Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0786 and phoA are separated by 64 nucleotides phoA and gst1 are separated by 68 nucleotides gst1 and Synpcc7942_0789 are separated by 95 nucleotides
Synpcc7942_0786: Synpcc7942_0786 - hypothetical protein, at 782,076 to 782,942
_0786
Synpcc7942_0787: phoA - putative purple acid phosphatase, at 783,007 to 783,885
phoA
Synpcc7942_0788: gst1 - glutathione S-transferase, at 783,954 to 784,748
gst1
Synpcc7942_0789: Synpcc7942_0789 - hypothetical protein, at 784,844 to 785,167
_0789
Position (kb) 783
784 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 782.027 kb on - strand at 782.027 kb on - strand at 782.027 kb on - strand at 782.027 kb on - strand at 782.036 kb on + strand at 782.036 kb on + strand at 782.041 kb on + strand at 782.041 kb on + strand at 782.041 kb on + strand at 782.044 kb on - strand at 782.049 kb on - strand at 782.059 kb on - strand at 782.084 kb on + strand at 782.094 kb on + strand at 782.094 kb on + strand at 782.112 kb on - strand at 782.112 kb on - strand at 782.140 kb on - strand at 782.166 kb on + strand, within Synpcc7942_0786 at 782.166 kb on + strand, within Synpcc7942_0786 at 782.174 kb on - strand, within Synpcc7942_0786 at 782.174 kb on - strand, within Synpcc7942_0786 at 782.212 kb on + strand, within Synpcc7942_0786 at 782.217 kb on + strand, within Synpcc7942_0786 at 782.242 kb on - strand, within Synpcc7942_0786 at 782.244 kb on - strand, within Synpcc7942_0786 at 782.252 kb on - strand, within Synpcc7942_0786 at 782.256 kb on + strand, within Synpcc7942_0786 at 782.271 kb on + strand, within Synpcc7942_0786 at 782.298 kb on + strand, within Synpcc7942_0786 at 782.305 kb on + strand, within Synpcc7942_0786 at 782.311 kb on - strand, within Synpcc7942_0786 at 782.313 kb on - strand, within Synpcc7942_0786 at 782.333 kb on + strand, within Synpcc7942_0786 at 782.364 kb on - strand, within Synpcc7942_0786 at 782.387 kb on - strand, within Synpcc7942_0786 at 782.387 kb on - strand, within Synpcc7942_0786 at 782.406 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.434 kb on + strand, within Synpcc7942_0786 at 782.602 kb on - strand, within Synpcc7942_0786 at 782.605 kb on + strand, within Synpcc7942_0786 at 782.618 kb on + strand, within Synpcc7942_0786 at 782.706 kb on + strand, within Synpcc7942_0786 at 782.792 kb on + strand, within Synpcc7942_0786 at 782.800 kb on - strand, within Synpcc7942_0786 at 782.800 kb on - strand, within Synpcc7942_0786 at 782.813 kb on + strand, within Synpcc7942_0786 at 782.837 kb on + strand, within Synpcc7942_0786 at 782.852 kb on + strand, within Synpcc7942_0786 at 782.852 kb on + strand, within Synpcc7942_0786 at 782.941 kb on + strand at 782.979 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.022 kb on + strand at 783.042 kb on + strand at 783.042 kb on + strand at 783.042 kb on + strand at 783.078 kb on - strand at 783.082 kb on - strand at 783.091 kb on + strand at 783.097 kb on - strand, within phoA at 783.105 kb on - strand, within phoA at 783.134 kb on - strand, within phoA at 783.162 kb on + strand, within phoA at 783.178 kb on + strand, within phoA at 783.227 kb on + strand, within phoA at 783.267 kb on - strand, within phoA at 783.285 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.308 kb on + strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.315 kb on - strand, within phoA at 783.324 kb on + strand, within phoA at 783.349 kb on + strand at 783.357 kb on - strand, within phoA at 783.357 kb on - strand, within phoA at 783.388 kb on + strand, within phoA at 783.419 kb on - strand, within phoA at 783.428 kb on + strand at 783.466 kb on - strand, within phoA at 783.504 kb on + strand, within phoA at 783.523 kb on + strand at 783.523 kb on + strand, within phoA at 783.533 kb on + strand, within phoA at 783.533 kb on + strand, within phoA at 783.573 kb on - strand, within phoA at 783.607 kb on - strand, within phoA at 783.630 kb on + strand, within phoA at 783.638 kb on - strand, within phoA at 783.638 kb on - strand, within phoA at 783.638 kb on - strand, within phoA at 783.644 kb on + strand, within phoA at 783.644 kb on - strand, within phoA at 783.644 kb on - strand, within phoA at 783.652 kb on - strand, within phoA at 783.660 kb on - strand, within phoA at 783.685 kb on - strand, within phoA at 783.685 kb on - strand, within phoA at 783.709 kb on + strand, within phoA at 783.759 kb on + strand at 783.759 kb on + strand, within phoA at 783.767 kb on - strand, within phoA at 783.767 kb on - strand, within phoA at 783.777 kb on - strand at 783.784 kb on + strand, within phoA at 783.789 kb on + strand, within phoA at 783.792 kb on - strand, within phoA at 783.808 kb on + strand at 783.810 kb on + strand at 783.816 kb on - strand at 783.841 kb on + strand at 783.865 kb on - strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.893 kb on - strand at 783.893 kb on - strand at 783.926 kb on - strand at 783.954 kb on - strand at 783.959 kb on - strand at 784.046 kb on + strand, within gst1 at 784.065 kb on - strand, within gst1 at 784.069 kb on + strand, within gst1 at 784.135 kb on + strand, within gst1 at 784.148 kb on + strand, within gst1 at 784.148 kb on + strand, within gst1 at 784.156 kb on - strand, within gst1 at 784.170 kb on + strand, within gst1 at 784.209 kb on + strand, within gst1 at 784.231 kb on - strand, within gst1 at 784.250 kb on + strand, within gst1 at 784.255 kb on + strand, within gst1 at 784.270 kb on + strand, within gst1 at 784.326 kb on + strand, within gst1 at 784.331 kb on + strand, within gst1 at 784.334 kb on - strand, within gst1 at 784.419 kb on + strand, within gst1 at 784.432 kb on - strand, within gst1 at 784.501 kb on - strand, within gst1 at 784.541 kb on + strand, within gst1 at 784.574 kb on - strand, within gst1 at 784.627 kb on - strand, within gst1 at 784.661 kb on - strand, within gst1 at 784.758 kb on + strand at 784.776 kb on - strand at 784.800 kb on - strand at 784.801 kb on + strand at 784.807 kb on + strand at 784.843 kb on - strand at 784.847 kb on - strand at 784.866 kb on - strand at 784.866 kb on - strand at 784.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 782,027 - -0.6 782,027 - +2.3 782,027 - -2.6 782,027 - +1.5 782,036 + -0.1 782,036 + +0.8 782,041 + -2.4 782,041 + +1.3 782,041 + +0.3 782,044 - +0.9 782,049 - -0.7 782,059 - +2.0 782,084 + -1.1 782,094 + +0.2 782,094 + +1.8 782,112 - +2.9 782,112 - +3.9 782,140 - -0.7 782,166 + Synpcc7942_0786 0.10 +2.9 782,166 + Synpcc7942_0786 0.10 -0.1 782,174 - Synpcc7942_0786 0.11 -0.1 782,174 - Synpcc7942_0786 0.11 -0.4 782,212 + Synpcc7942_0786 0.16 -0.1 782,217 + Synpcc7942_0786 0.16 +1.1 782,242 - Synpcc7942_0786 0.19 -2.7 782,244 - Synpcc7942_0786 0.19 -0.8 782,252 - Synpcc7942_0786 0.20 +0.7 782,256 + Synpcc7942_0786 0.21 -1.4 782,271 + Synpcc7942_0786 0.22 +1.5 782,298 + Synpcc7942_0786 0.26 +1.7 782,305 + Synpcc7942_0786 0.26 +2.0 782,311 - Synpcc7942_0786 0.27 +0.2 782,313 - Synpcc7942_0786 0.27 +0.9 782,333 + Synpcc7942_0786 0.30 +1.3 782,364 - Synpcc7942_0786 0.33 +0.3 782,387 - Synpcc7942_0786 0.36 -0.9 782,387 - Synpcc7942_0786 0.36 +0.6 782,406 - Synpcc7942_0786 0.38 +0.1 782,433 - Synpcc7942_0786 0.41 +0.6 782,433 - Synpcc7942_0786 0.41 -0.1 782,433 - Synpcc7942_0786 0.41 -1.7 782,434 + Synpcc7942_0786 0.41 +2.2 782,602 - Synpcc7942_0786 0.61 -1.7 782,605 + Synpcc7942_0786 0.61 -0.7 782,618 + Synpcc7942_0786 0.63 +0.1 782,706 + Synpcc7942_0786 0.73 +0.2 782,792 + Synpcc7942_0786 0.83 -2.4 782,800 - Synpcc7942_0786 0.84 +1.7 782,800 - Synpcc7942_0786 0.84 +1.9 782,813 + Synpcc7942_0786 0.85 +0.7 782,837 + Synpcc7942_0786 0.88 -0.1 782,852 + Synpcc7942_0786 0.90 +1.1 782,852 + Synpcc7942_0786 0.90 -1.1 782,941 + +0.6 782,979 + -0.1 782,997 + +2.0 782,997 + +1.4 782,997 + -0.1 782,997 + -1.1 783,005 - -1.7 783,005 - +1.7 783,005 - +1.1 783,005 - +1.9 783,022 + -1.0 783,042 + -0.1 783,042 + -1.4 783,042 + +2.6 783,078 - +1.2 783,082 - -0.7 783,091 + -1.1 783,097 - phoA Synpcc7942_0787 0.10 +1.2 783,105 - phoA Synpcc7942_0787 0.11 +0.5 783,134 - phoA Synpcc7942_0787 0.14 -1.5 783,162 + phoA Synpcc7942_0787 0.18 -0.4 783,178 + phoA Synpcc7942_0787 0.19 +4.2 783,227 + phoA Synpcc7942_0787 0.25 +1.2 783,267 - phoA Synpcc7942_0787 0.30 +0.5 783,285 + phoA Synpcc7942_0787 0.32 +2.2 783,306 + phoA Synpcc7942_0787 0.34 +0.6 783,306 + phoA Synpcc7942_0787 0.34 +1.5 783,306 + phoA Synpcc7942_0787 0.34 +2.5 783,306 + phoA Synpcc7942_0787 0.34 +0.8 783,306 + phoA Synpcc7942_0787 0.34 +0.0 783,306 + phoA Synpcc7942_0787 0.34 +0.0 783,306 + phoA Synpcc7942_0787 0.34 +0.1 783,306 + phoA Synpcc7942_0787 0.34 +1.3 783,306 + phoA Synpcc7942_0787 0.34 -1.3 783,306 + phoA Synpcc7942_0787 0.34 +1.2 783,306 + phoA Synpcc7942_0787 0.34 -0.1 783,306 + phoA Synpcc7942_0787 0.34 +0.1 783,308 + phoA Synpcc7942_0787 0.34 +0.9 783,314 - phoA Synpcc7942_0787 0.35 +0.9 783,314 - phoA Synpcc7942_0787 0.35 +0.5 783,314 - phoA Synpcc7942_0787 0.35 -1.1 783,314 - phoA Synpcc7942_0787 0.35 +1.5 783,314 - phoA Synpcc7942_0787 0.35 +0.8 783,314 - phoA Synpcc7942_0787 0.35 +0.6 783,314 - phoA Synpcc7942_0787 0.35 +2.2 783,314 - phoA Synpcc7942_0787 0.35 +1.9 783,315 - phoA Synpcc7942_0787 0.35 +3.3 783,324 + phoA Synpcc7942_0787 0.36 +1.5 783,349 + -1.7 783,357 - phoA Synpcc7942_0787 0.40 +2.6 783,357 - phoA Synpcc7942_0787 0.40 +1.5 783,388 + phoA Synpcc7942_0787 0.43 +0.5 783,419 - phoA Synpcc7942_0787 0.47 +1.0 783,428 + -0.1 783,466 - phoA Synpcc7942_0787 0.52 +1.1 783,504 + phoA Synpcc7942_0787 0.57 +2.7 783,523 + +2.3 783,523 + phoA Synpcc7942_0787 0.59 -0.1 783,533 + phoA Synpcc7942_0787 0.60 +1.4 783,533 + phoA Synpcc7942_0787 0.60 -0.7 783,573 - phoA Synpcc7942_0787 0.64 +2.5 783,607 - phoA Synpcc7942_0787 0.68 +1.5 783,630 + phoA Synpcc7942_0787 0.71 +1.9 783,638 - phoA Synpcc7942_0787 0.72 +0.7 783,638 - phoA Synpcc7942_0787 0.72 +0.0 783,638 - phoA Synpcc7942_0787 0.72 +1.5 783,644 + phoA Synpcc7942_0787 0.72 +0.0 783,644 - phoA Synpcc7942_0787 0.72 +0.4 783,644 - phoA Synpcc7942_0787 0.72 +0.9 783,652 - phoA Synpcc7942_0787 0.73 +0.3 783,660 - phoA Synpcc7942_0787 0.74 -1.7 783,685 - phoA Synpcc7942_0787 0.77 +1.2 783,685 - phoA Synpcc7942_0787 0.77 -0.8 783,709 + phoA Synpcc7942_0787 0.80 -0.6 783,759 + -1.7 783,759 + phoA Synpcc7942_0787 0.86 +1.1 783,767 - phoA Synpcc7942_0787 0.86 +1.5 783,767 - phoA Synpcc7942_0787 0.86 +1.2 783,777 - -0.1 783,784 + phoA Synpcc7942_0787 0.88 +2.2 783,789 + phoA Synpcc7942_0787 0.89 +1.5 783,792 - phoA Synpcc7942_0787 0.89 +2.3 783,808 + +1.4 783,810 + -0.6 783,816 - -0.2 783,841 + +1.5 783,865 - +0.6 783,885 + +0.3 783,885 + -0.1 783,885 + -0.7 783,885 + +0.6 783,893 - +1.8 783,893 - +0.9 783,926 - +0.6 783,954 - +0.9 783,959 - -0.1 784,046 + gst1 Synpcc7942_0788 0.12 -2.4 784,065 - gst1 Synpcc7942_0788 0.14 -3.3 784,069 + gst1 Synpcc7942_0788 0.14 -2.9 784,135 + gst1 Synpcc7942_0788 0.23 -3.4 784,148 + gst1 Synpcc7942_0788 0.24 -2.3 784,148 + gst1 Synpcc7942_0788 0.24 -2.9 784,156 - gst1 Synpcc7942_0788 0.25 -2.7 784,170 + gst1 Synpcc7942_0788 0.27 -2.7 784,209 + gst1 Synpcc7942_0788 0.32 -1.1 784,231 - gst1 Synpcc7942_0788 0.35 -3.1 784,250 + gst1 Synpcc7942_0788 0.37 +1.0 784,255 + gst1 Synpcc7942_0788 0.38 -2.4 784,270 + gst1 Synpcc7942_0788 0.40 -4.9 784,326 + gst1 Synpcc7942_0788 0.47 -3.6 784,331 + gst1 Synpcc7942_0788 0.47 -2.7 784,334 - gst1 Synpcc7942_0788 0.48 -3.1 784,419 + gst1 Synpcc7942_0788 0.58 -5.1 784,432 - gst1 Synpcc7942_0788 0.60 -3.6 784,501 - gst1 Synpcc7942_0788 0.69 -3.1 784,541 + gst1 Synpcc7942_0788 0.74 -4.0 784,574 - gst1 Synpcc7942_0788 0.78 -3.6 784,627 - gst1 Synpcc7942_0788 0.85 -1.9 784,661 - gst1 Synpcc7942_0788 0.89 -2.4 784,758 + -0.1 784,776 - -2.4 784,800 - +0.4 784,801 + -1.7 784,807 + +2.2 784,843 - +0.6 784,847 - +2.0 784,866 - +0.3 784,866 - -2.1 784,875 + -0.5
Or see this region's nucleotide sequence