Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glsF and Synpcc7942_0891 are separated by 377 nucleotides Synpcc7942_0891 and cofG are separated by 73 nucleotides
Synpcc7942_0890: glsF - glutamate synthase (ferredoxin), at 896,748 to 901,358
glsF
Synpcc7942_0891: Synpcc7942_0891 - hypothetical protein, at 901,736 to 902,035
_0891
Synpcc7942_0892: cofG - FO synthase subunit 1, at 902,109 to 903,119
cofG
Position (kb) 901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 901.309 kb on + strand at 901.329 kb on - strand at 901.329 kb on - strand at 901.353 kb on + strand at 901.353 kb on + strand at 901.361 kb on - strand at 901.387 kb on - strand at 901.410 kb on + strand at 901.433 kb on + strand at 901.441 kb on - strand at 901.443 kb on + strand at 901.467 kb on + strand at 901.492 kb on + strand at 901.642 kb on - strand at 901.651 kb on - strand at 901.671 kb on - strand at 901.687 kb on + strand at 901.776 kb on + strand, within Synpcc7942_0891 at 901.776 kb on + strand, within Synpcc7942_0891 at 901.776 kb on + strand, within Synpcc7942_0891 at 901.781 kb on + strand, within Synpcc7942_0891 at 901.786 kb on + strand, within Synpcc7942_0891 at 901.907 kb on - strand, within Synpcc7942_0891 at 901.973 kb on + strand, within Synpcc7942_0891 at 901.991 kb on + strand, within Synpcc7942_0891 at 901.991 kb on + strand, within Synpcc7942_0891 at 901.999 kb on - strand, within Synpcc7942_0891 at 902.015 kb on - strand at 902.024 kb on - strand at 902.037 kb on - strand at 902.037 kb on - strand at 902.064 kb on + strand at 902.078 kb on + strand at 902.116 kb on + strand at 902.116 kb on + strand at 902.124 kb on - strand at 902.137 kb on - strand at 902.144 kb on + strand at 902.182 kb on - strand at 902.192 kb on + strand at 902.200 kb on - strand at 902.223 kb on + strand, within cofG at 902.229 kb on + strand, within cofG at 902.248 kb on + strand, within cofG at 902.298 kb on + strand, within cofG at 902.303 kb on + strand, within cofG at 902.311 kb on - strand, within cofG at 902.311 kb on - strand, within cofG at 902.333 kb on + strand, within cofG at 902.341 kb on - strand, within cofG at 902.343 kb on - strand, within cofG at 902.380 kb on - strand, within cofG at 902.403 kb on + strand, within cofG at 902.411 kb on - strand, within cofG at 902.463 kb on + strand, within cofG at 902.463 kb on + strand, within cofG at 902.473 kb on - strand, within cofG at 902.502 kb on + strand, within cofG at 902.550 kb on - strand, within cofG at 902.561 kb on + strand, within cofG at 902.589 kb on - strand, within cofG at 902.592 kb on + strand, within cofG at 902.611 kb on - strand, within cofG at 902.618 kb on - strand, within cofG at 902.629 kb on + strand, within cofG at 902.629 kb on + strand, within cofG at 902.639 kb on + strand, within cofG at 902.639 kb on + strand, within cofG at 902.647 kb on - strand, within cofG at 902.647 kb on - strand, within cofG at 902.647 kb on - strand, within cofG at 902.676 kb on - strand, within cofG at 902.679 kb on - strand, within cofG at 902.686 kb on - strand, within cofG at 902.688 kb on + strand, within cofG at 902.715 kb on + strand, within cofG at 902.734 kb on + strand, within cofG at 902.739 kb on - strand, within cofG at 902.750 kb on - strand, within cofG at 902.776 kb on - strand, within cofG at 902.778 kb on + strand, within cofG at 902.778 kb on + strand, within cofG at 902.786 kb on - strand, within cofG at 902.786 kb on - strand, within cofG at 902.791 kb on + strand at 902.791 kb on + strand, within cofG at 902.799 kb on - strand, within cofG at 902.817 kb on + strand, within cofG at 902.825 kb on - strand, within cofG at 902.825 kb on - strand, within cofG at 902.861 kb on - strand, within cofG at 902.933 kb on - strand, within cofG at 902.964 kb on + strand, within cofG at 902.965 kb on - strand, within cofG at 902.972 kb on - strand, within cofG at 903.010 kb on + strand, within cofG at 903.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 901,309 + +0.9 901,329 - -0.1 901,329 - +0.1 901,353 + +0.9 901,353 + +0.8 901,361 - +1.3 901,387 - -0.6 901,410 + -3.3 901,433 + -3.3 901,441 - +1.2 901,443 + +0.6 901,467 + +0.6 901,492 + -1.1 901,642 - +1.3 901,651 - +3.0 901,671 - -0.5 901,687 + +0.9 901,776 + Synpcc7942_0891 0.13 +1.2 901,776 + Synpcc7942_0891 0.13 +2.3 901,776 + Synpcc7942_0891 0.13 +0.5 901,781 + Synpcc7942_0891 0.15 -2.1 901,786 + Synpcc7942_0891 0.17 +0.3 901,907 - Synpcc7942_0891 0.57 -1.5 901,973 + Synpcc7942_0891 0.79 +0.8 901,991 + Synpcc7942_0891 0.85 +0.9 901,991 + Synpcc7942_0891 0.85 -0.1 901,999 - Synpcc7942_0891 0.88 +0.6 902,015 - -3.6 902,024 - -2.1 902,037 - -2.1 902,037 - +0.1 902,064 + +1.9 902,078 + -1.7 902,116 + +0.6 902,116 + +1.2 902,124 - -0.1 902,137 - -0.1 902,144 + -1.7 902,182 - +0.2 902,192 + +1.4 902,200 - -0.7 902,223 + cofG Synpcc7942_0892 0.11 -0.6 902,229 + cofG Synpcc7942_0892 0.12 +0.2 902,248 + cofG Synpcc7942_0892 0.14 +0.7 902,298 + cofG Synpcc7942_0892 0.19 -0.1 902,303 + cofG Synpcc7942_0892 0.19 +1.9 902,311 - cofG Synpcc7942_0892 0.20 -0.1 902,311 - cofG Synpcc7942_0892 0.20 -2.7 902,333 + cofG Synpcc7942_0892 0.22 -2.9 902,341 - cofG Synpcc7942_0892 0.23 +0.4 902,343 - cofG Synpcc7942_0892 0.23 +1.0 902,380 - cofG Synpcc7942_0892 0.27 -1.7 902,403 + cofG Synpcc7942_0892 0.29 -3.1 902,411 - cofG Synpcc7942_0892 0.30 +0.9 902,463 + cofG Synpcc7942_0892 0.35 -2.5 902,463 + cofG Synpcc7942_0892 0.35 -2.5 902,473 - cofG Synpcc7942_0892 0.36 -0.1 902,502 + cofG Synpcc7942_0892 0.39 -1.7 902,550 - cofG Synpcc7942_0892 0.44 +1.6 902,561 + cofG Synpcc7942_0892 0.45 +0.7 902,589 - cofG Synpcc7942_0892 0.47 +0.3 902,592 + cofG Synpcc7942_0892 0.48 +1.4 902,611 - cofG Synpcc7942_0892 0.50 -1.1 902,618 - cofG Synpcc7942_0892 0.50 +0.6 902,629 + cofG Synpcc7942_0892 0.51 +0.2 902,629 + cofG Synpcc7942_0892 0.51 +0.9 902,639 + cofG Synpcc7942_0892 0.52 +0.4 902,639 + cofG Synpcc7942_0892 0.52 +0.2 902,647 - cofG Synpcc7942_0892 0.53 -3.1 902,647 - cofG Synpcc7942_0892 0.53 -0.4 902,647 - cofG Synpcc7942_0892 0.53 +0.9 902,676 - cofG Synpcc7942_0892 0.56 +0.9 902,679 - cofG Synpcc7942_0892 0.56 +1.0 902,686 - cofG Synpcc7942_0892 0.57 +0.6 902,688 + cofG Synpcc7942_0892 0.57 -2.0 902,715 + cofG Synpcc7942_0892 0.60 +2.7 902,734 + cofG Synpcc7942_0892 0.62 +1.2 902,739 - cofG Synpcc7942_0892 0.62 +1.2 902,750 - cofG Synpcc7942_0892 0.63 -1.9 902,776 - cofG Synpcc7942_0892 0.66 -0.7 902,778 + cofG Synpcc7942_0892 0.66 +2.3 902,778 + cofG Synpcc7942_0892 0.66 -2.5 902,786 - cofG Synpcc7942_0892 0.67 -0.2 902,786 - cofG Synpcc7942_0892 0.67 +2.1 902,791 + -0.1 902,791 + cofG Synpcc7942_0892 0.67 +0.6 902,799 - cofG Synpcc7942_0892 0.68 +3.3 902,817 + cofG Synpcc7942_0892 0.70 +0.3 902,825 - cofG Synpcc7942_0892 0.71 +0.7 902,825 - cofG Synpcc7942_0892 0.71 -1.4 902,861 - cofG Synpcc7942_0892 0.74 +0.5 902,933 - cofG Synpcc7942_0892 0.82 -2.1 902,964 + cofG Synpcc7942_0892 0.85 +0.3 902,965 - cofG Synpcc7942_0892 0.85 +0.4 902,972 - cofG Synpcc7942_0892 0.85 -0.6 903,010 + cofG Synpcc7942_0892 0.89 +3.2 903,035 - +0.6
Or see this region's nucleotide sequence