Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0747 and Synpcc7942_0748 overlap by 4 nucleotides Synpcc7942_0748 and Synpcc7942_0749 are separated by 3 nucleotides Synpcc7942_0749 and Synpcc7942_0750 are separated by 123 nucleotides
Synpcc7942_0747: Synpcc7942_0747 - hypothetical protein, at 741,396 to 742,820
_0747
Synpcc7942_0748: Synpcc7942_0748 - Phage major tail tube protein, at 742,817 to 743,320
_0748
Synpcc7942_0749: Synpcc7942_0749 - hypothetical protein, at 743,324 to 743,614
_0749
Synpcc7942_0750: Synpcc7942_0750 - Phage tail tape measure protein TP901, core region, at 743,738 to 746,590
_0750
Position (kb) 743
744 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 742.350 kb on + strand, within Synpcc7942_0747 at 742.377 kb on + strand, within Synpcc7942_0747 at 742.378 kb on - strand, within Synpcc7942_0747 at 742.438 kb on + strand, within Synpcc7942_0747 at 742.438 kb on + strand, within Synpcc7942_0747 at 742.453 kb on - strand, within Synpcc7942_0747 at 742.478 kb on + strand at 742.486 kb on + strand, within Synpcc7942_0747 at 742.509 kb on + strand, within Synpcc7942_0747 at 742.544 kb on + strand, within Synpcc7942_0747 at 742.544 kb on + strand, within Synpcc7942_0747 at 742.544 kb on + strand, within Synpcc7942_0747 at 742.544 kb on + strand, within Synpcc7942_0747 at 742.544 kb on + strand, within Synpcc7942_0747 at 742.544 kb on + strand, within Synpcc7942_0747 at 742.547 kb on + strand at 742.547 kb on - strand, within Synpcc7942_0747 at 742.552 kb on - strand, within Synpcc7942_0747 at 742.552 kb on - strand, within Synpcc7942_0747 at 742.552 kb on - strand, within Synpcc7942_0747 at 742.552 kb on - strand, within Synpcc7942_0747 at 742.554 kb on + strand, within Synpcc7942_0747 at 742.554 kb on - strand, within Synpcc7942_0747 at 742.610 kb on - strand, within Synpcc7942_0747 at 742.610 kb on - strand, within Synpcc7942_0747 at 742.625 kb on - strand, within Synpcc7942_0747 at 742.655 kb on + strand, within Synpcc7942_0747 at 742.663 kb on - strand, within Synpcc7942_0747 at 742.663 kb on - strand, within Synpcc7942_0747 at 742.671 kb on + strand, within Synpcc7942_0747 at 742.694 kb on + strand at 742.698 kb on - strand at 742.698 kb on - strand at 742.699 kb on - strand at 742.728 kb on + strand at 742.733 kb on + strand at 742.736 kb on - strand at 742.736 kb on - strand at 742.741 kb on - strand at 742.772 kb on + strand at 742.772 kb on + strand at 742.773 kb on + strand at 742.778 kb on - strand at 742.780 kb on - strand at 742.780 kb on - strand at 742.781 kb on - strand at 742.788 kb on + strand at 742.794 kb on - strand at 742.796 kb on + strand at 742.853 kb on + strand at 742.886 kb on - strand, within Synpcc7942_0748 at 742.888 kb on + strand, within Synpcc7942_0748 at 742.888 kb on + strand, within Synpcc7942_0748 at 742.895 kb on - strand, within Synpcc7942_0748 at 742.895 kb on - strand, within Synpcc7942_0748 at 742.895 kb on - strand, within Synpcc7942_0748 at 742.895 kb on - strand, within Synpcc7942_0748 at 742.897 kb on + strand, within Synpcc7942_0748 at 742.897 kb on + strand, within Synpcc7942_0748 at 742.915 kb on + strand, within Synpcc7942_0748 at 742.918 kb on - strand, within Synpcc7942_0748 at 742.922 kb on + strand, within Synpcc7942_0748 at 742.959 kb on - strand, within Synpcc7942_0748 at 742.970 kb on - strand, within Synpcc7942_0748 at 742.970 kb on - strand, within Synpcc7942_0748 at 742.970 kb on - strand, within Synpcc7942_0748 at 742.975 kb on - strand at 742.981 kb on - strand, within Synpcc7942_0748 at 742.989 kb on + strand, within Synpcc7942_0748 at 742.989 kb on + strand, within Synpcc7942_0748 at 742.997 kb on - strand, within Synpcc7942_0748 at 742.997 kb on - strand, within Synpcc7942_0748 at 743.007 kb on - strand, within Synpcc7942_0748 at 743.010 kb on + strand, within Synpcc7942_0748 at 743.018 kb on - strand, within Synpcc7942_0748 at 743.026 kb on + strand, within Synpcc7942_0748 at 743.026 kb on + strand, within Synpcc7942_0748 at 743.028 kb on - strand at 743.034 kb on - strand, within Synpcc7942_0748 at 743.059 kb on + strand, within Synpcc7942_0748 at 743.075 kb on + strand, within Synpcc7942_0748 at 743.104 kb on + strand, within Synpcc7942_0748 at 743.131 kb on + strand, within Synpcc7942_0748 at 743.131 kb on + strand, within Synpcc7942_0748 at 743.135 kb on - strand, within Synpcc7942_0748 at 743.150 kb on + strand, within Synpcc7942_0748 at 743.183 kb on + strand, within Synpcc7942_0748 at 743.183 kb on - strand, within Synpcc7942_0748 at 743.183 kb on - strand, within Synpcc7942_0748 at 743.185 kb on + strand, within Synpcc7942_0748 at 743.193 kb on - strand, within Synpcc7942_0748 at 743.193 kb on - strand, within Synpcc7942_0748 at 743.193 kb on - strand, within Synpcc7942_0748 at 743.226 kb on + strand, within Synpcc7942_0748 at 743.226 kb on + strand at 743.226 kb on + strand, within Synpcc7942_0748 at 743.226 kb on + strand, within Synpcc7942_0748 at 743.234 kb on - strand, within Synpcc7942_0748 at 743.234 kb on - strand, within Synpcc7942_0748 at 743.280 kb on - strand at 743.285 kb on - strand at 743.285 kb on - strand at 743.290 kb on - strand at 743.295 kb on - strand at 743.295 kb on - strand at 743.295 kb on - strand at 743.295 kb on - strand at 743.295 kb on - strand at 743.327 kb on + strand at 743.449 kb on + strand, within Synpcc7942_0749 at 743.449 kb on + strand, within Synpcc7942_0749 at 743.457 kb on - strand, within Synpcc7942_0749 at 743.457 kb on - strand, within Synpcc7942_0749 at 743.457 kb on - strand, within Synpcc7942_0749 at 743.463 kb on + strand at 743.471 kb on - strand, within Synpcc7942_0749 at 743.471 kb on - strand, within Synpcc7942_0749 at 743.471 kb on - strand, within Synpcc7942_0749 at 743.471 kb on - strand, within Synpcc7942_0749 at 743.471 kb on - strand, within Synpcc7942_0749 at 743.495 kb on - strand, within Synpcc7942_0749 at 743.501 kb on + strand, within Synpcc7942_0749 at 743.502 kb on + strand, within Synpcc7942_0749 at 743.516 kb on - strand, within Synpcc7942_0749 at 743.517 kb on + strand, within Synpcc7942_0749 at 743.535 kb on - strand, within Synpcc7942_0749 at 743.563 kb on + strand, within Synpcc7942_0749 at 743.563 kb on + strand, within Synpcc7942_0749 at 743.563 kb on + strand, within Synpcc7942_0749 at 743.563 kb on + strand, within Synpcc7942_0749 at 743.563 kb on + strand, within Synpcc7942_0749 at 743.571 kb on - strand, within Synpcc7942_0749 at 743.571 kb on - strand, within Synpcc7942_0749 at 743.571 kb on - strand, within Synpcc7942_0749 at 743.596 kb on - strand at 743.622 kb on + strand at 743.733 kb on - strand at 743.769 kb on + strand at 743.781 kb on + strand at 743.807 kb on - strand at 743.816 kb on + strand at 743.816 kb on + strand at 743.822 kb on + strand at 743.824 kb on - strand at 743.824 kb on - strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.839 kb on + strand at 743.839 kb on + strand at 743.847 kb on - strand at 743.848 kb on + strand at 743.848 kb on + strand at 743.856 kb on - strand at 743.866 kb on - strand at 743.868 kb on - strand at 743.927 kb on + strand at 743.927 kb on + strand at 743.927 kb on + strand at 743.927 kb on + strand at 743.935 kb on - strand at 743.997 kb on + strand at 743.997 kb on + strand at 744.013 kb on + strand at 744.014 kb on + strand at 744.019 kb on + strand at 744.021 kb on - strand at 744.108 kb on - strand, within Synpcc7942_0750 at 744.110 kb on + strand, within Synpcc7942_0750 at 744.110 kb on + strand, within Synpcc7942_0750 at 744.118 kb on - strand, within Synpcc7942_0750 at 744.125 kb on + strand, within Synpcc7942_0750 at 744.142 kb on - strand, within Synpcc7942_0750 at 744.145 kb on + strand, within Synpcc7942_0750 at 744.152 kb on - strand, within Synpcc7942_0750 at 744.153 kb on + strand, within Synpcc7942_0750 at 744.153 kb on - strand, within Synpcc7942_0750 at 744.180 kb on + strand, within Synpcc7942_0750 at 744.188 kb on - strand, within Synpcc7942_0750 at 744.210 kb on + strand, within Synpcc7942_0750 at 744.234 kb on + strand, within Synpcc7942_0750 at 744.264 kb on - strand, within Synpcc7942_0750 at 744.282 kb on - strand, within Synpcc7942_0750 at 744.282 kb on - strand, within Synpcc7942_0750 at 744.288 kb on + strand, within Synpcc7942_0750 at 744.310 kb on + strand, within Synpcc7942_0750 at 744.312 kb on + strand, within Synpcc7942_0750 at 744.317 kb on + strand, within Synpcc7942_0750 at 744.374 kb on - strand, within Synpcc7942_0750 at 744.418 kb on - strand, within Synpcc7942_0750 at 744.459 kb on - strand, within Synpcc7942_0750 at 744.467 kb on - strand, within Synpcc7942_0750 at 744.482 kb on - strand, within Synpcc7942_0750 at 744.484 kb on + strand, within Synpcc7942_0750 at 744.515 kb on - strand, within Synpcc7942_0750 at 744.556 kb on + strand, within Synpcc7942_0750 at 744.563 kb on - strand, within Synpcc7942_0750 at 744.578 kb on + strand, within Synpcc7942_0750 at 744.578 kb on + strand, within Synpcc7942_0750 at 744.585 kb on - strand, within Synpcc7942_0750 at 744.587 kb on - strand, within Synpcc7942_0750 at 744.587 kb on - strand, within Synpcc7942_0750 at 744.587 kb on - strand, within Synpcc7942_0750 at 744.612 kb on + strand, within Synpcc7942_0750
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 742,350 + Synpcc7942_0747 0.67 +1.1 742,377 + Synpcc7942_0747 0.69 -2.9 742,378 - Synpcc7942_0747 0.69 -1.3 742,438 + Synpcc7942_0747 0.73 +1.2 742,438 + Synpcc7942_0747 0.73 -1.1 742,453 - Synpcc7942_0747 0.74 +1.9 742,478 + -0.1 742,486 + Synpcc7942_0747 0.76 +1.3 742,509 + Synpcc7942_0747 0.78 +0.6 742,544 + Synpcc7942_0747 0.81 -0.1 742,544 + Synpcc7942_0747 0.81 -2.9 742,544 + Synpcc7942_0747 0.81 -1.1 742,544 + Synpcc7942_0747 0.81 -0.6 742,544 + Synpcc7942_0747 0.81 +1.3 742,544 + Synpcc7942_0747 0.81 +0.4 742,547 + -0.1 742,547 - Synpcc7942_0747 0.81 +0.7 742,552 - Synpcc7942_0747 0.81 +0.7 742,552 - Synpcc7942_0747 0.81 +0.5 742,552 - Synpcc7942_0747 0.81 -0.3 742,552 - Synpcc7942_0747 0.81 +1.9 742,554 + Synpcc7942_0747 0.81 -1.1 742,554 - Synpcc7942_0747 0.81 -0.1 742,610 - Synpcc7942_0747 0.85 +0.6 742,610 - Synpcc7942_0747 0.85 -0.5 742,625 - Synpcc7942_0747 0.86 -0.9 742,655 + Synpcc7942_0747 0.88 -1.9 742,663 - Synpcc7942_0747 0.89 +0.6 742,663 - Synpcc7942_0747 0.89 -3.8 742,671 + Synpcc7942_0747 0.89 +1.4 742,694 + +0.0 742,698 - +0.4 742,698 - +3.2 742,699 - +0.5 742,728 + -1.7 742,733 + +0.3 742,736 - +1.1 742,736 - +0.5 742,741 - -2.1 742,772 + -0.3 742,772 + -0.9 742,773 + -0.1 742,778 - +0.1 742,780 - -0.1 742,780 - +2.0 742,781 - +0.9 742,788 + -0.1 742,794 - +0.5 742,796 + -1.1 742,853 + -0.5 742,886 - Synpcc7942_0748 0.14 +2.6 742,888 + Synpcc7942_0748 0.14 +2.5 742,888 + Synpcc7942_0748 0.14 +0.3 742,895 - Synpcc7942_0748 0.15 +0.0 742,895 - Synpcc7942_0748 0.15 -0.4 742,895 - Synpcc7942_0748 0.15 -0.9 742,895 - Synpcc7942_0748 0.15 -0.6 742,897 + Synpcc7942_0748 0.16 -3.1 742,897 + Synpcc7942_0748 0.16 -1.7 742,915 + Synpcc7942_0748 0.19 +0.6 742,918 - Synpcc7942_0748 0.20 +3.5 742,922 + Synpcc7942_0748 0.21 +0.8 742,959 - Synpcc7942_0748 0.28 -2.3 742,970 - Synpcc7942_0748 0.30 -0.2 742,970 - Synpcc7942_0748 0.30 -1.2 742,970 - Synpcc7942_0748 0.30 -1.7 742,975 - +0.9 742,981 - Synpcc7942_0748 0.33 -2.1 742,989 + Synpcc7942_0748 0.34 -0.1 742,989 + Synpcc7942_0748 0.34 -0.2 742,997 - Synpcc7942_0748 0.36 -2.7 742,997 - Synpcc7942_0748 0.36 +0.9 743,007 - Synpcc7942_0748 0.38 -1.7 743,010 + Synpcc7942_0748 0.38 -1.5 743,018 - Synpcc7942_0748 0.40 -0.8 743,026 + Synpcc7942_0748 0.41 -0.5 743,026 + Synpcc7942_0748 0.41 -2.0 743,028 - -0.1 743,034 - Synpcc7942_0748 0.43 +0.8 743,059 + Synpcc7942_0748 0.48 +0.5 743,075 + Synpcc7942_0748 0.51 -0.4 743,104 + Synpcc7942_0748 0.57 -1.1 743,131 + Synpcc7942_0748 0.62 +0.2 743,131 + Synpcc7942_0748 0.62 -2.7 743,135 - Synpcc7942_0748 0.63 +0.4 743,150 + Synpcc7942_0748 0.66 -0.7 743,183 + Synpcc7942_0748 0.73 -0.1 743,183 - Synpcc7942_0748 0.73 +0.6 743,183 - Synpcc7942_0748 0.73 +0.1 743,185 + Synpcc7942_0748 0.73 -1.7 743,193 - Synpcc7942_0748 0.75 -0.4 743,193 - Synpcc7942_0748 0.75 +0.1 743,193 - Synpcc7942_0748 0.75 +1.5 743,226 + Synpcc7942_0748 0.81 -2.1 743,226 + -2.1 743,226 + Synpcc7942_0748 0.81 +1.6 743,226 + Synpcc7942_0748 0.81 -0.7 743,234 - Synpcc7942_0748 0.83 +1.1 743,234 - Synpcc7942_0748 0.83 +1.1 743,280 - -2.1 743,285 - -1.7 743,285 - +0.9 743,290 - -2.3 743,295 - +1.1 743,295 - -0.1 743,295 - -1.7 743,295 - -0.7 743,295 - -2.4 743,327 + +0.4 743,449 + Synpcc7942_0749 0.43 +0.9 743,449 + Synpcc7942_0749 0.43 -2.4 743,457 - Synpcc7942_0749 0.46 +0.1 743,457 - Synpcc7942_0749 0.46 -0.7 743,457 - Synpcc7942_0749 0.46 +1.1 743,463 + -2.1 743,471 - Synpcc7942_0749 0.51 -1.7 743,471 - Synpcc7942_0749 0.51 -2.1 743,471 - Synpcc7942_0749 0.51 +2.1 743,471 - Synpcc7942_0749 0.51 +0.6 743,471 - Synpcc7942_0749 0.51 +0.6 743,495 - Synpcc7942_0749 0.59 +0.3 743,501 + Synpcc7942_0749 0.61 -0.7 743,502 + Synpcc7942_0749 0.61 +0.5 743,516 - Synpcc7942_0749 0.66 +1.4 743,517 + Synpcc7942_0749 0.66 -2.7 743,535 - Synpcc7942_0749 0.73 +1.5 743,563 + Synpcc7942_0749 0.82 +1.2 743,563 + Synpcc7942_0749 0.82 +1.7 743,563 + Synpcc7942_0749 0.82 +0.9 743,563 + Synpcc7942_0749 0.82 +1.4 743,563 + Synpcc7942_0749 0.82 +1.7 743,571 - Synpcc7942_0749 0.85 +1.9 743,571 - Synpcc7942_0749 0.85 +0.5 743,571 - Synpcc7942_0749 0.85 +0.8 743,596 - -2.1 743,622 + -2.4 743,733 - +1.1 743,769 + -1.4 743,781 + -0.1 743,807 - +1.4 743,816 + -0.1 743,816 + -0.8 743,822 + +0.9 743,824 - +1.5 743,824 - -0.3 743,827 + +0.3 743,827 + +1.0 743,827 + +0.0 743,835 - -0.5 743,835 - +0.2 743,835 - -2.4 743,835 - -2.1 743,835 - -0.6 743,839 + +0.1 743,839 + -1.1 743,847 - -0.0 743,848 + +1.5 743,848 + -0.1 743,856 - +1.2 743,866 - +0.6 743,868 - -1.7 743,927 + +0.8 743,927 + +1.2 743,927 + +0.9 743,927 + +0.1 743,935 - -0.6 743,997 + -0.9 743,997 + -0.9 744,013 + -2.9 744,014 + -1.7 744,019 + +0.8 744,021 - +1.2 744,108 - Synpcc7942_0750 0.13 +0.3 744,110 + Synpcc7942_0750 0.13 +0.5 744,110 + Synpcc7942_0750 0.13 -0.3 744,118 - Synpcc7942_0750 0.13 +0.3 744,125 + Synpcc7942_0750 0.14 +0.6 744,142 - Synpcc7942_0750 0.14 +1.4 744,145 + Synpcc7942_0750 0.14 -0.7 744,152 - Synpcc7942_0750 0.15 +1.2 744,153 + Synpcc7942_0750 0.15 -0.4 744,153 - Synpcc7942_0750 0.15 +0.9 744,180 + Synpcc7942_0750 0.15 +2.3 744,188 - Synpcc7942_0750 0.16 +0.6 744,210 + Synpcc7942_0750 0.17 +1.1 744,234 + Synpcc7942_0750 0.17 -1.1 744,264 - Synpcc7942_0750 0.18 +0.6 744,282 - Synpcc7942_0750 0.19 +0.9 744,282 - Synpcc7942_0750 0.19 -1.5 744,288 + Synpcc7942_0750 0.19 -0.1 744,310 + Synpcc7942_0750 0.20 +0.7 744,312 + Synpcc7942_0750 0.20 -1.1 744,317 + Synpcc7942_0750 0.20 -3.1 744,374 - Synpcc7942_0750 0.22 -1.7 744,418 - Synpcc7942_0750 0.24 -1.4 744,459 - Synpcc7942_0750 0.25 +0.3 744,467 - Synpcc7942_0750 0.26 +0.7 744,482 - Synpcc7942_0750 0.26 -0.8 744,484 + Synpcc7942_0750 0.26 -0.9 744,515 - Synpcc7942_0750 0.27 +0.5 744,556 + Synpcc7942_0750 0.29 -1.0 744,563 - Synpcc7942_0750 0.29 +0.3 744,578 + Synpcc7942_0750 0.29 +0.3 744,578 + Synpcc7942_0750 0.29 -0.2 744,585 - Synpcc7942_0750 0.30 -2.4 744,587 - Synpcc7942_0750 0.30 +0.1 744,587 - Synpcc7942_0750 0.30 -0.7 744,587 - Synpcc7942_0750 0.30 -1.1 744,612 + Synpcc7942_0750 0.31 -0.4
Or see this region's nucleotide sequence