Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0906 and Synpcc7942_0907 are separated by 206 nucleotides Synpcc7942_0907 and Synpcc7942_0908 are separated by 113 nucleotides Synpcc7942_0908 and ycf57 are separated by 147 nucleotides ycf57 and Synpcc7942_0910 are separated by 68 nucleotides
Synpcc7942_0906: Synpcc7942_0906 - hypothetical protein, at 916,262 to 916,747
_0906
Synpcc7942_0907: Synpcc7942_0907 - hypothetical protein, at 916,954 to 917,166
_0907
Synpcc7942_0908: Synpcc7942_0908 - hypothetical protein, at 917,280 to 917,987
_0908
Synpcc7942_0909: ycf57 - HesB/YadR/YfhF, at 918,135 to 918,491
ycf57
Synpcc7942_0910: Synpcc7942_0910 - hypothetical protein, at 918,560 to 918,988
_0910
Position (kb) 917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 916.387 kb on + strand, within Synpcc7942_0906 at 916.603 kb on + strand, within Synpcc7942_0906 at 916.739 kb on - strand at 916.750 kb on - strand at 916.755 kb on + strand at 916.842 kb on + strand at 916.889 kb on + strand at 916.928 kb on + strand at 916.994 kb on + strand, within Synpcc7942_0907 at 917.002 kb on - strand, within Synpcc7942_0907 at 917.002 kb on - strand, within Synpcc7942_0907 at 917.002 kb on - strand, within Synpcc7942_0907 at 917.002 kb on - strand, within Synpcc7942_0907 at 917.004 kb on - strand, within Synpcc7942_0907 at 917.060 kb on + strand, within Synpcc7942_0907 at 917.060 kb on + strand, within Synpcc7942_0907 at 917.060 kb on + strand, within Synpcc7942_0907 at 917.076 kb on + strand, within Synpcc7942_0907 at 917.109 kb on + strand, within Synpcc7942_0907 at 917.122 kb on - strand, within Synpcc7942_0907 at 917.124 kb on + strand, within Synpcc7942_0907 at 917.202 kb on - strand at 917.204 kb on + strand at 917.204 kb on + strand at 917.204 kb on + strand at 917.212 kb on - strand at 917.212 kb on - strand at 917.213 kb on + strand at 917.213 kb on + strand at 917.213 kb on + strand at 917.221 kb on - strand at 917.221 kb on - strand at 917.231 kb on + strand at 917.246 kb on + strand at 917.246 kb on + strand at 917.246 kb on + strand at 917.253 kb on - strand at 917.254 kb on - strand at 917.254 kb on - strand at 917.254 kb on - strand at 917.257 kb on + strand at 917.257 kb on + strand at 917.265 kb on - strand at 917.265 kb on - strand at 917.265 kb on - strand at 917.278 kb on + strand at 917.285 kb on + strand at 917.286 kb on - strand at 917.286 kb on - strand at 917.286 kb on - strand at 917.353 kb on - strand, within Synpcc7942_0908 at 917.367 kb on + strand, within Synpcc7942_0908 at 917.399 kb on - strand, within Synpcc7942_0908 at 917.399 kb on - strand, within Synpcc7942_0908 at 917.405 kb on + strand, within Synpcc7942_0908 at 917.412 kb on - strand, within Synpcc7942_0908 at 917.413 kb on - strand, within Synpcc7942_0908 at 917.492 kb on + strand, within Synpcc7942_0908 at 917.500 kb on - strand, within Synpcc7942_0908 at 917.505 kb on + strand, within Synpcc7942_0908 at 917.513 kb on + strand, within Synpcc7942_0908 at 917.529 kb on + strand, within Synpcc7942_0908 at 917.557 kb on + strand, within Synpcc7942_0908 at 917.587 kb on - strand, within Synpcc7942_0908 at 917.616 kb on - strand, within Synpcc7942_0908 at 917.628 kb on + strand, within Synpcc7942_0908 at 917.702 kb on - strand, within Synpcc7942_0908 at 917.727 kb on + strand, within Synpcc7942_0908 at 917.786 kb on - strand, within Synpcc7942_0908 at 917.798 kb on - strand, within Synpcc7942_0908 at 917.828 kb on + strand, within Synpcc7942_0908 at 917.828 kb on + strand, within Synpcc7942_0908 at 917.841 kb on + strand, within Synpcc7942_0908 at 917.849 kb on - strand, within Synpcc7942_0908 at 917.876 kb on + strand, within Synpcc7942_0908 at 917.884 kb on - strand, within Synpcc7942_0908 at 917.899 kb on + strand, within Synpcc7942_0908 at 917.899 kb on - strand, within Synpcc7942_0908 at 917.910 kb on - strand, within Synpcc7942_0908 at 917.917 kb on - strand at 917.929 kb on - strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.995 kb on + strand at 917.996 kb on - strand at 917.996 kb on - strand at 917.996 kb on - strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on - strand at 918.011 kb on - strand at 918.011 kb on - strand at 918.011 kb on - strand at 918.016 kb on - strand at 918.023 kb on - strand at 918.029 kb on - strand at 918.048 kb on + strand at 918.058 kb on - strand at 918.074 kb on - strand at 918.112 kb on - strand at 918.124 kb on + strand at 918.132 kb on - strand at 918.205 kb on - strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.278 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.298 kb on + strand at 918.306 kb on - strand, within ycf57 at 918.306 kb on - strand, within ycf57 at 918.335 kb on - strand, within ycf57 at 918.361 kb on - strand, within ycf57 at 918.424 kb on - strand, within ycf57 at 918.437 kb on + strand, within ycf57 at 918.443 kb on + strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.453 kb on + strand, within ycf57 at 918.461 kb on - strand at 918.476 kb on + strand at 918.516 kb on + strand at 918.521 kb on + strand at 918.521 kb on + strand at 918.524 kb on - strand at 918.589 kb on + strand at 918.618 kb on - strand, within Synpcc7942_0910 at 918.668 kb on + strand, within Synpcc7942_0910 at 918.676 kb on - strand, within Synpcc7942_0910 at 918.679 kb on + strand, within Synpcc7942_0910 at 918.688 kb on + strand, within Synpcc7942_0910 at 918.689 kb on + strand, within Synpcc7942_0910 at 918.742 kb on + strand, within Synpcc7942_0910 at 918.769 kb on + strand, within Synpcc7942_0910 at 918.781 kb on + strand, within Synpcc7942_0910 at 918.782 kb on - strand, within Synpcc7942_0910 at 918.796 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.847 kb on + strand, within Synpcc7942_0910 at 918.863 kb on - strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.894 kb on + strand, within Synpcc7942_0910 at 918.902 kb on - strand, within Synpcc7942_0910 at 918.902 kb on - strand, within Synpcc7942_0910 at 918.923 kb on + strand, within Synpcc7942_0910 at 918.931 kb on + strand, within Synpcc7942_0910 at 918.931 kb on - strand, within Synpcc7942_0910 at 918.951 kb on + strand at 918.953 kb on - strand at 918.958 kb on - strand at 918.967 kb on + strand at 918.975 kb on - strand at 918.983 kb on + strand at 918.983 kb on + strand at 918.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 916,387 + Synpcc7942_0906 0.26 -0.1 916,603 + Synpcc7942_0906 0.70 +1.8 916,739 - -1.3 916,750 - +0.5 916,755 + +3.0 916,842 + -1.1 916,889 + -1.4 916,928 + +1.1 916,994 + Synpcc7942_0907 0.19 -1.7 917,002 - Synpcc7942_0907 0.23 -1.1 917,002 - Synpcc7942_0907 0.23 -1.5 917,002 - Synpcc7942_0907 0.23 +1.1 917,002 - Synpcc7942_0907 0.23 -0.7 917,004 - Synpcc7942_0907 0.23 -0.6 917,060 + Synpcc7942_0907 0.50 +0.7 917,060 + Synpcc7942_0907 0.50 -0.1 917,060 + Synpcc7942_0907 0.50 +0.5 917,076 + Synpcc7942_0907 0.57 +2.1 917,109 + Synpcc7942_0907 0.73 -0.2 917,122 - Synpcc7942_0907 0.79 -0.9 917,124 + Synpcc7942_0907 0.80 +1.2 917,202 - -1.5 917,204 + +0.6 917,204 + -0.3 917,204 + -0.5 917,212 - -1.7 917,212 - +0.5 917,213 + +0.8 917,213 + +1.9 917,213 + +1.1 917,221 - +0.5 917,221 - -0.2 917,231 + -1.7 917,246 + +1.8 917,246 + +1.2 917,246 + +2.0 917,253 - +1.6 917,254 - -0.1 917,254 - +2.0 917,254 - +3.2 917,257 + +1.2 917,257 + +2.6 917,265 - +2.5 917,265 - +0.9 917,265 - +1.8 917,278 + +1.0 917,285 + +1.0 917,286 - -0.1 917,286 - +2.9 917,286 - +1.5 917,353 - Synpcc7942_0908 0.10 +0.6 917,367 + Synpcc7942_0908 0.12 +1.5 917,399 - Synpcc7942_0908 0.17 +1.7 917,399 - Synpcc7942_0908 0.17 -0.1 917,405 + Synpcc7942_0908 0.18 +1.8 917,412 - Synpcc7942_0908 0.19 +2.0 917,413 - Synpcc7942_0908 0.19 +1.7 917,492 + Synpcc7942_0908 0.30 +1.2 917,500 - Synpcc7942_0908 0.31 -2.4 917,505 + Synpcc7942_0908 0.32 +0.8 917,513 + Synpcc7942_0908 0.33 +1.9 917,529 + Synpcc7942_0908 0.35 +0.4 917,557 + Synpcc7942_0908 0.39 +0.9 917,587 - Synpcc7942_0908 0.43 +1.3 917,616 - Synpcc7942_0908 0.47 +0.1 917,628 + Synpcc7942_0908 0.49 +1.7 917,702 - Synpcc7942_0908 0.60 +0.8 917,727 + Synpcc7942_0908 0.63 -0.7 917,786 - Synpcc7942_0908 0.71 +1.9 917,798 - Synpcc7942_0908 0.73 +1.9 917,828 + Synpcc7942_0908 0.77 +0.5 917,828 + Synpcc7942_0908 0.77 +1.1 917,841 + Synpcc7942_0908 0.79 +0.5 917,849 - Synpcc7942_0908 0.80 +2.6 917,876 + Synpcc7942_0908 0.84 +0.3 917,884 - Synpcc7942_0908 0.85 +3.3 917,899 + Synpcc7942_0908 0.87 +0.6 917,899 - Synpcc7942_0908 0.87 +1.0 917,910 - Synpcc7942_0908 0.89 +1.5 917,917 - +1.5 917,929 - +1.5 917,988 + +1.4 917,988 + +2.5 917,988 + -0.4 917,988 + -3.7 917,995 + +0.2 917,996 - +1.1 917,996 - +1.5 917,996 - +1.4 918,003 + +1.5 918,003 + +1.8 918,003 + +0.6 918,003 + +0.7 918,003 - -1.1 918,011 - +0.1 918,011 - -0.5 918,011 - -0.7 918,016 - +2.6 918,023 - -2.1 918,029 - +1.8 918,048 + +1.2 918,058 - +0.2 918,074 - +1.0 918,112 - +1.3 918,124 + +1.4 918,132 - -2.1 918,205 - ycf57 Synpcc7942_0909 0.20 +0.5 918,275 + ycf57 Synpcc7942_0909 0.39 -0.3 918,275 + ycf57 Synpcc7942_0909 0.39 -3.4 918,275 + ycf57 Synpcc7942_0909 0.39 +2.2 918,275 + ycf57 Synpcc7942_0909 0.39 +1.7 918,275 + ycf57 Synpcc7942_0909 0.39 +0.3 918,275 + ycf57 Synpcc7942_0909 0.39 +1.3 918,275 + ycf57 Synpcc7942_0909 0.39 -1.7 918,275 + ycf57 Synpcc7942_0909 0.39 -1.7 918,275 + ycf57 Synpcc7942_0909 0.39 -0.1 918,278 - ycf57 Synpcc7942_0909 0.40 +2.2 918,283 - ycf57 Synpcc7942_0909 0.41 +1.0 918,283 - ycf57 Synpcc7942_0909 0.41 +2.2 918,283 - ycf57 Synpcc7942_0909 0.41 +1.5 918,283 - ycf57 Synpcc7942_0909 0.41 -0.7 918,283 - ycf57 Synpcc7942_0909 0.41 +1.8 918,283 - ycf57 Synpcc7942_0909 0.41 +0.9 918,283 - ycf57 Synpcc7942_0909 0.41 +0.2 918,283 - ycf57 Synpcc7942_0909 0.41 +0.9 918,298 + -0.1 918,306 - ycf57 Synpcc7942_0909 0.48 -2.1 918,306 - ycf57 Synpcc7942_0909 0.48 +2.2 918,335 - ycf57 Synpcc7942_0909 0.56 -0.5 918,361 - ycf57 Synpcc7942_0909 0.63 +1.3 918,424 - ycf57 Synpcc7942_0909 0.81 -1.1 918,437 + ycf57 Synpcc7942_0909 0.85 +1.9 918,443 + ycf57 Synpcc7942_0909 0.86 +0.0 918,451 - ycf57 Synpcc7942_0909 0.89 +1.5 918,451 - ycf57 Synpcc7942_0909 0.89 +0.7 918,451 - ycf57 Synpcc7942_0909 0.89 +1.8 918,451 - ycf57 Synpcc7942_0909 0.89 +0.9 918,453 + ycf57 Synpcc7942_0909 0.89 -0.4 918,461 - +0.7 918,476 + +1.8 918,516 + -0.5 918,521 + +0.5 918,521 + -3.1 918,524 - -0.5 918,589 + -2.1 918,618 - Synpcc7942_0910 0.14 +1.1 918,668 + Synpcc7942_0910 0.25 -1.1 918,676 - Synpcc7942_0910 0.27 +1.1 918,679 + Synpcc7942_0910 0.28 +0.9 918,688 + Synpcc7942_0910 0.30 +1.0 918,689 + Synpcc7942_0910 0.30 -0.8 918,742 + Synpcc7942_0910 0.42 +4.4 918,769 + Synpcc7942_0910 0.49 +1.0 918,781 + Synpcc7942_0910 0.52 +0.2 918,782 - Synpcc7942_0910 0.52 +0.4 918,796 + Synpcc7942_0910 0.55 +0.5 918,829 + Synpcc7942_0910 0.63 -1.1 918,829 + Synpcc7942_0910 0.63 -0.1 918,829 + Synpcc7942_0910 0.63 +0.0 918,829 + Synpcc7942_0910 0.63 -0.6 918,829 + Synpcc7942_0910 0.63 +1.5 918,837 - Synpcc7942_0910 0.65 +1.1 918,837 - Synpcc7942_0910 0.65 -2.9 918,837 - Synpcc7942_0910 0.65 +0.9 918,847 + Synpcc7942_0910 0.67 +1.3 918,863 - Synpcc7942_0910 0.71 -0.1 918,882 + Synpcc7942_0910 0.75 +1.3 918,882 + Synpcc7942_0910 0.75 -0.7 918,882 + +1.5 918,882 + Synpcc7942_0910 0.75 +1.2 918,882 + Synpcc7942_0910 0.75 -0.7 918,894 + Synpcc7942_0910 0.78 -2.1 918,902 - Synpcc7942_0910 0.80 -1.3 918,902 - Synpcc7942_0910 0.80 +1.3 918,923 + Synpcc7942_0910 0.85 +0.8 918,931 + Synpcc7942_0910 0.86 +2.4 918,931 - Synpcc7942_0910 0.86 -1.1 918,951 + +0.4 918,953 - +1.6 918,958 - +1.4 918,967 + -0.4 918,975 - +1.8 918,983 + +1.3 918,983 + -2.9 918,983 + +0.4
Or see this region's nucleotide sequence