Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt smf and act are separated by 32 nucleotides act and Synpcc7942_0705 overlap by 14 nucleotides Synpcc7942_0705 and cobL are separated by 6 nucleotides
Synpcc7942_0703: smf - DNA processing protein DprA, putative, at 694,072 to 695,280
smf
Synpcc7942_0704: act - Chloramphenicol O-acetyltransferase, at 695,313 to 695,948
act
Synpcc7942_0705: Synpcc7942_0705 - hypothetical protein, at 695,935 to 696,570
_0705
Synpcc7942_0706: cobL - precorrin-6B methylase, at 696,577 to 697,191
cobL
Position (kb) 695
696 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 694.326 kb on - strand, within smf at 694.335 kb on + strand, within smf at 694.342 kb on - strand, within smf at 694.388 kb on + strand, within smf at 694.388 kb on + strand, within smf at 694.436 kb on + strand, within smf at 694.441 kb on + strand, within smf at 694.460 kb on + strand, within smf at 694.460 kb on + strand, within smf at 694.468 kb on - strand, within smf at 694.468 kb on - strand, within smf at 694.468 kb on - strand, within smf at 694.468 kb on - strand, within smf at 694.468 kb on - strand, within smf at 694.470 kb on + strand, within smf at 694.510 kb on - strand, within smf at 694.514 kb on + strand, within smf at 694.514 kb on + strand, within smf at 694.514 kb on + strand, within smf at 694.514 kb on + strand, within smf at 694.522 kb on - strand, within smf at 694.522 kb on - strand, within smf at 694.547 kb on - strand, within smf at 694.547 kb on - strand, within smf at 694.547 kb on - strand, within smf at 694.554 kb on + strand, within smf at 694.586 kb on - strand, within smf at 694.602 kb on + strand, within smf at 694.602 kb on + strand, within smf at 694.602 kb on + strand, within smf at 694.602 kb on + strand, within smf at 694.610 kb on - strand, within smf at 694.627 kb on + strand, within smf at 694.650 kb on + strand, within smf at 694.658 kb on - strand, within smf at 694.658 kb on - strand, within smf at 694.666 kb on + strand, within smf at 694.668 kb on + strand, within smf at 694.673 kb on + strand, within smf at 694.681 kb on - strand, within smf at 694.681 kb on - strand at 694.706 kb on + strand, within smf at 694.750 kb on - strand, within smf at 694.761 kb on + strand, within smf at 694.761 kb on + strand, within smf at 694.821 kb on + strand, within smf at 694.824 kb on + strand, within smf at 694.836 kb on + strand, within smf at 694.836 kb on + strand, within smf at 694.842 kb on - strand, within smf at 694.842 kb on - strand, within smf at 694.856 kb on + strand, within smf at 694.938 kb on + strand, within smf at 694.938 kb on + strand, within smf at 694.938 kb on + strand at 694.938 kb on + strand, within smf at 694.946 kb on - strand, within smf at 695.104 kb on + strand, within smf at 695.122 kb on + strand, within smf at 695.127 kb on + strand, within smf at 695.135 kb on - strand, within smf at 695.135 kb on - strand, within smf at 695.137 kb on - strand, within smf at 695.148 kb on - strand, within smf at 695.269 kb on - strand at 695.411 kb on + strand, within act at 695.556 kb on + strand, within act at 695.835 kb on + strand, within act at 696.145 kb on + strand, within Synpcc7942_0705 at 696.164 kb on + strand, within Synpcc7942_0705 at 696.209 kb on - strand, within Synpcc7942_0705 at 696.213 kb on + strand, within Synpcc7942_0705 at 696.301 kb on - strand, within Synpcc7942_0705 at 696.371 kb on - strand, within Synpcc7942_0705 at 696.387 kb on + strand, within Synpcc7942_0705 at 696.397 kb on + strand, within Synpcc7942_0705 at 696.397 kb on + strand, within Synpcc7942_0705 at 696.403 kb on - strand, within Synpcc7942_0705 at 696.464 kb on + strand, within Synpcc7942_0705 at 696.464 kb on - strand, within Synpcc7942_0705 at 696.466 kb on + strand, within Synpcc7942_0705 at 696.474 kb on - strand, within Synpcc7942_0705 at 696.474 kb on - strand at 696.474 kb on - strand, within Synpcc7942_0705 at 696.719 kb on + strand, within cobL at 696.722 kb on + strand, within cobL at 696.722 kb on + strand, within cobL at 696.724 kb on + strand, within cobL at 696.748 kb on + strand, within cobL at 696.756 kb on - strand, within cobL at 696.756 kb on - strand, within cobL at 696.770 kb on + strand, within cobL at 696.799 kb on - strand, within cobL at 696.799 kb on - strand, within cobL at 696.837 kb on + strand, within cobL at 696.845 kb on - strand, within cobL at 696.866 kb on - strand, within cobL at 696.888 kb on - strand, within cobL at 696.896 kb on + strand, within cobL at 696.923 kb on - strand, within cobL at 696.926 kb on + strand, within cobL at 696.930 kb on + strand, within cobL
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 694,326 - smf Synpcc7942_0703 0.21 -0.1 694,335 + smf Synpcc7942_0703 0.22 -0.1 694,342 - smf Synpcc7942_0703 0.22 -2.9 694,388 + smf Synpcc7942_0703 0.26 -1.4 694,388 + smf Synpcc7942_0703 0.26 +1.0 694,436 + smf Synpcc7942_0703 0.30 +0.5 694,441 + smf Synpcc7942_0703 0.31 +1.0 694,460 + smf Synpcc7942_0703 0.32 +1.6 694,460 + smf Synpcc7942_0703 0.32 +0.2 694,468 - smf Synpcc7942_0703 0.33 -1.1 694,468 - smf Synpcc7942_0703 0.33 -0.9 694,468 - smf Synpcc7942_0703 0.33 -0.7 694,468 - smf Synpcc7942_0703 0.33 -0.1 694,468 - smf Synpcc7942_0703 0.33 +0.2 694,470 + smf Synpcc7942_0703 0.33 -0.7 694,510 - smf Synpcc7942_0703 0.36 +1.1 694,514 + smf Synpcc7942_0703 0.37 +0.0 694,514 + smf Synpcc7942_0703 0.37 -0.9 694,514 + smf Synpcc7942_0703 0.37 +0.6 694,514 + smf Synpcc7942_0703 0.37 +0.5 694,522 - smf Synpcc7942_0703 0.37 +0.1 694,522 - smf Synpcc7942_0703 0.37 -0.1 694,547 - smf Synpcc7942_0703 0.39 +1.1 694,547 - smf Synpcc7942_0703 0.39 -0.3 694,547 - smf Synpcc7942_0703 0.39 +1.0 694,554 + smf Synpcc7942_0703 0.40 +0.4 694,586 - smf Synpcc7942_0703 0.43 -0.7 694,602 + smf Synpcc7942_0703 0.44 +0.2 694,602 + smf Synpcc7942_0703 0.44 +0.6 694,602 + smf Synpcc7942_0703 0.44 -0.0 694,602 + smf Synpcc7942_0703 0.44 +1.0 694,610 - smf Synpcc7942_0703 0.44 -2.7 694,627 + smf Synpcc7942_0703 0.46 +1.4 694,650 + smf Synpcc7942_0703 0.48 +0.5 694,658 - smf Synpcc7942_0703 0.48 +0.1 694,658 - smf Synpcc7942_0703 0.48 -2.3 694,666 + smf Synpcc7942_0703 0.49 -2.9 694,668 + smf Synpcc7942_0703 0.49 -0.4 694,673 + smf Synpcc7942_0703 0.50 +0.9 694,681 - smf Synpcc7942_0703 0.50 -0.9 694,681 - -1.1 694,706 + smf Synpcc7942_0703 0.52 +1.7 694,750 - smf Synpcc7942_0703 0.56 +1.5 694,761 + smf Synpcc7942_0703 0.57 +0.1 694,761 + smf Synpcc7942_0703 0.57 +3.2 694,821 + smf Synpcc7942_0703 0.62 +1.3 694,824 + smf Synpcc7942_0703 0.62 +0.5 694,836 + smf Synpcc7942_0703 0.63 -1.2 694,836 + smf Synpcc7942_0703 0.63 -2.1 694,842 - smf Synpcc7942_0703 0.64 -0.8 694,842 - smf Synpcc7942_0703 0.64 -1.7 694,856 + smf Synpcc7942_0703 0.65 +0.5 694,938 + smf Synpcc7942_0703 0.72 +0.0 694,938 + smf Synpcc7942_0703 0.72 -0.2 694,938 + -0.1 694,938 + smf Synpcc7942_0703 0.72 +0.4 694,946 - smf Synpcc7942_0703 0.72 +1.5 695,104 + smf Synpcc7942_0703 0.85 -0.3 695,122 + smf Synpcc7942_0703 0.87 -0.2 695,127 + smf Synpcc7942_0703 0.87 +0.5 695,135 - smf Synpcc7942_0703 0.88 +2.9 695,135 - smf Synpcc7942_0703 0.88 -2.9 695,137 - smf Synpcc7942_0703 0.88 +2.1 695,148 - smf Synpcc7942_0703 0.89 -0.1 695,269 - +1.3 695,411 + act Synpcc7942_0704 0.15 +0.5 695,556 + act Synpcc7942_0704 0.38 +0.4 695,835 + act Synpcc7942_0704 0.82 +2.6 696,145 + Synpcc7942_0705 0.33 -0.1 696,164 + Synpcc7942_0705 0.36 -0.4 696,209 - Synpcc7942_0705 0.43 -3.4 696,213 + Synpcc7942_0705 0.44 +0.8 696,301 - Synpcc7942_0705 0.58 -0.4 696,371 - Synpcc7942_0705 0.69 +0.7 696,387 + Synpcc7942_0705 0.71 +1.0 696,397 + Synpcc7942_0705 0.73 -0.9 696,397 + Synpcc7942_0705 0.73 -0.2 696,403 - Synpcc7942_0705 0.74 -1.1 696,464 + Synpcc7942_0705 0.83 -1.3 696,464 - Synpcc7942_0705 0.83 -1.9 696,466 + Synpcc7942_0705 0.83 -0.5 696,474 - Synpcc7942_0705 0.85 +0.6 696,474 - +1.7 696,474 - Synpcc7942_0705 0.85 +1.5 696,719 + cobL Synpcc7942_0706 0.23 -1.1 696,722 + cobL Synpcc7942_0706 0.24 -0.2 696,722 + cobL Synpcc7942_0706 0.24 -1.6 696,724 + cobL Synpcc7942_0706 0.24 -2.1 696,748 + cobL Synpcc7942_0706 0.28 -1.4 696,756 - cobL Synpcc7942_0706 0.29 +0.6 696,756 - cobL Synpcc7942_0706 0.29 -3.1 696,770 + cobL Synpcc7942_0706 0.31 -3.1 696,799 - cobL Synpcc7942_0706 0.36 -1.8 696,799 - cobL Synpcc7942_0706 0.36 -2.1 696,837 + cobL Synpcc7942_0706 0.42 -4.1 696,845 - cobL Synpcc7942_0706 0.44 -0.5 696,866 - cobL Synpcc7942_0706 0.47 -1.4 696,888 - cobL Synpcc7942_0706 0.51 -1.7 696,896 + cobL Synpcc7942_0706 0.52 -2.5 696,923 - cobL Synpcc7942_0706 0.56 -0.7 696,926 + cobL Synpcc7942_0706 0.57 +0.9 696,930 + cobL Synpcc7942_0706 0.57 -2.7
Or see this region's nucleotide sequence