Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0861 and Synpcc7942_0862 are separated by 126 nucleotides Synpcc7942_0862 and Synpcc7942_0863 are separated by 53 nucleotides Synpcc7942_0863 and Synpcc7942_0864 are separated by 186 nucleotides Synpcc7942_0864 and Synpcc7942_0865 are separated by 72 nucleotides
Synpcc7942_0861: Synpcc7942_0861 - bifunctional sterol desaturase/short chain dehydrogenase, at 864,180 to 865,469
_0861
Synpcc7942_0862: Synpcc7942_0862 - hypothetical protein, at 865,596 to 865,973
_0862
Synpcc7942_0863: Synpcc7942_0863 - hypothetical protein, at 866,027 to 867,208
_0863
Synpcc7942_0864: Synpcc7942_0864 - hypothetical protein, at 867,395 to 867,913
_0864
Synpcc7942_0865: Synpcc7942_0865 - nucleotide-binding protein, at 867,986 to 868,477
_0865
Position (kb) 866
867
868 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 865.461 kb on - strand at 865.528 kb on - strand at 865.549 kb on + strand at 865.557 kb on - strand at 865.558 kb on + strand at 865.562 kb on - strand at 865.576 kb on + strand at 865.576 kb on - strand at 865.576 kb on - strand at 865.582 kb on - strand at 865.583 kb on - strand at 865.587 kb on + strand at 865.608 kb on + strand at 865.610 kb on + strand at 865.613 kb on + strand at 865.621 kb on - strand at 865.621 kb on - strand at 865.625 kb on + strand at 865.625 kb on + strand at 865.635 kb on + strand, within Synpcc7942_0862 at 865.643 kb on + strand, within Synpcc7942_0862 at 865.643 kb on + strand, within Synpcc7942_0862 at 865.643 kb on + strand, within Synpcc7942_0862 at 865.643 kb on - strand, within Synpcc7942_0862 at 865.643 kb on - strand, within Synpcc7942_0862 at 865.651 kb on - strand, within Synpcc7942_0862 at 865.651 kb on - strand, within Synpcc7942_0862 at 865.651 kb on - strand, within Synpcc7942_0862 at 865.656 kb on - strand, within Synpcc7942_0862 at 865.660 kb on - strand, within Synpcc7942_0862 at 865.665 kb on - strand, within Synpcc7942_0862 at 865.681 kb on + strand, within Synpcc7942_0862 at 865.688 kb on - strand, within Synpcc7942_0862 at 865.694 kb on - strand, within Synpcc7942_0862 at 865.704 kb on + strand, within Synpcc7942_0862 at 865.712 kb on - strand, within Synpcc7942_0862 at 865.719 kb on + strand, within Synpcc7942_0862 at 865.724 kb on + strand, within Synpcc7942_0862 at 865.725 kb on - strand, within Synpcc7942_0862 at 865.727 kb on + strand, within Synpcc7942_0862 at 865.727 kb on - strand, within Synpcc7942_0862 at 865.727 kb on - strand, within Synpcc7942_0862 at 865.727 kb on - strand, within Synpcc7942_0862 at 865.737 kb on + strand, within Synpcc7942_0862 at 865.737 kb on + strand, within Synpcc7942_0862 at 865.745 kb on - strand, within Synpcc7942_0862 at 865.777 kb on - strand, within Synpcc7942_0862 at 865.797 kb on + strand, within Synpcc7942_0862 at 865.797 kb on + strand, within Synpcc7942_0862 at 865.805 kb on - strand, within Synpcc7942_0862 at 865.812 kb on + strand, within Synpcc7942_0862 at 865.820 kb on + strand, within Synpcc7942_0862 at 865.820 kb on + strand, within Synpcc7942_0862 at 865.823 kb on - strand, within Synpcc7942_0862 at 865.826 kb on - strand, within Synpcc7942_0862 at 865.828 kb on - strand, within Synpcc7942_0862 at 865.836 kb on + strand, within Synpcc7942_0862 at 865.844 kb on - strand, within Synpcc7942_0862 at 865.888 kb on - strand, within Synpcc7942_0862 at 865.903 kb on + strand, within Synpcc7942_0862 at 865.903 kb on - strand, within Synpcc7942_0862 at 865.972 kb on + strand at 865.982 kb on - strand at 866.035 kb on + strand at 866.035 kb on + strand at 866.038 kb on - strand at 866.045 kb on - strand at 866.047 kb on + strand at 866.047 kb on + strand at 866.053 kb on - strand at 866.094 kb on - strand at 866.112 kb on + strand at 866.126 kb on + strand at 866.147 kb on + strand, within Synpcc7942_0863 at 866.188 kb on + strand, within Synpcc7942_0863 at 866.221 kb on + strand, within Synpcc7942_0863 at 866.229 kb on - strand, within Synpcc7942_0863 at 866.236 kb on - strand, within Synpcc7942_0863 at 866.241 kb on + strand, within Synpcc7942_0863 at 866.249 kb on - strand, within Synpcc7942_0863 at 866.249 kb on - strand, within Synpcc7942_0863 at 866.249 kb on - strand, within Synpcc7942_0863 at 866.256 kb on + strand, within Synpcc7942_0863 at 866.283 kb on + strand, within Synpcc7942_0863 at 866.310 kb on + strand, within Synpcc7942_0863 at 866.332 kb on + strand, within Synpcc7942_0863 at 866.332 kb on + strand, within Synpcc7942_0863 at 866.387 kb on - strand, within Synpcc7942_0863 at 866.390 kb on + strand, within Synpcc7942_0863 at 866.397 kb on - strand, within Synpcc7942_0863 at 866.412 kb on + strand, within Synpcc7942_0863 at 866.423 kb on - strand, within Synpcc7942_0863 at 866.456 kb on - strand, within Synpcc7942_0863 at 866.458 kb on + strand, within Synpcc7942_0863 at 866.458 kb on + strand at 866.466 kb on - strand, within Synpcc7942_0863 at 866.474 kb on - strand, within Synpcc7942_0863 at 866.491 kb on + strand, within Synpcc7942_0863 at 866.507 kb on - strand, within Synpcc7942_0863 at 866.525 kb on + strand, within Synpcc7942_0863 at 866.525 kb on + strand, within Synpcc7942_0863 at 866.533 kb on - strand, within Synpcc7942_0863 at 866.533 kb on - strand, within Synpcc7942_0863 at 866.560 kb on + strand, within Synpcc7942_0863 at 866.583 kb on - strand, within Synpcc7942_0863 at 866.617 kb on + strand, within Synpcc7942_0863 at 866.617 kb on + strand, within Synpcc7942_0863 at 866.632 kb on + strand, within Synpcc7942_0863 at 866.632 kb on + strand, within Synpcc7942_0863 at 866.640 kb on - strand, within Synpcc7942_0863 at 866.640 kb on - strand at 866.644 kb on + strand, within Synpcc7942_0863 at 866.655 kb on + strand, within Synpcc7942_0863 at 866.663 kb on - strand, within Synpcc7942_0863 at 866.684 kb on - strand, within Synpcc7942_0863 at 866.733 kb on + strand, within Synpcc7942_0863 at 866.738 kb on + strand, within Synpcc7942_0863 at 866.738 kb on + strand, within Synpcc7942_0863 at 866.746 kb on - strand, within Synpcc7942_0863 at 866.757 kb on + strand at 866.765 kb on - strand, within Synpcc7942_0863 at 866.765 kb on - strand, within Synpcc7942_0863 at 866.776 kb on + strand, within Synpcc7942_0863 at 866.776 kb on + strand, within Synpcc7942_0863 at 866.776 kb on + strand, within Synpcc7942_0863 at 866.789 kb on - strand, within Synpcc7942_0863 at 866.789 kb on - strand, within Synpcc7942_0863 at 866.822 kb on + strand, within Synpcc7942_0863 at 866.822 kb on + strand, within Synpcc7942_0863 at 866.882 kb on + strand, within Synpcc7942_0863 at 866.890 kb on - strand, within Synpcc7942_0863 at 866.890 kb on - strand, within Synpcc7942_0863 at 866.890 kb on - strand, within Synpcc7942_0863 at 866.890 kb on - strand, within Synpcc7942_0863 at 866.890 kb on - strand, within Synpcc7942_0863 at 866.902 kb on + strand, within Synpcc7942_0863 at 867.014 kb on - strand, within Synpcc7942_0863 at 867.088 kb on - strand, within Synpcc7942_0863 at 867.109 kb on + strand at 867.129 kb on + strand at 867.146 kb on + strand at 867.156 kb on + strand at 867.188 kb on - strand at 867.221 kb on - strand at 867.221 kb on - strand at 867.239 kb on - strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.304 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.311 kb on + strand at 867.311 kb on + strand at 867.314 kb on - strand at 867.314 kb on - strand at 867.319 kb on - strand at 867.329 kb on - strand at 867.329 kb on - strand at 867.332 kb on + strand at 867.332 kb on + strand at 867.332 kb on + strand at 867.339 kb on - strand at 867.347 kb on + strand at 867.347 kb on + strand at 867.347 kb on + strand at 867.403 kb on + strand at 867.415 kb on + strand at 867.421 kb on + strand at 867.429 kb on - strand at 867.481 kb on + strand, within Synpcc7942_0864 at 867.769 kb on + strand at 867.769 kb on + strand at 867.917 kb on + strand at 867.925 kb on - strand at 867.925 kb on - strand at 867.926 kb on + strand at 867.934 kb on - strand at 867.963 kb on - strand at 868.029 kb on + strand at 868.029 kb on + strand at 868.049 kb on + strand, within Synpcc7942_0865 at 868.068 kb on + strand, within Synpcc7942_0865 at 868.107 kb on + strand, within Synpcc7942_0865
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 865,461 - +0.5 865,528 - +0.6 865,549 + -0.1 865,557 - -2.0 865,558 + -3.3 865,562 - -3.2 865,576 + -2.6 865,576 - -2.0 865,576 - -1.7 865,582 - -2.6 865,583 - +0.5 865,587 + +1.2 865,608 + -4.0 865,610 + -1.1 865,613 + -4.9 865,621 - -1.5 865,621 - -2.5 865,625 + -3.5 865,625 + -3.5 865,635 + Synpcc7942_0862 0.10 -1.4 865,643 + Synpcc7942_0862 0.12 -3.1 865,643 + Synpcc7942_0862 0.12 -3.1 865,643 + Synpcc7942_0862 0.12 -2.5 865,643 - Synpcc7942_0862 0.12 -3.6 865,643 - Synpcc7942_0862 0.12 -3.1 865,651 - Synpcc7942_0862 0.15 -2.1 865,651 - Synpcc7942_0862 0.15 -2.5 865,651 - Synpcc7942_0862 0.15 -4.3 865,656 - Synpcc7942_0862 0.16 -3.9 865,660 - Synpcc7942_0862 0.17 -3.7 865,665 - Synpcc7942_0862 0.18 -4.8 865,681 + Synpcc7942_0862 0.22 -3.6 865,688 - Synpcc7942_0862 0.24 -1.7 865,694 - Synpcc7942_0862 0.26 -0.4 865,704 + Synpcc7942_0862 0.29 -3.7 865,712 - Synpcc7942_0862 0.31 -2.1 865,719 + Synpcc7942_0862 0.33 -5.3 865,724 + Synpcc7942_0862 0.34 -5.0 865,725 - Synpcc7942_0862 0.34 -2.5 865,727 + Synpcc7942_0862 0.35 -3.8 865,727 - Synpcc7942_0862 0.35 -1.5 865,727 - Synpcc7942_0862 0.35 -1.9 865,727 - Synpcc7942_0862 0.35 -5.1 865,737 + Synpcc7942_0862 0.37 -3.1 865,737 + Synpcc7942_0862 0.37 -2.6 865,745 - Synpcc7942_0862 0.39 -1.1 865,777 - Synpcc7942_0862 0.48 -3.9 865,797 + Synpcc7942_0862 0.53 -2.6 865,797 + Synpcc7942_0862 0.53 -1.7 865,805 - Synpcc7942_0862 0.55 +0.2 865,812 + Synpcc7942_0862 0.57 -3.1 865,820 + Synpcc7942_0862 0.59 -5.7 865,820 + Synpcc7942_0862 0.59 -3.1 865,823 - Synpcc7942_0862 0.60 -3.1 865,826 - Synpcc7942_0862 0.61 -4.6 865,828 - Synpcc7942_0862 0.61 -3.7 865,836 + Synpcc7942_0862 0.63 -2.1 865,844 - Synpcc7942_0862 0.66 -2.3 865,888 - Synpcc7942_0862 0.77 -3.9 865,903 + Synpcc7942_0862 0.81 -1.4 865,903 - Synpcc7942_0862 0.81 -1.7 865,972 + -0.7 865,982 - +0.7 866,035 + +0.5 866,035 + +0.5 866,038 - -0.3 866,045 - -1.7 866,047 + -0.2 866,047 + -2.5 866,053 - -0.0 866,094 - -1.9 866,112 + -0.9 866,126 + -2.1 866,147 + Synpcc7942_0863 0.10 -3.8 866,188 + Synpcc7942_0863 0.14 -4.0 866,221 + Synpcc7942_0863 0.16 -1.1 866,229 - Synpcc7942_0863 0.17 -2.3 866,236 - Synpcc7942_0863 0.18 -2.1 866,241 + Synpcc7942_0863 0.18 -2.9 866,249 - Synpcc7942_0863 0.19 -3.1 866,249 - Synpcc7942_0863 0.19 -1.0 866,249 - Synpcc7942_0863 0.19 -2.7 866,256 + Synpcc7942_0863 0.19 -3.8 866,283 + Synpcc7942_0863 0.22 -2.1 866,310 + Synpcc7942_0863 0.24 -2.0 866,332 + Synpcc7942_0863 0.26 -1.1 866,332 + Synpcc7942_0863 0.26 -0.1 866,387 - Synpcc7942_0863 0.30 -4.7 866,390 + Synpcc7942_0863 0.31 -1.5 866,397 - Synpcc7942_0863 0.31 -2.4 866,412 + Synpcc7942_0863 0.33 -1.1 866,423 - Synpcc7942_0863 0.34 -2.7 866,456 - Synpcc7942_0863 0.36 -2.5 866,458 + Synpcc7942_0863 0.36 -3.1 866,458 + -0.7 866,466 - Synpcc7942_0863 0.37 -0.1 866,474 - Synpcc7942_0863 0.38 -1.1 866,491 + Synpcc7942_0863 0.39 -2.9 866,507 - Synpcc7942_0863 0.41 -2.1 866,525 + Synpcc7942_0863 0.42 -2.5 866,525 + Synpcc7942_0863 0.42 -4.2 866,533 - Synpcc7942_0863 0.43 -2.5 866,533 - Synpcc7942_0863 0.43 -1.8 866,560 + Synpcc7942_0863 0.45 -3.1 866,583 - Synpcc7942_0863 0.47 -0.9 866,617 + Synpcc7942_0863 0.50 -2.1 866,617 + Synpcc7942_0863 0.50 -0.1 866,632 + Synpcc7942_0863 0.51 -1.1 866,632 + Synpcc7942_0863 0.51 -3.5 866,640 - Synpcc7942_0863 0.52 -1.1 866,640 - -1.7 866,644 + Synpcc7942_0863 0.52 -3.7 866,655 + Synpcc7942_0863 0.53 -2.7 866,663 - Synpcc7942_0863 0.54 -2.7 866,684 - Synpcc7942_0863 0.56 -0.5 866,733 + Synpcc7942_0863 0.60 -2.2 866,738 + Synpcc7942_0863 0.60 -0.7 866,738 + Synpcc7942_0863 0.60 -2.7 866,746 - Synpcc7942_0863 0.61 -1.8 866,757 + -1.1 866,765 - Synpcc7942_0863 0.62 -0.5 866,765 - Synpcc7942_0863 0.62 -2.9 866,776 + Synpcc7942_0863 0.63 -2.2 866,776 + Synpcc7942_0863 0.63 -0.1 866,776 + Synpcc7942_0863 0.63 -0.1 866,789 - Synpcc7942_0863 0.64 -2.3 866,789 - Synpcc7942_0863 0.64 -2.7 866,822 + Synpcc7942_0863 0.67 -2.1 866,822 + Synpcc7942_0863 0.67 -1.9 866,882 + Synpcc7942_0863 0.72 -3.5 866,890 - Synpcc7942_0863 0.73 -3.3 866,890 - Synpcc7942_0863 0.73 -1.7 866,890 - Synpcc7942_0863 0.73 -1.7 866,890 - Synpcc7942_0863 0.73 -3.5 866,890 - Synpcc7942_0863 0.73 -1.5 866,902 + Synpcc7942_0863 0.74 -2.4 867,014 - Synpcc7942_0863 0.84 +0.1 867,088 - Synpcc7942_0863 0.90 -2.2 867,109 + -0.7 867,129 + -2.2 867,146 + -1.5 867,156 + -0.1 867,188 - -0.5 867,221 - -0.1 867,221 - -0.4 867,239 - -1.5 867,301 + +2.7 867,301 + +1.1 867,301 + +0.9 867,301 + -2.8 867,301 + -1.6 867,301 + +0.7 867,301 + -0.1 867,301 + -1.7 867,301 + -0.1 867,301 + -0.1 867,301 + -1.1 867,304 - +0.5 867,309 - +0.3 867,309 - -1.1 867,309 - -0.3 867,309 - +0.4 867,309 - -1.1 867,309 - -0.9 867,309 - +1.0 867,309 - -3.8 867,309 - +0.5 867,309 - -2.1 867,309 - -1.1 867,309 - +1.5 867,309 - -1.7 867,309 - -0.1 867,311 + -1.1 867,311 + -0.7 867,314 - +1.5 867,314 - +2.9 867,319 - +0.3 867,329 - +2.0 867,329 - -0.7 867,332 + +1.9 867,332 + +2.2 867,332 + +1.3 867,339 - +0.9 867,347 + -1.7 867,347 + +1.5 867,347 + -1.7 867,403 + -1.7 867,415 + -2.1 867,421 + -2.7 867,429 - -1.7 867,481 + Synpcc7942_0864 0.17 -1.1 867,769 + -0.1 867,769 + +1.5 867,917 + +0.3 867,925 - +0.9 867,925 - +0.3 867,926 + -1.1 867,934 - -0.3 867,963 - +1.5 868,029 + -0.7 868,029 + -2.1 868,049 + Synpcc7942_0865 0.13 +0.9 868,068 + Synpcc7942_0865 0.17 +0.9 868,107 + Synpcc7942_0865 0.25 +2.2
Or see this region's nucleotide sequence