Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0718 and Synpcc7942_0719 overlap by 4 nucleotides Synpcc7942_0719 and Synpcc7942_0720 are separated by 219 nucleotides Synpcc7942_0720 and Synpcc7942_0721 are separated by 202 nucleotides Synpcc7942_0721 and Synpcc7942_0722 are separated by 60 nucleotides
Synpcc7942_0718: Synpcc7942_0718 - hypothetical protein, at 713,678 to 714,331
_0718
Synpcc7942_0719: Synpcc7942_0719 - hypothetical protein, at 714,328 to 714,831
_0719
Synpcc7942_0720: Synpcc7942_0720 - hypothetical protein, at 715,051 to 715,389
_0720
Synpcc7942_0721: Synpcc7942_0721 - hypothetical protein, at 715,592 to 715,882
_0721
Synpcc7942_0722: Synpcc7942_0722 - hypothetical protein, at 715,943 to 717,025
_0722
Position (kb) 715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 714.058 kb on + strand, within Synpcc7942_0718 at 714.060 kb on - strand, within Synpcc7942_0718 at 714.070 kb on + strand, within Synpcc7942_0718 at 714.075 kb on + strand, within Synpcc7942_0718 at 714.075 kb on + strand, within Synpcc7942_0718 at 714.078 kb on - strand, within Synpcc7942_0718 at 714.080 kb on + strand, within Synpcc7942_0718 at 714.083 kb on - strand, within Synpcc7942_0718 at 714.083 kb on - strand, within Synpcc7942_0718 at 714.104 kb on - strand, within Synpcc7942_0718 at 714.104 kb on - strand, within Synpcc7942_0718 at 714.137 kb on - strand, within Synpcc7942_0718 at 714.143 kb on - strand, within Synpcc7942_0718 at 714.144 kb on + strand, within Synpcc7942_0718 at 714.145 kb on - strand, within Synpcc7942_0718 at 714.163 kb on + strand, within Synpcc7942_0718 at 714.167 kb on + strand, within Synpcc7942_0718 at 714.180 kb on - strand, within Synpcc7942_0718 at 714.182 kb on + strand, within Synpcc7942_0718 at 714.182 kb on + strand, within Synpcc7942_0718 at 714.205 kb on + strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.221 kb on - strand, within Synpcc7942_0718 at 714.282 kb on - strand at 714.309 kb on + strand at 714.335 kb on - strand at 714.367 kb on - strand at 714.381 kb on - strand, within Synpcc7942_0719 at 714.391 kb on - strand, within Synpcc7942_0719 at 714.456 kb on + strand, within Synpcc7942_0719 at 714.469 kb on - strand, within Synpcc7942_0719 at 714.506 kb on - strand, within Synpcc7942_0719 at 714.516 kb on - strand, within Synpcc7942_0719 at 714.516 kb on - strand, within Synpcc7942_0719 at 714.519 kb on + strand, within Synpcc7942_0719 at 714.519 kb on + strand, within Synpcc7942_0719 at 714.529 kb on + strand, within Synpcc7942_0719 at 714.529 kb on + strand, within Synpcc7942_0719 at 714.537 kb on - strand, within Synpcc7942_0719 at 714.539 kb on - strand at 714.581 kb on - strand, within Synpcc7942_0719 at 714.671 kb on + strand, within Synpcc7942_0719 at 714.718 kb on + strand, within Synpcc7942_0719 at 714.746 kb on + strand, within Synpcc7942_0719 at 714.762 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.773 kb on + strand, within Synpcc7942_0719 at 714.778 kb on + strand, within Synpcc7942_0719 at 714.781 kb on - strand at 714.781 kb on - strand at 714.781 kb on - strand at 714.783 kb on + strand at 714.790 kb on + strand at 714.793 kb on - strand at 714.798 kb on - strand at 714.803 kb on - strand at 714.831 kb on + strand at 714.831 kb on + strand at 714.839 kb on - strand at 714.839 kb on - strand at 714.841 kb on + strand at 714.844 kb on + strand at 714.849 kb on + strand at 714.880 kb on - strand at 714.880 kb on - strand at 714.882 kb on + strand at 714.889 kb on - strand at 714.904 kb on + strand at 714.910 kb on + strand at 714.912 kb on - strand at 714.912 kb on - strand at 714.915 kb on + strand at 714.918 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.925 kb on + strand at 714.930 kb on + strand at 714.933 kb on - strand at 714.938 kb on - strand at 714.948 kb on - strand at 714.977 kb on - strand at 714.979 kb on - strand at 714.995 kb on - strand at 715.006 kb on + strand at 715.007 kb on + strand at 715.018 kb on + strand at 715.040 kb on - strand at 715.056 kb on + strand at 715.064 kb on - strand at 715.064 kb on - strand at 715.068 kb on + strand at 715.125 kb on + strand, within Synpcc7942_0720 at 715.194 kb on + strand, within Synpcc7942_0720 at 715.196 kb on - strand at 715.202 kb on - strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.274 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.384 kb on + strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.401 kb on + strand at 715.401 kb on + strand at 715.431 kb on + strand at 715.442 kb on + strand at 715.442 kb on + strand at 715.449 kb on + strand at 715.449 kb on + strand at 715.457 kb on - strand at 715.464 kb on + strand at 715.464 kb on + strand at 715.467 kb on - strand at 715.470 kb on + strand at 715.472 kb on - strand at 715.495 kb on - strand at 715.544 kb on - strand at 715.571 kb on + strand at 715.598 kb on - strand at 715.603 kb on - strand at 715.607 kb on + strand at 715.607 kb on + strand at 715.615 kb on - strand at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.635 kb on + strand, within Synpcc7942_0721 at 715.668 kb on + strand, within Synpcc7942_0721 at 715.679 kb on - strand, within Synpcc7942_0721 at 715.681 kb on - strand, within Synpcc7942_0721 at 715.686 kb on - strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.723 kb on + strand, within Synpcc7942_0721 at 715.725 kb on - strand, within Synpcc7942_0721 at 715.801 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.815 kb on + strand, within Synpcc7942_0721 at 715.829 kb on + strand, within Synpcc7942_0721 at 715.943 kb on - strand at 715.943 kb on - strand at 715.943 kb on - strand at 715.969 kb on + strand at 715.999 kb on + strand at 716.004 kb on + strand at 716.004 kb on + strand at 716.011 kb on - strand at 716.071 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.101 kb on + strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.116 kb on + strand, within Synpcc7942_0722 at 716.124 kb on - strand, within Synpcc7942_0722 at 716.149 kb on - strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.159 kb on - strand, within Synpcc7942_0722 at 716.184 kb on - strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.221 kb on + strand, within Synpcc7942_0722 at 716.230 kb on + strand, within Synpcc7942_0722 at 716.236 kb on + strand, within Synpcc7942_0722 at 716.284 kb on + strand, within Synpcc7942_0722 at 716.289 kb on + strand at 716.301 kb on + strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.341 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.358 kb on + strand, within Synpcc7942_0722 at 716.374 kb on - strand, within Synpcc7942_0722 at 716.378 kb on + strand, within Synpcc7942_0722 at 716.378 kb on - strand, within Synpcc7942_0722 at 716.386 kb on - strand, within Synpcc7942_0722 at 716.387 kb on - strand, within Synpcc7942_0722
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 714,058 + Synpcc7942_0718 0.58 -2.7 714,060 - Synpcc7942_0718 0.58 -0.4 714,070 + Synpcc7942_0718 0.60 +0.4 714,075 + Synpcc7942_0718 0.61 -1.7 714,075 + Synpcc7942_0718 0.61 +1.5 714,078 - Synpcc7942_0718 0.61 +1.5 714,080 + Synpcc7942_0718 0.61 +1.3 714,083 - Synpcc7942_0718 0.62 -0.0 714,083 - Synpcc7942_0718 0.62 +1.1 714,104 - Synpcc7942_0718 0.65 -0.5 714,104 - Synpcc7942_0718 0.65 -1.1 714,137 - Synpcc7942_0718 0.70 +2.2 714,143 - Synpcc7942_0718 0.71 +1.4 714,144 + Synpcc7942_0718 0.71 -2.7 714,145 - Synpcc7942_0718 0.71 +2.2 714,163 + Synpcc7942_0718 0.74 +0.7 714,167 + Synpcc7942_0718 0.75 +0.5 714,180 - Synpcc7942_0718 0.77 -1.1 714,182 + Synpcc7942_0718 0.77 +0.5 714,182 + Synpcc7942_0718 0.77 +0.4 714,205 + Synpcc7942_0718 0.81 +1.9 714,213 - Synpcc7942_0718 0.82 -2.7 714,213 - Synpcc7942_0718 0.82 +0.7 714,213 - Synpcc7942_0718 0.82 +0.0 714,221 - Synpcc7942_0718 0.83 +1.8 714,282 - -0.2 714,309 + +0.5 714,335 - -0.6 714,367 - -0.7 714,381 - Synpcc7942_0719 0.11 -2.0 714,391 - Synpcc7942_0719 0.12 +0.9 714,456 + Synpcc7942_0719 0.25 -0.1 714,469 - Synpcc7942_0719 0.28 +3.1 714,506 - Synpcc7942_0719 0.35 -2.9 714,516 - Synpcc7942_0719 0.37 -2.1 714,516 - Synpcc7942_0719 0.37 +0.4 714,519 + Synpcc7942_0719 0.38 +0.8 714,519 + Synpcc7942_0719 0.38 +0.7 714,529 + Synpcc7942_0719 0.40 +0.4 714,529 + Synpcc7942_0719 0.40 -0.2 714,537 - Synpcc7942_0719 0.41 +0.1 714,539 - +0.3 714,581 - Synpcc7942_0719 0.50 +0.7 714,671 + Synpcc7942_0719 0.68 -1.4 714,718 + Synpcc7942_0719 0.77 +0.0 714,746 + Synpcc7942_0719 0.83 -0.3 714,762 + Synpcc7942_0719 0.86 -0.5 714,763 + Synpcc7942_0719 0.86 -0.1 714,763 + Synpcc7942_0719 0.86 +1.0 714,771 - Synpcc7942_0719 0.88 -0.7 714,771 - Synpcc7942_0719 0.88 -0.5 714,773 + Synpcc7942_0719 0.88 +2.2 714,778 + Synpcc7942_0719 0.89 +0.5 714,781 - -1.4 714,781 - +0.6 714,781 - -2.1 714,783 + +0.1 714,790 + -0.8 714,793 - +1.7 714,798 - +0.5 714,803 - +0.4 714,831 + +4.7 714,831 + -1.1 714,839 - +0.4 714,839 - -1.2 714,841 + +0.9 714,844 + +0.7 714,849 + -2.1 714,880 - -1.1 714,880 - +0.9 714,882 + -0.1 714,889 - +0.4 714,904 + +1.5 714,910 + -2.7 714,912 - +2.5 714,912 - -2.4 714,915 + +0.8 714,918 - +1.7 714,923 - -0.1 714,923 - +2.5 714,923 - -0.1 714,923 - -0.1 714,925 + -1.7 714,930 + -0.4 714,933 - +1.7 714,938 - +0.5 714,948 - +2.9 714,977 - -0.9 714,979 - -1.2 714,995 - +0.1 715,006 + -1.1 715,007 + -1.1 715,018 + -0.1 715,040 - -0.8 715,056 + -0.3 715,064 - +0.3 715,064 - -0.7 715,068 + -0.1 715,125 + Synpcc7942_0720 0.22 +0.5 715,194 + Synpcc7942_0720 0.42 -1.1 715,196 - +1.2 715,202 - Synpcc7942_0720 0.45 +0.2 715,257 + Synpcc7942_0720 0.61 +2.7 715,257 + Synpcc7942_0720 0.61 +1.3 715,274 + Synpcc7942_0720 0.66 +0.5 715,284 + Synpcc7942_0720 0.69 +0.9 715,284 + Synpcc7942_0720 0.69 -1.2 715,384 + +2.2 715,392 - -2.1 715,392 - +0.9 715,392 - -0.1 715,392 - -0.5 715,401 + +0.6 715,401 + -0.2 715,431 + +0.2 715,442 + +2.3 715,442 + +1.2 715,449 + -1.3 715,449 + +0.2 715,457 - -2.7 715,464 + -0.4 715,464 + +0.5 715,467 - +0.7 715,470 + +0.5 715,472 - -2.2 715,495 - -1.1 715,544 - +1.5 715,571 + +0.1 715,598 - +0.7 715,603 - +2.4 715,607 + +0.9 715,607 + -2.7 715,615 - -1.1 715,630 - Synpcc7942_0721 0.13 +1.8 715,630 - Synpcc7942_0721 0.13 -0.7 715,630 - Synpcc7942_0721 0.13 +0.4 715,635 + Synpcc7942_0721 0.15 -1.1 715,668 + Synpcc7942_0721 0.26 -1.5 715,679 - Synpcc7942_0721 0.30 -1.1 715,681 - Synpcc7942_0721 0.31 +0.8 715,686 - Synpcc7942_0721 0.32 +0.7 715,689 + Synpcc7942_0721 0.33 -0.1 715,689 + Synpcc7942_0721 0.33 +1.8 715,723 + Synpcc7942_0721 0.45 +3.9 715,725 - Synpcc7942_0721 0.46 +0.4 715,801 + Synpcc7942_0721 0.72 +1.0 715,806 + Synpcc7942_0721 0.74 +0.2 715,806 + Synpcc7942_0721 0.74 +0.4 715,815 + Synpcc7942_0721 0.77 -2.4 715,829 + Synpcc7942_0721 0.81 +0.7 715,943 - -1.1 715,943 - -0.1 715,943 - -0.1 715,969 + -1.7 715,999 + +1.2 716,004 + -0.1 716,004 + +0.4 716,011 - +0.7 716,071 + Synpcc7942_0722 0.12 -2.1 716,082 + Synpcc7942_0722 0.13 -0.3 716,082 + Synpcc7942_0722 0.13 +0.1 716,089 - Synpcc7942_0722 0.13 +0.4 716,089 - Synpcc7942_0722 0.13 -0.1 716,089 - Synpcc7942_0722 0.13 -1.7 716,090 - Synpcc7942_0722 0.14 +1.3 716,090 - Synpcc7942_0722 0.14 +0.7 716,101 + Synpcc7942_0722 0.15 +0.8 716,109 - Synpcc7942_0722 0.15 -1.7 716,109 - Synpcc7942_0722 0.15 +0.7 716,116 + Synpcc7942_0722 0.16 -2.9 716,124 - Synpcc7942_0722 0.17 +0.9 716,149 - Synpcc7942_0722 0.19 +0.2 716,151 + Synpcc7942_0722 0.19 +0.7 716,151 + Synpcc7942_0722 0.19 -2.7 716,159 - Synpcc7942_0722 0.20 -0.5 716,184 - Synpcc7942_0722 0.22 -1.1 716,220 + Synpcc7942_0722 0.26 +0.4 716,220 + Synpcc7942_0722 0.26 +0.5 716,221 + Synpcc7942_0722 0.26 +2.1 716,230 + Synpcc7942_0722 0.27 -0.1 716,236 + Synpcc7942_0722 0.27 +1.6 716,284 + Synpcc7942_0722 0.31 -1.1 716,289 + +2.5 716,301 + Synpcc7942_0722 0.33 -0.1 716,309 - Synpcc7942_0722 0.34 -3.4 716,309 - Synpcc7942_0722 0.34 +1.0 716,309 - Synpcc7942_0722 0.34 +0.6 716,309 - Synpcc7942_0722 0.34 +0.2 716,341 + Synpcc7942_0722 0.37 -1.4 716,356 + Synpcc7942_0722 0.38 -0.8 716,356 + Synpcc7942_0722 0.38 +1.2 716,358 + Synpcc7942_0722 0.38 -0.1 716,374 - Synpcc7942_0722 0.40 +1.2 716,378 + Synpcc7942_0722 0.40 -0.2 716,378 - Synpcc7942_0722 0.40 +0.6 716,386 - Synpcc7942_0722 0.41 +0.5 716,387 - Synpcc7942_0722 0.41 -0.3
Or see this region's nucleotide sequence