 overlap by 1 nucleotides Synpcc7942_1211 and Synpcc7942_1212 are separated by 4 nucleotides Synpcc7942_1212 and Synpcc7942_1213 are separated by 379 nucleotides Synpcc7942_1213 and gpx1 are separated by 130 nucleotides gpx1 and Synpcc7942_1215 are separated by 25 nucleotides
Synpcc7942_1210: Synpcc7942_1210 - hypothetical protein, at 1,235,233 to 1,235,481
_1210
Synpcc7942_1211: Synpcc7942_1211 - probable molybdopterin-guanine dinucleotide biosynthesis protein A, at 1,235,481 to 1,235,825
_1211
Synpcc7942_1212: Synpcc7942_1212 - hypothetical protein, at 1,235,830 to 1,236,090
_1212
Synpcc7942_1213: Synpcc7942_1213 - virulence associated protein C, at 1,236,470 to 1,236,886
_1213
Synpcc7942_1214: gpx1 - Glutathione peroxidase, at 1,237,017 to 1,237,520
gpx1
Synpcc7942_1215: Synpcc7942_1215 - acyl-CoA dehydrogenase family protein-like, at 1,237,546 to 1,238,553
_1215
Position (kb) 1236
1237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1235.481 kb on + strand at 1235.517 kb on - strand, within Synpcc7942_1211 at 1235.827 kb on + strand at 1235.835 kb on - strand at 1235.858 kb on - strand, within Synpcc7942_1212 at 1235.885 kb on - strand, within Synpcc7942_1212 at 1235.900 kb on + strand, within Synpcc7942_1212 at 1235.910 kb on + strand, within Synpcc7942_1212 at 1235.932 kb on + strand, within Synpcc7942_1212 at 1235.939 kb on - strand, within Synpcc7942_1212 at 1235.945 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.946 kb on + strand, within Synpcc7942_1212 at 1235.953 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1235.954 kb on - strand, within Synpcc7942_1212 at 1236.023 kb on - strand, within Synpcc7942_1212 at 1236.023 kb on - strand, within Synpcc7942_1212 at 1236.023 kb on - strand, within Synpcc7942_1212 at 1236.070 kb on + strand at 1236.154 kb on + strand at 1236.186 kb on + strand at 1236.187 kb on - strand at 1236.194 kb on + strand at 1236.231 kb on + strand at 1236.238 kb on + strand at 1236.246 kb on - strand at 1236.287 kb on + strand at 1236.306 kb on + strand at 1236.322 kb on + strand at 1236.359 kb on + strand at 1236.369 kb on + strand at 1236.377 kb on - strand at 1236.390 kb on + strand at 1236.398 kb on - strand at 1236.408 kb on - strand at 1236.414 kb on + strand at 1236.429 kb on + strand at 1236.432 kb on - strand at 1236.432 kb on - strand at 1236.432 kb on - strand at 1236.432 kb on - strand at 1236.438 kb on + strand at 1236.438 kb on + strand at 1236.446 kb on - strand at 1236.472 kb on - strand at 1236.483 kb on + strand at 1236.561 kb on + strand, within Synpcc7942_1213 at 1236.569 kb on - strand, within Synpcc7942_1213 at 1236.579 kb on - strand, within Synpcc7942_1213 at 1236.579 kb on - strand, within Synpcc7942_1213 at 1236.585 kb on + strand, within Synpcc7942_1213 at 1236.593 kb on - strand, within Synpcc7942_1213 at 1236.593 kb on - strand, within Synpcc7942_1213 at 1236.595 kb on + strand, within Synpcc7942_1213 at 1236.603 kb on - strand, within Synpcc7942_1213 at 1236.603 kb on - strand, within Synpcc7942_1213 at 1236.603 kb on - strand, within Synpcc7942_1213 at 1236.611 kb on - strand, within Synpcc7942_1213 at 1236.614 kb on + strand, within Synpcc7942_1213 at 1236.632 kb on + strand, within Synpcc7942_1213 at 1236.641 kb on - strand, within Synpcc7942_1213 at 1236.641 kb on - strand, within Synpcc7942_1213 at 1236.683 kb on + strand, within Synpcc7942_1213 at 1236.707 kb on + strand, within Synpcc7942_1213 at 1236.839 kb on + strand, within Synpcc7942_1213 at 1236.840 kb on - strand, within Synpcc7942_1213 at 1236.847 kb on - strand at 1236.855 kb on + strand at 1236.865 kb on + strand at 1236.865 kb on + strand at 1236.870 kb on + strand at 1236.899 kb on + strand at 1236.943 kb on + strand at 1236.987 kb on - strand at 1236.987 kb on - strand at 1237.049 kb on + strand at 1237.052 kb on - strand at 1237.079 kb on - strand, within gpx1 at 1237.110 kb on + strand, within gpx1 at 1237.145 kb on - strand, within gpx1 at 1237.145 kb on - strand, within gpx1 at 1237.147 kb on - strand, within gpx1 at 1237.156 kb on - strand, within gpx1 at 1237.156 kb on - strand, within gpx1 at 1237.166 kb on - strand, within gpx1 at 1237.171 kb on - strand, within gpx1 at 1237.179 kb on - strand, within gpx1 at 1237.179 kb on - strand, within gpx1 at 1237.188 kb on + strand, within gpx1 at 1237.214 kb on + strand, within gpx1 at 1237.223 kb on - strand, within gpx1 at 1237.223 kb on - strand, within gpx1 at 1237.239 kb on - strand, within gpx1 at 1237.246 kb on - strand, within gpx1 at 1237.261 kb on + strand, within gpx1 at 1237.261 kb on + strand, within gpx1 at 1237.261 kb on + strand, within gpx1 at 1237.261 kb on + strand, within gpx1 at 1237.269 kb on - strand, within gpx1 at 1237.269 kb on - strand, within gpx1 at 1237.280 kb on - strand, within gpx1 at 1237.285 kb on + strand, within gpx1 at 1237.293 kb on - strand, within gpx1 at 1237.306 kb on + strand, within gpx1 at 1237.306 kb on + strand, within gpx1 at 1237.306 kb on + strand, within gpx1 at 1237.314 kb on - strand, within gpx1 at 1237.324 kb on - strand, within gpx1 at 1237.324 kb on - strand, within gpx1 at 1237.324 kb on - strand, within gpx1 at 1237.355 kb on + strand, within gpx1 at 1237.355 kb on + strand, within gpx1 at 1237.355 kb on + strand, within gpx1 at 1237.363 kb on - strand, within gpx1 at 1237.363 kb on - strand, within gpx1 at 1237.370 kb on + strand, within gpx1 at 1237.373 kb on - strand, within gpx1 at 1237.373 kb on - strand, within gpx1 at 1237.376 kb on + strand, within gpx1 at 1237.430 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.440 kb on + strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.448 kb on - strand, within gpx1 at 1237.449 kb on + strand, within gpx1 at 1237.467 kb on + strand, within gpx1 at 1237.475 kb on - strand at 1237.482 kb on + strand at 1237.490 kb on - strand at 1237.490 kb on - strand at 1237.515 kb on + strand at 1237.522 kb on + strand at 1237.522 kb on + strand at 1237.523 kb on - strand at 1237.543 kb on + strand at 1237.597 kb on - strand at 1237.602 kb on + strand at 1237.602 kb on + strand at 1237.602 kb on + strand at 1237.604 kb on - strand at 1237.610 kb on - strand at 1237.610 kb on - strand at 1237.610 kb on - strand at 1237.621 kb on + strand at 1237.649 kb on - strand, within Synpcc7942_1215 at 1237.651 kb on - strand, within Synpcc7942_1215 at 1237.690 kb on + strand, within Synpcc7942_1215 at 1237.708 kb on + strand, within Synpcc7942_1215 at 1237.716 kb on - strand, within Synpcc7942_1215 at 1237.717 kb on - strand, within Synpcc7942_1215 at 1237.717 kb on - strand, within Synpcc7942_1215 at 1237.738 kb on - strand, within Synpcc7942_1215 at 1237.748 kb on - strand, within Synpcc7942_1215 at 1237.807 kb on + strand, within Synpcc7942_1215 at 1237.810 kb on - strand, within Synpcc7942_1215 at 1237.823 kb on + strand, within Synpcc7942_1215 at 1237.823 kb on + strand, within Synpcc7942_1215 at 1237.825 kb on + strand, within Synpcc7942_1215 at 1237.826 kb on - strand, within Synpcc7942_1215 at 1237.838 kb on + strand, within Synpcc7942_1215 at 1237.840 kb on + strand, within Synpcc7942_1215 at 1237.843 kb on - strand, within Synpcc7942_1215 at 1237.848 kb on + strand, within Synpcc7942_1215 at 1237.852 kb on + strand, within Synpcc7942_1215 at 1237.868 kb on + strand, within Synpcc7942_1215 at 1237.868 kb on + strand, within Synpcc7942_1215 at 1237.868 kb on + strand, within Synpcc7942_1215 at 1237.871 kb on + strand, within Synpcc7942_1215 at 1237.880 kb on + strand, within Synpcc7942_1215
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 1,235,481 + +0.9 1,235,517 - Synpcc7942_1211 0.10 +0.8 1,235,827 + +0.4 1,235,835 - +0.4 1,235,858 - Synpcc7942_1212 0.11 +0.8 1,235,885 - Synpcc7942_1212 0.21 +0.1 1,235,900 + Synpcc7942_1212 0.27 +0.3 1,235,910 + Synpcc7942_1212 0.31 +2.8 1,235,932 + Synpcc7942_1212 0.39 +1.1 1,235,939 - Synpcc7942_1212 0.42 -2.4 1,235,945 + Synpcc7942_1212 0.44 +0.6 1,235,946 + Synpcc7942_1212 0.44 +0.3 1,235,946 + Synpcc7942_1212 0.44 +2.2 1,235,946 + Synpcc7942_1212 0.44 -0.1 1,235,946 + Synpcc7942_1212 0.44 -0.3 1,235,946 + Synpcc7942_1212 0.44 -2.4 1,235,946 + Synpcc7942_1212 0.44 +1.7 1,235,946 + Synpcc7942_1212 0.44 -0.1 1,235,946 + Synpcc7942_1212 0.44 +1.3 1,235,946 + Synpcc7942_1212 0.44 -0.4 1,235,946 + Synpcc7942_1212 0.44 -1.7 1,235,946 + Synpcc7942_1212 0.44 -3.1 1,235,953 - Synpcc7942_1212 0.47 -0.0 1,235,954 - Synpcc7942_1212 0.48 +0.7 1,235,954 - Synpcc7942_1212 0.48 +0.9 1,235,954 - Synpcc7942_1212 0.48 -1.7 1,235,954 - Synpcc7942_1212 0.48 -1.7 1,235,954 - Synpcc7942_1212 0.48 +1.0 1,235,954 - Synpcc7942_1212 0.48 +0.0 1,235,954 - Synpcc7942_1212 0.48 -0.1 1,235,954 - Synpcc7942_1212 0.48 -0.2 1,235,954 - Synpcc7942_1212 0.48 +0.2 1,235,954 - Synpcc7942_1212 0.48 -0.1 1,236,023 - Synpcc7942_1212 0.74 +1.5 1,236,023 - Synpcc7942_1212 0.74 -0.5 1,236,023 - Synpcc7942_1212 0.74 -0.3 1,236,070 + +1.7 1,236,154 + -0.1 1,236,186 + -0.6 1,236,187 - +1.3 1,236,194 + -2.7 1,236,231 + +0.9 1,236,238 + -0.9 1,236,246 - -0.9 1,236,287 + +0.8 1,236,306 + +1.0 1,236,322 + -0.6 1,236,359 + +2.3 1,236,369 + -1.7 1,236,377 - -2.1 1,236,390 + -0.3 1,236,398 - +0.9 1,236,408 - -0.5 1,236,414 + -1.7 1,236,429 + +2.0 1,236,432 - +1.1 1,236,432 - +0.3 1,236,432 - -0.7 1,236,432 - +2.2 1,236,438 + -1.5 1,236,438 + +1.9 1,236,446 - +0.6 1,236,472 - -0.3 1,236,483 + +0.4 1,236,561 + Synpcc7942_1213 0.22 +0.4 1,236,569 - Synpcc7942_1213 0.24 -0.2 1,236,579 - Synpcc7942_1213 0.26 +1.2 1,236,579 - Synpcc7942_1213 0.26 -1.7 1,236,585 + Synpcc7942_1213 0.28 +2.2 1,236,593 - Synpcc7942_1213 0.29 +0.9 1,236,593 - Synpcc7942_1213 0.29 +1.0 1,236,595 + Synpcc7942_1213 0.30 +0.9 1,236,603 - Synpcc7942_1213 0.32 +0.7 1,236,603 - Synpcc7942_1213 0.32 +0.4 1,236,603 - Synpcc7942_1213 0.32 +1.9 1,236,611 - Synpcc7942_1213 0.34 +2.7 1,236,614 + Synpcc7942_1213 0.35 -0.4 1,236,632 + Synpcc7942_1213 0.39 +1.4 1,236,641 - Synpcc7942_1213 0.41 +1.0 1,236,641 - Synpcc7942_1213 0.41 -0.9 1,236,683 + Synpcc7942_1213 0.51 +1.9 1,236,707 + Synpcc7942_1213 0.57 +0.6 1,236,839 + Synpcc7942_1213 0.88 +1.1 1,236,840 - Synpcc7942_1213 0.89 -0.1 1,236,847 - -0.3 1,236,855 + -0.1 1,236,865 + -1.4 1,236,865 + +0.2 1,236,870 + +0.6 1,236,899 + -1.3 1,236,943 + -1.3 1,236,987 - -1.1 1,236,987 - +1.6 1,237,049 + +0.0 1,237,052 - +0.0 1,237,079 - gpx1 Synpcc7942_1214 0.12 +1.0 1,237,110 + gpx1 Synpcc7942_1214 0.18 -2.0 1,237,145 - gpx1 Synpcc7942_1214 0.25 -1.0 1,237,145 - gpx1 Synpcc7942_1214 0.25 +2.1 1,237,147 - gpx1 Synpcc7942_1214 0.26 +0.3 1,237,156 - gpx1 Synpcc7942_1214 0.28 -1.7 1,237,156 - gpx1 Synpcc7942_1214 0.28 +0.5 1,237,166 - gpx1 Synpcc7942_1214 0.30 -1.7 1,237,171 - gpx1 Synpcc7942_1214 0.31 +0.5 1,237,179 - gpx1 Synpcc7942_1214 0.32 +0.1 1,237,179 - gpx1 Synpcc7942_1214 0.32 +0.6 1,237,188 + gpx1 Synpcc7942_1214 0.34 -0.7 1,237,214 + gpx1 Synpcc7942_1214 0.39 +0.1 1,237,223 - gpx1 Synpcc7942_1214 0.41 +2.6 1,237,223 - gpx1 Synpcc7942_1214 0.41 -1.1 1,237,239 - gpx1 Synpcc7942_1214 0.44 +0.7 1,237,246 - gpx1 Synpcc7942_1214 0.45 +2.0 1,237,261 + gpx1 Synpcc7942_1214 0.48 -1.3 1,237,261 + gpx1 Synpcc7942_1214 0.48 -0.1 1,237,261 + gpx1 Synpcc7942_1214 0.48 -0.1 1,237,261 + gpx1 Synpcc7942_1214 0.48 +1.8 1,237,269 - gpx1 Synpcc7942_1214 0.50 +0.6 1,237,269 - gpx1 Synpcc7942_1214 0.50 +1.9 1,237,280 - gpx1 Synpcc7942_1214 0.52 -1.1 1,237,285 + gpx1 Synpcc7942_1214 0.53 -1.0 1,237,293 - gpx1 Synpcc7942_1214 0.55 +0.2 1,237,306 + gpx1 Synpcc7942_1214 0.57 +0.6 1,237,306 + gpx1 Synpcc7942_1214 0.57 -0.7 1,237,306 + gpx1 Synpcc7942_1214 0.57 +0.1 1,237,314 - gpx1 Synpcc7942_1214 0.59 -1.1 1,237,324 - gpx1 Synpcc7942_1214 0.61 -1.1 1,237,324 - gpx1 Synpcc7942_1214 0.61 -3.3 1,237,324 - gpx1 Synpcc7942_1214 0.61 +1.5 1,237,355 + gpx1 Synpcc7942_1214 0.67 -1.0 1,237,355 + gpx1 Synpcc7942_1214 0.67 +0.6 1,237,355 + gpx1 Synpcc7942_1214 0.67 -1.7 1,237,363 - gpx1 Synpcc7942_1214 0.69 -1.2 1,237,363 - gpx1 Synpcc7942_1214 0.69 -2.7 1,237,370 + gpx1 Synpcc7942_1214 0.70 +1.6 1,237,373 - gpx1 Synpcc7942_1214 0.71 +1.1 1,237,373 - gpx1 Synpcc7942_1214 0.71 +2.5 1,237,376 + gpx1 Synpcc7942_1214 0.71 +0.4 1,237,430 + gpx1 Synpcc7942_1214 0.82 +0.6 1,237,440 + gpx1 Synpcc7942_1214 0.84 +2.1 1,237,440 + gpx1 Synpcc7942_1214 0.84 -0.1 1,237,440 + gpx1 Synpcc7942_1214 0.84 -0.4 1,237,440 + gpx1 Synpcc7942_1214 0.84 -2.9 1,237,440 + gpx1 Synpcc7942_1214 0.84 +2.5 1,237,440 + gpx1 Synpcc7942_1214 0.84 +3.6 1,237,440 + gpx1 Synpcc7942_1214 0.84 +3.3 1,237,440 + gpx1 Synpcc7942_1214 0.84 -0.8 1,237,440 + gpx1 Synpcc7942_1214 0.84 +2.3 1,237,440 + gpx1 Synpcc7942_1214 0.84 -0.7 1,237,440 + gpx1 Synpcc7942_1214 0.84 +0.5 1,237,440 + gpx1 Synpcc7942_1214 0.84 +0.5 1,237,440 + gpx1 Synpcc7942_1214 0.84 -2.1 1,237,448 - gpx1 Synpcc7942_1214 0.86 +1.1 1,237,448 - gpx1 Synpcc7942_1214 0.86 +1.5 1,237,448 - gpx1 Synpcc7942_1214 0.86 -1.1 1,237,448 - gpx1 Synpcc7942_1214 0.86 +0.5 1,237,448 - gpx1 Synpcc7942_1214 0.86 -1.1 1,237,448 - gpx1 Synpcc7942_1214 0.86 +0.1 1,237,448 - gpx1 Synpcc7942_1214 0.86 -1.4 1,237,448 - gpx1 Synpcc7942_1214 0.86 +3.2 1,237,448 - gpx1 Synpcc7942_1214 0.86 +3.1 1,237,448 - gpx1 Synpcc7942_1214 0.86 +1.4 1,237,448 - gpx1 Synpcc7942_1214 0.86 +1.7 1,237,449 + gpx1 Synpcc7942_1214 0.86 +0.7 1,237,467 + gpx1 Synpcc7942_1214 0.89 +3.1 1,237,475 - +2.1 1,237,482 + -0.6 1,237,490 - -0.4 1,237,490 - -0.5 1,237,515 + +1.2 1,237,522 + -1.1 1,237,522 + -0.1 1,237,523 - -2.1 1,237,543 + +0.4 1,237,597 - +0.2 1,237,602 + +0.5 1,237,602 + +0.5 1,237,602 + -0.0 1,237,604 - +1.4 1,237,610 - +2.0 1,237,610 - +1.0 1,237,610 - -2.4 1,237,621 + -0.1 1,237,649 - Synpcc7942_1215 0.10 +1.3 1,237,651 - Synpcc7942_1215 0.10 -1.1 1,237,690 + Synpcc7942_1215 0.14 -0.1 1,237,708 + Synpcc7942_1215 0.16 +1.1 1,237,716 - Synpcc7942_1215 0.17 +0.3 1,237,717 - Synpcc7942_1215 0.17 +1.1 1,237,717 - Synpcc7942_1215 0.17 +1.3 1,237,738 - Synpcc7942_1215 0.19 +0.9 1,237,748 - Synpcc7942_1215 0.20 -1.4 1,237,807 + Synpcc7942_1215 0.26 +0.5 1,237,810 - Synpcc7942_1215 0.26 -1.1 1,237,823 + Synpcc7942_1215 0.27 -1.1 1,237,823 + Synpcc7942_1215 0.27 +1.0 1,237,825 + Synpcc7942_1215 0.28 +1.7 1,237,826 - Synpcc7942_1215 0.28 -0.2 1,237,838 + Synpcc7942_1215 0.29 +1.0 1,237,840 + Synpcc7942_1215 0.29 -0.1 1,237,843 - Synpcc7942_1215 0.29 -2.1 1,237,848 + Synpcc7942_1215 0.30 +0.5 1,237,852 + Synpcc7942_1215 0.30 +0.1 1,237,868 + Synpcc7942_1215 0.32 -0.5 1,237,868 + Synpcc7942_1215 0.32 +1.9 1,237,868 + Synpcc7942_1215 0.32 +0.1 1,237,871 + Synpcc7942_1215 0.32 -1.6 1,237,880 + Synpcc7942_1215 0.33 +2.2
Or see this region's nucleotide sequence