Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0865 and Synpcc7942_0866 are separated by 62 nucleotides Synpcc7942_0866 and Synpcc7942_0867 are separated by 47 nucleotides Synpcc7942_0867 and Synpcc7942_0868 are separated by 0 nucleotides
Synpcc7942_0865: Synpcc7942_0865 - nucleotide-binding protein, at 867,986 to 868,477
_0865
Synpcc7942_0866: Synpcc7942_0866 - hypothetical protein, at 868,540 to 869,121
_0866
Synpcc7942_0867: Synpcc7942_0867 - hypothetical protein, at 869,169 to 869,504
_0867
Synpcc7942_0868: Synpcc7942_0868 - hypothetical protein, at 869,505 to 871,253
_0868
Position (kb) 869
870 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 868.209 kb on - strand, within Synpcc7942_0865 at 868.270 kb on + strand, within Synpcc7942_0865 at 868.275 kb on + strand, within Synpcc7942_0865 at 868.289 kb on + strand, within Synpcc7942_0865 at 868.290 kb on - strand, within Synpcc7942_0865 at 868.294 kb on + strand, within Synpcc7942_0865 at 868.297 kb on - strand, within Synpcc7942_0865 at 868.314 kb on - strand, within Synpcc7942_0865 at 868.325 kb on - strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.347 kb on - strand, within Synpcc7942_0865 at 868.347 kb on - strand, within Synpcc7942_0865 at 868.347 kb on - strand, within Synpcc7942_0865 at 868.347 kb on - strand, within Synpcc7942_0865 at 868.381 kb on + strand, within Synpcc7942_0865 at 868.386 kb on + strand, within Synpcc7942_0865 at 868.386 kb on + strand, within Synpcc7942_0865 at 868.386 kb on + strand, within Synpcc7942_0865 at 868.393 kb on + strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.398 kb on + strand at 868.401 kb on - strand, within Synpcc7942_0865 at 868.405 kb on - strand, within Synpcc7942_0865 at 868.433 kb on + strand at 868.451 kb on + strand at 868.492 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.509 kb on - strand at 868.509 kb on - strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.514 kb on - strand at 868.520 kb on - strand at 868.520 kb on - strand at 868.522 kb on + strand at 868.522 kb on + strand at 868.522 kb on + strand at 868.530 kb on - strand at 868.530 kb on - strand at 868.530 kb on - strand at 868.530 kb on - strand at 868.530 kb on - strand at 868.595 kb on - strand at 868.617 kb on - strand, within Synpcc7942_0866 at 868.617 kb on - strand, within Synpcc7942_0866 at 868.617 kb on - strand at 868.677 kb on - strand, within Synpcc7942_0866 at 868.677 kb on - strand, within Synpcc7942_0866 at 868.738 kb on + strand, within Synpcc7942_0866 at 868.744 kb on + strand, within Synpcc7942_0866 at 868.749 kb on - strand, within Synpcc7942_0866 at 868.754 kb on - strand, within Synpcc7942_0866 at 868.754 kb on - strand, within Synpcc7942_0866 at 868.773 kb on - strand, within Synpcc7942_0866 at 868.854 kb on + strand, within Synpcc7942_0866 at 868.874 kb on + strand, within Synpcc7942_0866 at 868.879 kb on + strand, within Synpcc7942_0866 at 868.884 kb on + strand, within Synpcc7942_0866 at 868.884 kb on + strand, within Synpcc7942_0866 at 868.892 kb on - strand, within Synpcc7942_0866 at 868.892 kb on - strand, within Synpcc7942_0866 at 868.927 kb on - strand, within Synpcc7942_0866 at 868.930 kb on + strand, within Synpcc7942_0866 at 868.930 kb on + strand, within Synpcc7942_0866 at 868.930 kb on + strand, within Synpcc7942_0866 at 868.930 kb on + strand, within Synpcc7942_0866 at 868.939 kb on - strand, within Synpcc7942_0866 at 868.958 kb on + strand, within Synpcc7942_0866 at 868.977 kb on + strand, within Synpcc7942_0866 at 868.985 kb on - strand, within Synpcc7942_0866 at 868.991 kb on - strand, within Synpcc7942_0866 at 868.993 kb on + strand, within Synpcc7942_0866 at 869.009 kb on + strand, within Synpcc7942_0866 at 869.012 kb on + strand, within Synpcc7942_0866 at 869.012 kb on + strand, within Synpcc7942_0866 at 869.017 kb on - strand, within Synpcc7942_0866 at 869.017 kb on - strand, within Synpcc7942_0866 at 869.017 kb on - strand, within Synpcc7942_0866 at 869.020 kb on - strand, within Synpcc7942_0866 at 869.027 kb on - strand, within Synpcc7942_0866 at 869.061 kb on - strand, within Synpcc7942_0866 at 869.090 kb on + strand at 869.134 kb on + strand at 869.142 kb on - strand at 869.166 kb on + strand at 869.178 kb on + strand at 869.187 kb on + strand at 869.189 kb on + strand at 869.195 kb on - strand at 869.201 kb on + strand at 869.204 kb on - strand, within Synpcc7942_0867 at 869.209 kb on - strand, within Synpcc7942_0867 at 869.220 kb on + strand, within Synpcc7942_0867 at 869.269 kb on + strand, within Synpcc7942_0867 at 869.295 kb on + strand, within Synpcc7942_0867 at 869.337 kb on - strand, within Synpcc7942_0867 at 869.373 kb on + strand, within Synpcc7942_0867 at 869.381 kb on - strand, within Synpcc7942_0867 at 869.394 kb on - strand, within Synpcc7942_0867 at 869.399 kb on - strand, within Synpcc7942_0867 at 869.418 kb on + strand, within Synpcc7942_0867 at 869.432 kb on - strand, within Synpcc7942_0867 at 869.493 kb on + strand at 869.493 kb on + strand at 869.499 kb on + strand at 869.501 kb on - strand at 869.515 kb on - strand at 869.524 kb on + strand at 869.618 kb on + strand at 869.623 kb on + strand at 869.631 kb on - strand at 869.656 kb on + strand at 869.689 kb on - strand, within Synpcc7942_0868 at 869.721 kb on + strand, within Synpcc7942_0868 at 869.788 kb on - strand, within Synpcc7942_0868 at 869.804 kb on - strand, within Synpcc7942_0868 at 869.825 kb on + strand, within Synpcc7942_0868 at 869.825 kb on + strand, within Synpcc7942_0868 at 869.833 kb on - strand, within Synpcc7942_0868 at 869.864 kb on + strand, within Synpcc7942_0868 at 869.879 kb on + strand, within Synpcc7942_0868 at 869.894 kb on + strand, within Synpcc7942_0868 at 869.895 kb on + strand, within Synpcc7942_0868 at 869.903 kb on - strand, within Synpcc7942_0868 at 869.904 kb on + strand, within Synpcc7942_0868 at 869.907 kb on - strand, within Synpcc7942_0868 at 869.912 kb on - strand, within Synpcc7942_0868 at 869.912 kb on - strand, within Synpcc7942_0868 at 869.925 kb on - strand, within Synpcc7942_0868 at 869.937 kb on - strand, within Synpcc7942_0868 at 869.937 kb on - strand, within Synpcc7942_0868 at 869.950 kb on - strand, within Synpcc7942_0868 at 869.951 kb on + strand, within Synpcc7942_0868 at 869.983 kb on - strand, within Synpcc7942_0868 at 870.014 kb on - strand, within Synpcc7942_0868 at 870.042 kb on - strand, within Synpcc7942_0868 at 870.044 kb on - strand, within Synpcc7942_0868 at 870.044 kb on - strand, within Synpcc7942_0868 at 870.096 kb on + strand, within Synpcc7942_0868 at 870.097 kb on - strand, within Synpcc7942_0868 at 870.112 kb on - strand, within Synpcc7942_0868 at 870.126 kb on + strand, within Synpcc7942_0868 at 870.126 kb on + strand, within Synpcc7942_0868 at 870.126 kb on + strand, within Synpcc7942_0868 at 870.134 kb on - strand, within Synpcc7942_0868 at 870.159 kb on + strand, within Synpcc7942_0868 at 870.187 kb on + strand, within Synpcc7942_0868 at 870.202 kb on - strand, within Synpcc7942_0868 at 870.275 kb on + strand, within Synpcc7942_0868 at 870.294 kb on - strand, within Synpcc7942_0868 at 870.294 kb on - strand, within Synpcc7942_0868 at 870.351 kb on - strand, within Synpcc7942_0868 at 870.351 kb on - strand, within Synpcc7942_0868 at 870.358 kb on + strand, within Synpcc7942_0868 at 870.383 kb on + strand, within Synpcc7942_0868 at 870.383 kb on + strand, within Synpcc7942_0868 at 870.383 kb on + strand, within Synpcc7942_0868 at 870.407 kb on - strand, within Synpcc7942_0868 at 870.411 kb on + strand, within Synpcc7942_0868 at 870.462 kb on - strand, within Synpcc7942_0868
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 868,209 - Synpcc7942_0865 0.45 -1.1 868,270 + Synpcc7942_0865 0.58 -1.7 868,275 + Synpcc7942_0865 0.59 +1.3 868,289 + Synpcc7942_0865 0.62 -0.9 868,290 - Synpcc7942_0865 0.62 +0.5 868,294 + Synpcc7942_0865 0.63 -2.1 868,297 - Synpcc7942_0865 0.63 +1.2 868,314 - Synpcc7942_0865 0.67 +1.5 868,325 - Synpcc7942_0865 0.69 +1.0 868,339 + Synpcc7942_0865 0.72 -1.1 868,339 + Synpcc7942_0865 0.72 +0.9 868,339 + Synpcc7942_0865 0.72 -2.1 868,339 + Synpcc7942_0865 0.72 +1.9 868,339 + Synpcc7942_0865 0.72 +2.5 868,339 + Synpcc7942_0865 0.72 -2.7 868,347 - Synpcc7942_0865 0.73 +1.6 868,347 - Synpcc7942_0865 0.73 +1.8 868,347 - Synpcc7942_0865 0.73 +2.5 868,347 - Synpcc7942_0865 0.73 -1.0 868,381 + Synpcc7942_0865 0.80 -1.1 868,386 + Synpcc7942_0865 0.81 -2.1 868,386 + Synpcc7942_0865 0.81 -0.6 868,386 + Synpcc7942_0865 0.81 -0.1 868,393 + Synpcc7942_0865 0.83 -0.3 868,394 - Synpcc7942_0865 0.83 +3.5 868,394 - Synpcc7942_0865 0.83 +0.8 868,394 - Synpcc7942_0865 0.83 +0.2 868,394 - Synpcc7942_0865 0.83 +0.1 868,394 - Synpcc7942_0865 0.83 -0.1 868,398 + +3.6 868,401 - Synpcc7942_0865 0.84 +1.5 868,405 - Synpcc7942_0865 0.85 -1.8 868,433 + +0.2 868,451 + -1.1 868,492 + -0.1 868,501 + -1.9 868,501 + +1.0 868,501 + -2.7 868,501 + -0.7 868,501 + +2.5 868,501 + -0.5 868,501 + -2.1 868,509 - -1.9 868,509 - +1.1 868,512 + -0.1 868,512 + -0.7 868,514 - -0.8 868,520 - -0.1 868,520 - +0.3 868,522 + +0.9 868,522 + -0.1 868,522 + -0.1 868,530 - +0.3 868,530 - -0.1 868,530 - -0.3 868,530 - -2.9 868,530 - +1.5 868,595 - -1.7 868,617 - Synpcc7942_0866 0.13 -3.1 868,617 - Synpcc7942_0866 0.13 -1.1 868,617 - -1.1 868,677 - Synpcc7942_0866 0.24 -1.7 868,677 - Synpcc7942_0866 0.24 -3.1 868,738 + Synpcc7942_0866 0.34 -1.1 868,744 + Synpcc7942_0866 0.35 -1.6 868,749 - Synpcc7942_0866 0.36 -2.7 868,754 - Synpcc7942_0866 0.37 -3.7 868,754 - Synpcc7942_0866 0.37 -2.6 868,773 - Synpcc7942_0866 0.40 -2.1 868,854 + Synpcc7942_0866 0.54 -0.1 868,874 + Synpcc7942_0866 0.57 +1.9 868,879 + Synpcc7942_0866 0.58 -1.1 868,884 + Synpcc7942_0866 0.59 +0.9 868,884 + Synpcc7942_0866 0.59 -0.1 868,892 - Synpcc7942_0866 0.60 -1.9 868,892 - Synpcc7942_0866 0.60 -3.0 868,927 - Synpcc7942_0866 0.66 -2.5 868,930 + Synpcc7942_0866 0.67 -3.1 868,930 + Synpcc7942_0866 0.67 -2.5 868,930 + Synpcc7942_0866 0.67 -2.1 868,930 + Synpcc7942_0866 0.67 -1.7 868,939 - Synpcc7942_0866 0.69 -0.1 868,958 + Synpcc7942_0866 0.72 -1.1 868,977 + Synpcc7942_0866 0.75 -2.1 868,985 - Synpcc7942_0866 0.76 -3.8 868,991 - Synpcc7942_0866 0.77 -1.7 868,993 + Synpcc7942_0866 0.78 -0.1 869,009 + Synpcc7942_0866 0.81 -3.1 869,012 + Synpcc7942_0866 0.81 -0.0 869,012 + Synpcc7942_0866 0.81 +0.5 869,017 - Synpcc7942_0866 0.82 -1.3 869,017 - Synpcc7942_0866 0.82 -2.1 869,017 - Synpcc7942_0866 0.82 -0.9 869,020 - Synpcc7942_0866 0.82 -1.8 869,027 - Synpcc7942_0866 0.84 -1.1 869,061 - Synpcc7942_0866 0.90 -1.7 869,090 + -1.9 869,134 + -1.1 869,142 - -0.1 869,166 + +1.7 869,178 + +1.7 869,187 + -1.7 869,189 + -2.1 869,195 - +2.0 869,201 + +1.0 869,204 - Synpcc7942_0867 0.10 -0.1 869,209 - Synpcc7942_0867 0.12 -0.7 869,220 + Synpcc7942_0867 0.15 +0.7 869,269 + Synpcc7942_0867 0.30 -0.3 869,295 + Synpcc7942_0867 0.38 +1.1 869,337 - Synpcc7942_0867 0.50 +1.6 869,373 + Synpcc7942_0867 0.61 +0.5 869,381 - Synpcc7942_0867 0.63 +1.5 869,394 - Synpcc7942_0867 0.67 +1.3 869,399 - Synpcc7942_0867 0.68 +1.2 869,418 + Synpcc7942_0867 0.74 -0.4 869,432 - Synpcc7942_0867 0.78 +0.1 869,493 + -3.1 869,493 + +2.0 869,499 + +0.0 869,501 - -2.7 869,515 - +0.2 869,524 + +0.9 869,618 + +0.6 869,623 + +0.7 869,631 - +1.8 869,656 + +1.1 869,689 - Synpcc7942_0868 0.11 +0.2 869,721 + Synpcc7942_0868 0.12 +0.6 869,788 - Synpcc7942_0868 0.16 +0.7 869,804 - Synpcc7942_0868 0.17 -0.9 869,825 + Synpcc7942_0868 0.18 -0.6 869,825 + Synpcc7942_0868 0.18 +1.2 869,833 - Synpcc7942_0868 0.19 -0.1 869,864 + Synpcc7942_0868 0.21 +1.5 869,879 + Synpcc7942_0868 0.21 +1.8 869,894 + Synpcc7942_0868 0.22 -0.1 869,895 + Synpcc7942_0868 0.22 -3.1 869,903 - Synpcc7942_0868 0.23 +0.9 869,904 + Synpcc7942_0868 0.23 +1.1 869,907 - Synpcc7942_0868 0.23 +0.3 869,912 - Synpcc7942_0868 0.23 -0.0 869,912 - Synpcc7942_0868 0.23 +1.4 869,925 - Synpcc7942_0868 0.24 -0.4 869,937 - Synpcc7942_0868 0.25 -0.7 869,937 - Synpcc7942_0868 0.25 +0.3 869,950 - Synpcc7942_0868 0.25 +0.4 869,951 + Synpcc7942_0868 0.26 +1.0 869,983 - Synpcc7942_0868 0.27 +1.0 870,014 - Synpcc7942_0868 0.29 -0.3 870,042 - Synpcc7942_0868 0.31 -0.0 870,044 - Synpcc7942_0868 0.31 -0.9 870,044 - Synpcc7942_0868 0.31 +0.5 870,096 + Synpcc7942_0868 0.34 +0.1 870,097 - Synpcc7942_0868 0.34 +0.9 870,112 - Synpcc7942_0868 0.35 -0.9 870,126 + Synpcc7942_0868 0.36 +4.2 870,126 + Synpcc7942_0868 0.36 -0.1 870,126 + Synpcc7942_0868 0.36 -0.6 870,134 - Synpcc7942_0868 0.36 -0.1 870,159 + Synpcc7942_0868 0.37 +0.1 870,187 + Synpcc7942_0868 0.39 +0.6 870,202 - Synpcc7942_0868 0.40 +0.5 870,275 + Synpcc7942_0868 0.44 +0.0 870,294 - Synpcc7942_0868 0.45 +0.7 870,294 - Synpcc7942_0868 0.45 +1.5 870,351 - Synpcc7942_0868 0.48 -0.5 870,351 - Synpcc7942_0868 0.48 +2.5 870,358 + Synpcc7942_0868 0.49 -0.1 870,383 + Synpcc7942_0868 0.50 +0.7 870,383 + Synpcc7942_0868 0.50 +1.2 870,383 + Synpcc7942_0868 0.50 -0.9 870,407 - Synpcc7942_0868 0.52 -0.1 870,411 + Synpcc7942_0868 0.52 -1.4 870,462 - Synpcc7942_0868 0.55 +1.0
Or see this region's nucleotide sequence