Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0646 and Synpcc7942_0647 are separated by 203 nucleotides Synpcc7942_0647 and Synpcc7942_0648 are separated by 104 nucleotides Synpcc7942_0648 and rpoD1 are separated by 72 nucleotides
Synpcc7942_0646: Synpcc7942_0646 - hypothetical protein, at 640,765 to 640,992
_0646
Synpcc7942_0647: Synpcc7942_0647 - hypothetical protein, at 641,196 to 641,738
_0647
Synpcc7942_0648: Synpcc7942_0648 - hypothetical protein, at 641,843 to 642,694
_0648
Synpcc7942_0649: rpoD1 - RNA polymerase sigma factor RpoD, at 642,767 to 643,966
rpoD1
Position (kb) 641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 640.905 kb on - strand, within Synpcc7942_0646 at 640.931 kb on - strand, within Synpcc7942_0646 at 640.956 kb on + strand, within Synpcc7942_0646 at 640.986 kb on + strand at 641.015 kb on + strand at 641.025 kb on + strand at 641.028 kb on - strand at 641.051 kb on + strand at 641.053 kb on + strand at 641.059 kb on - strand at 641.059 kb on - strand at 641.069 kb on + strand at 641.086 kb on + strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.123 kb on - strand at 641.125 kb on + strand at 641.166 kb on + strand at 641.335 kb on + strand, within Synpcc7942_0647 at 641.343 kb on - strand, within Synpcc7942_0647 at 641.371 kb on - strand, within Synpcc7942_0647 at 641.391 kb on - strand, within Synpcc7942_0647 at 641.425 kb on + strand, within Synpcc7942_0647 at 641.455 kb on - strand, within Synpcc7942_0647 at 641.535 kb on - strand, within Synpcc7942_0647 at 641.549 kb on - strand, within Synpcc7942_0647 at 641.553 kb on + strand, within Synpcc7942_0647 at 641.554 kb on - strand, within Synpcc7942_0647 at 641.649 kb on + strand, within Synpcc7942_0647 at 641.699 kb on - strand at 641.699 kb on - strand at 641.728 kb on - strand at 641.752 kb on + strand at 641.774 kb on + strand at 641.774 kb on + strand at 641.774 kb on + strand at 641.774 kb on + strand at 641.782 kb on - strand at 641.782 kb on - strand at 641.807 kb on - strand at 642.119 kb on - strand, within Synpcc7942_0648 at 642.248 kb on + strand, within Synpcc7942_0648 at 642.350 kb on + strand, within Synpcc7942_0648 at 642.584 kb on - strand, within Synpcc7942_0648 at 642.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 640,905 - Synpcc7942_0646 0.61 +0.4 640,931 - Synpcc7942_0646 0.73 -3.1 640,956 + Synpcc7942_0646 0.84 +0.7 640,986 + +0.4 641,015 + +0.6 641,025 + -0.4 641,028 - +0.3 641,051 + -1.7 641,053 + -0.1 641,059 - +1.3 641,059 - +0.5 641,069 + -1.8 641,086 + +0.2 641,120 + +0.9 641,120 + +1.8 641,123 - -2.1 641,125 + +0.1 641,166 + -0.9 641,335 + Synpcc7942_0647 0.26 -1.3 641,343 - Synpcc7942_0647 0.27 +1.1 641,371 - Synpcc7942_0647 0.32 -2.3 641,391 - Synpcc7942_0647 0.36 +0.8 641,425 + Synpcc7942_0647 0.42 +0.3 641,455 - Synpcc7942_0647 0.48 -0.1 641,535 - Synpcc7942_0647 0.62 -1.7 641,549 - Synpcc7942_0647 0.65 +0.6 641,553 + Synpcc7942_0647 0.66 -0.0 641,554 - Synpcc7942_0647 0.66 -1.9 641,649 + Synpcc7942_0647 0.83 +1.5 641,699 - -2.4 641,699 - +1.4 641,728 - -0.7 641,752 + +1.5 641,774 + -0.8 641,774 + -0.7 641,774 + -1.7 641,774 + -0.4 641,782 - -0.5 641,782 - +2.7 641,807 - -1.3 642,119 - Synpcc7942_0648 0.32 +0.3 642,248 + Synpcc7942_0648 0.48 -2.1 642,350 + Synpcc7942_0648 0.60 +0.8 642,584 - Synpcc7942_0648 0.87 +0.8 642,758 + +1.4
Or see this region's nucleotide sequence