Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0816

Experiment: Ceftazidime 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0814 and livF are separated by 6 nucleotideslivF and Synpcc7942_0816 are separated by 84 nucleotidesSynpcc7942_0816 and Synpcc7942_0817 are separated by 104 nucleotidesSynpcc7942_0817 and purS are separated by 231 nucleotidespurS and purL overlap by 4 nucleotides Synpcc7942_0814: Synpcc7942_0814 - ferredoxin-like protein, at 809,134 to 809,358 _0814 Synpcc7942_0815: livF - ATPase, at 809,365 to 810,096 livF Synpcc7942_0816: Synpcc7942_0816 - diguanylate cyclase/phosphodiesterase, at 810,181 to 812,226 _0816 Synpcc7942_0817: Synpcc7942_0817 - putative ferric uptake regulator, FUR family, at 812,331 to 812,723 _0817 Synpcc7942_0818: purS - phosphoribosylformylglycinamidine synthase subunit PurS, at 812,955 to 813,224 purS Synpcc7942_0819: purL - phosphoribosylformylglycinamidine synthase subunit I, at 813,221 to 813,886 purL Position (kb) 810 811 812 813Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 809.353 kb on + strandat 809.360 kb on + strandat 809.372 kb on - strandat 809.382 kb on - strandat 809.477 kb on + strand, within livFat 809.502 kb on + strand, within livFat 809.547 kb on - strand, within livFat 809.567 kb on + strand, within livFat 809.572 kb on + strand, within livFat 809.575 kb on - strand, within livFat 809.588 kb on + strand, within livFat 809.607 kb on + strand, within livFat 809.659 kb on - strand, within livFat 809.675 kb on + strand, within livFat 809.729 kb on + strand, within livFat 809.729 kb on + strand, within livFat 809.729 kb on + strand, within livFat 809.729 kb on + strand, within livFat 809.729 kb on + strand, within livFat 809.729 kb on + strand, within livFat 809.729 kb on + strand, within livFat 809.737 kb on - strand, within livFat 809.737 kb on - strand, within livFat 809.774 kb on + strand, within livFat 809.779 kb on + strand, within livFat 809.805 kb on - strand, within livFat 809.864 kb on + strand, within livFat 809.893 kb on - strand, within livFat 809.925 kb on - strand, within livFat 809.925 kb on - strand, within livFat 809.952 kb on + strand, within livFat 809.969 kb on + strand, within livFat 809.973 kb on + strand, within livFat 810.032 kb on + strandat 810.040 kb on - strandat 810.071 kb on + strandat 810.074 kb on - strandat 810.077 kb on - strandat 810.092 kb on + strandat 810.097 kb on - strandat 810.224 kb on - strandat 810.240 kb on - strandat 810.309 kb on + strandat 810.409 kb on + strand, within Synpcc7942_0816at 810.425 kb on + strand, within Synpcc7942_0816at 810.463 kb on - strand, within Synpcc7942_0816at 810.464 kb on - strand, within Synpcc7942_0816at 810.583 kb on - strand, within Synpcc7942_0816at 810.597 kb on - strand, within Synpcc7942_0816at 810.613 kb on + strand, within Synpcc7942_0816at 810.621 kb on - strand, within Synpcc7942_0816at 810.661 kb on - strand, within Synpcc7942_0816at 810.750 kb on - strand, within Synpcc7942_0816at 810.885 kb on + strand, within Synpcc7942_0816at 810.885 kb on + strand, within Synpcc7942_0816at 810.886 kb on - strand, within Synpcc7942_0816at 810.886 kb on - strand, within Synpcc7942_0816at 810.893 kb on - strand, within Synpcc7942_0816at 810.895 kb on + strand, within Synpcc7942_0816at 810.937 kb on + strand, within Synpcc7942_0816at 810.949 kb on + strand, within Synpcc7942_0816at 810.949 kb on + strand, within Synpcc7942_0816at 810.957 kb on - strand, within Synpcc7942_0816at 810.957 kb on - strand, within Synpcc7942_0816at 810.957 kb on - strand, within Synpcc7942_0816at 810.979 kb on + strand, within Synpcc7942_0816at 810.979 kb on + strand, within Synpcc7942_0816at 810.999 kb on + strand, within Synpcc7942_0816at 811.004 kb on + strand, within Synpcc7942_0816at 811.007 kb on - strand, within Synpcc7942_0816at 811.012 kb on - strand, within Synpcc7942_0816at 811.012 kb on - strand, within Synpcc7942_0816at 811.016 kb on + strand, within Synpcc7942_0816at 811.085 kb on - strand, within Synpcc7942_0816at 811.087 kb on + strand, within Synpcc7942_0816at 811.095 kb on - strand, within Synpcc7942_0816at 811.095 kb on - strand, within Synpcc7942_0816at 811.095 kb on - strand, within Synpcc7942_0816at 811.110 kb on + strand, within Synpcc7942_0816at 811.118 kb on - strand, within Synpcc7942_0816at 811.141 kb on - strand, within Synpcc7942_0816at 811.189 kb on + strand, within Synpcc7942_0816at 811.220 kb on - strand, within Synpcc7942_0816at 811.254 kb on + strand, within Synpcc7942_0816at 811.254 kb on + strand, within Synpcc7942_0816at 811.257 kb on - strand, within Synpcc7942_0816at 811.262 kb on - strand, within Synpcc7942_0816at 811.262 kb on - strand, within Synpcc7942_0816at 811.329 kb on - strand, within Synpcc7942_0816at 811.361 kb on + strand, within Synpcc7942_0816at 811.387 kb on - strand, within Synpcc7942_0816at 811.397 kb on + strandat 811.421 kb on - strandat 811.440 kb on - strand, within Synpcc7942_0816at 811.445 kb on - strand, within Synpcc7942_0816at 811.622 kb on + strand, within Synpcc7942_0816at 811.644 kb on - strand, within Synpcc7942_0816at 811.650 kb on - strand, within Synpcc7942_0816at 811.670 kb on + strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.758 kb on - strand, within Synpcc7942_0816at 811.865 kb on + strand, within Synpcc7942_0816at 811.871 kb on + strand, within Synpcc7942_0816at 811.873 kb on - strand, within Synpcc7942_0816at 812.156 kb on + strandat 812.217 kb on - strandat 812.227 kb on + strandat 812.375 kb on + strand, within Synpcc7942_0817at 812.383 kb on - strand, within Synpcc7942_0817at 812.409 kb on + strand, within Synpcc7942_0817at 812.420 kb on + strand, within Synpcc7942_0817at 812.433 kb on + strand, within Synpcc7942_0817at 812.433 kb on + strand, within Synpcc7942_0817at 812.438 kb on + strand, within Synpcc7942_0817at 812.441 kb on - strand, within Synpcc7942_0817at 812.441 kb on - strand, within Synpcc7942_0817at 812.473 kb on - strand, within Synpcc7942_0817at 812.475 kb on - strand, within Synpcc7942_0817at 812.508 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.528 kb on - strand, within Synpcc7942_0817at 812.558 kb on + strand, within Synpcc7942_0817at 812.566 kb on - strand, within Synpcc7942_0817at 812.568 kb on + strand, within Synpcc7942_0817at 812.594 kb on - strand, within Synpcc7942_0817at 812.605 kb on + strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.638 kb on - strand, within Synpcc7942_0817at 812.643 kb on - strand, within Synpcc7942_0817at 812.645 kb on - strand, within Synpcc7942_0817at 812.651 kb on - strand, within Synpcc7942_0817at 812.661 kb on - strand, within Synpcc7942_0817at 812.663 kb on + strand, within Synpcc7942_0817at 812.673 kb on + strand, within Synpcc7942_0817at 812.673 kb on + strand, within Synpcc7942_0817at 812.681 kb on - strand, within Synpcc7942_0817at 812.718 kb on + strandat 812.718 kb on + strandat 812.718 kb on + strandat 812.725 kb on + strandat 812.727 kb on - strandat 812.731 kb on + strandat 812.744 kb on + strandat 812.745 kb on + strandat 812.745 kb on + strandat 812.759 kb on - strandat 812.774 kb on - strandat 812.778 kb on + strandat 812.779 kb on + strandat 812.793 kb on - strandat 812.793 kb on - strandat 812.838 kb on + strandat 812.846 kb on + strandat 812.851 kb on + strandat 812.854 kb on - strandat 812.873 kb on - strandat 812.893 kb on + strandat 812.904 kb on - strandat 813.219 kb on - strandat 813.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml
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809,353 + +1.5
809,360 + +1.0
809,372 - +1.6
809,382 - +0.9
809,477 + livF Synpcc7942_0815 0.15 -1.2
809,502 + livF Synpcc7942_0815 0.19 +0.5
809,547 - livF Synpcc7942_0815 0.25 +1.9
809,567 + livF Synpcc7942_0815 0.28 -2.1
809,572 + livF Synpcc7942_0815 0.28 +0.6
809,575 - livF Synpcc7942_0815 0.29 +0.1
809,588 + livF Synpcc7942_0815 0.30 -0.1
809,607 + livF Synpcc7942_0815 0.33 -1.1
809,659 - livF Synpcc7942_0815 0.40 +0.9
809,675 + livF Synpcc7942_0815 0.42 -1.1
809,729 + livF Synpcc7942_0815 0.50 -0.1
809,729 + livF Synpcc7942_0815 0.50 +0.3
809,729 + livF Synpcc7942_0815 0.50 +1.0
809,729 + livF Synpcc7942_0815 0.50 +0.4
809,729 + livF Synpcc7942_0815 0.50 -1.1
809,729 + livF Synpcc7942_0815 0.50 +1.0
809,729 + livF Synpcc7942_0815 0.50 +0.8
809,737 - livF Synpcc7942_0815 0.51 +0.1
809,737 - livF Synpcc7942_0815 0.51 -1.1
809,774 + livF Synpcc7942_0815 0.56 +0.4
809,779 + livF Synpcc7942_0815 0.57 -0.5
809,805 - livF Synpcc7942_0815 0.60 +1.3
809,864 + livF Synpcc7942_0815 0.68 -0.0
809,893 - livF Synpcc7942_0815 0.72 +0.4
809,925 - livF Synpcc7942_0815 0.77 -0.0
809,925 - livF Synpcc7942_0815 0.77 +0.7
809,952 + livF Synpcc7942_0815 0.80 +1.0
809,969 + livF Synpcc7942_0815 0.83 -3.1
809,973 + livF Synpcc7942_0815 0.83 +0.5
810,032 + +0.3
810,040 - -1.1
810,071 + +0.7
810,074 - +0.5
810,077 - +0.7
810,092 + -2.1
810,097 - -0.8
810,224 - -0.5
810,240 - +0.1
810,309 + +1.1
810,409 + Synpcc7942_0816 0.11 +0.6
810,425 + Synpcc7942_0816 0.12 +1.1
810,463 - Synpcc7942_0816 0.14 +2.3
810,464 - Synpcc7942_0816 0.14 -1.3
810,583 - Synpcc7942_0816 0.20 +1.9
810,597 - Synpcc7942_0816 0.20 +0.6
810,613 + Synpcc7942_0816 0.21 +1.7
810,621 - Synpcc7942_0816 0.22 -0.9
810,661 - Synpcc7942_0816 0.23 +0.3
810,750 - Synpcc7942_0816 0.28 -1.7
810,885 + Synpcc7942_0816 0.34 +0.9
810,885 + Synpcc7942_0816 0.34 +0.4
810,886 - Synpcc7942_0816 0.34 +1.0
810,886 - Synpcc7942_0816 0.34 +0.5
810,893 - Synpcc7942_0816 0.35 +1.5
810,895 + Synpcc7942_0816 0.35 +3.3
810,937 + Synpcc7942_0816 0.37 +1.5
810,949 + Synpcc7942_0816 0.38 -0.1
810,949 + Synpcc7942_0816 0.38 +2.7
810,957 - Synpcc7942_0816 0.38 -1.5
810,957 - Synpcc7942_0816 0.38 -0.2
810,957 - Synpcc7942_0816 0.38 -1.7
810,979 + Synpcc7942_0816 0.39 -0.5
810,979 + Synpcc7942_0816 0.39 -0.7
810,999 + Synpcc7942_0816 0.40 +1.0
811,004 + Synpcc7942_0816 0.40 +0.9
811,007 - Synpcc7942_0816 0.40 +1.3
811,012 - Synpcc7942_0816 0.41 -1.7
811,012 - Synpcc7942_0816 0.41 +0.8
811,016 + Synpcc7942_0816 0.41 -1.1
811,085 - Synpcc7942_0816 0.44 -3.5
811,087 + Synpcc7942_0816 0.44 +3.8
811,095 - Synpcc7942_0816 0.45 +0.5
811,095 - Synpcc7942_0816 0.45 +1.3
811,095 - Synpcc7942_0816 0.45 +0.1
811,110 + Synpcc7942_0816 0.45 +0.1
811,118 - Synpcc7942_0816 0.46 +0.2
811,141 - Synpcc7942_0816 0.47 -0.0
811,189 + Synpcc7942_0816 0.49 +0.1
811,220 - Synpcc7942_0816 0.51 +0.4
811,254 + Synpcc7942_0816 0.52 +1.1
811,254 + Synpcc7942_0816 0.52 +1.5
811,257 - Synpcc7942_0816 0.53 +1.9
811,262 - Synpcc7942_0816 0.53 -0.1
811,262 - Synpcc7942_0816 0.53 +0.0
811,329 - Synpcc7942_0816 0.56 +1.3
811,361 + Synpcc7942_0816 0.58 -0.1
811,387 - Synpcc7942_0816 0.59 -1.1
811,397 + +2.5
811,421 - +1.6
811,440 - Synpcc7942_0816 0.62 -0.1
811,445 - Synpcc7942_0816 0.62 +0.9
811,622 + Synpcc7942_0816 0.70 +2.2
811,644 - Synpcc7942_0816 0.72 -0.4
811,650 - Synpcc7942_0816 0.72 +0.9
811,670 + Synpcc7942_0816 0.73 -0.3
811,702 - Synpcc7942_0816 0.74 +1.0
811,702 - Synpcc7942_0816 0.74 -2.3
811,702 - Synpcc7942_0816 0.74 -0.2
811,758 - Synpcc7942_0816 0.77 +1.6
811,865 + Synpcc7942_0816 0.82 -2.7
811,871 + Synpcc7942_0816 0.83 +0.8
811,873 - Synpcc7942_0816 0.83 +1.6
812,156 + +0.9
812,217 - +2.2
812,227 + -1.4
812,375 + Synpcc7942_0817 0.11 -1.3
812,383 - Synpcc7942_0817 0.13 +2.2
812,409 + Synpcc7942_0817 0.20 +2.0
812,420 + Synpcc7942_0817 0.23 -1.7
812,433 + Synpcc7942_0817 0.26 -3.6
812,433 + Synpcc7942_0817 0.26 +0.0
812,438 + Synpcc7942_0817 0.27 -0.4
812,441 - Synpcc7942_0817 0.28 +0.5
812,441 - Synpcc7942_0817 0.28 +0.9
812,473 - Synpcc7942_0817 0.36 +0.1
812,475 - Synpcc7942_0817 0.37 +1.0
812,508 + Synpcc7942_0817 0.45 -0.9
812,515 + Synpcc7942_0817 0.47 -0.1
812,515 + Synpcc7942_0817 0.47 -1.9
812,515 + Synpcc7942_0817 0.47 +0.9
812,523 - Synpcc7942_0817 0.49 -0.7
812,523 - Synpcc7942_0817 0.49 +1.2
812,523 - Synpcc7942_0817 0.49 -0.5
812,528 - Synpcc7942_0817 0.50 -0.5
812,558 + Synpcc7942_0817 0.58 +0.2
812,566 - Synpcc7942_0817 0.60 -0.1
812,568 + Synpcc7942_0817 0.60 +0.6
812,594 - Synpcc7942_0817 0.67 +2.9
812,605 + Synpcc7942_0817 0.70 -0.6
812,621 - Synpcc7942_0817 0.74 +0.9
812,621 - Synpcc7942_0817 0.74 +1.2
812,621 - Synpcc7942_0817 0.74 +1.4
812,638 - Synpcc7942_0817 0.78 +2.0
812,643 - Synpcc7942_0817 0.79 +0.7
812,645 - Synpcc7942_0817 0.80 -0.8
812,651 - Synpcc7942_0817 0.81 +0.6
812,661 - Synpcc7942_0817 0.84 +1.1
812,663 + Synpcc7942_0817 0.84 +1.3
812,673 + Synpcc7942_0817 0.87 -0.9
812,673 + Synpcc7942_0817 0.87 -1.1
812,681 - Synpcc7942_0817 0.89 -0.7
812,718 + -1.5
812,718 + +2.4
812,718 + -0.0
812,725 + -1.1
812,727 - -0.6
812,731 + -0.0
812,744 + -2.5
812,745 + -0.7
812,745 + -1.4
812,759 - -2.4
812,774 - -0.4
812,778 + -0.1
812,779 + +0.3
812,793 - -1.1
812,793 - +0.5
812,838 + +1.5
812,846 + +0.2
812,851 + +0.5
812,854 - -0.1
812,873 - -1.1
812,893 + +1.6
812,904 - -0.1
813,219 - -0.1
813,219 - +0.0

Or see this region's nucleotide sequence