Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0605 and aat overlap by 8 nucleotides aat and Synpcc7942_0607 are separated by 13 nucleotides Synpcc7942_0607 and Synpcc7942_0608 are separated by 48 nucleotides Synpcc7942_0608 and ndhD4 are separated by 83 nucleotides
Synpcc7942_0605: Synpcc7942_0605 - hypothetical protein, at 593,711 to 594,694
_0605
Synpcc7942_0606: aat - leucyl/phenylalanyl-tRNA--protein transferase, at 594,687 to 595,367
aat
Synpcc7942_0607: Synpcc7942_0607 - hypothetical protein, at 595,381 to 595,707
_0607
Synpcc7942_0608: Synpcc7942_0608 - hypothetical protein, at 595,756 to 596,298
_0608
Synpcc7942_0609: ndhD4 - proton-translocating NADH-quinone oxidoreductase, chain M, at 596,382 to 597,872
ndhD4
Position (kb) 595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 594.387 kb on + strand, within Synpcc7942_0605 at 594.418 kb on + strand, within Synpcc7942_0605 at 594.432 kb on + strand, within Synpcc7942_0605 at 594.440 kb on - strand, within Synpcc7942_0605 at 594.448 kb on - strand, within Synpcc7942_0605 at 594.527 kb on - strand, within Synpcc7942_0605 at 594.529 kb on + strand, within Synpcc7942_0605 at 594.532 kb on - strand, within Synpcc7942_0605 at 594.546 kb on - strand, within Synpcc7942_0605 at 594.553 kb on + strand, within Synpcc7942_0605 at 594.572 kb on - strand, within Synpcc7942_0605 at 594.593 kb on + strand, within Synpcc7942_0605 at 594.601 kb on - strand at 594.603 kb on + strand at 594.625 kb on + strand at 594.625 kb on + strand at 594.648 kb on - strand at 594.657 kb on + strand at 594.695 kb on + strand at 594.698 kb on - strand at 594.704 kb on + strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.712 kb on + strand at 594.722 kb on + strand at 594.730 kb on - strand at 594.730 kb on - strand at 594.793 kb on + strand, within aat at 594.801 kb on - strand, within aat at 594.887 kb on - strand, within aat at 595.026 kb on - strand, within aat at 595.031 kb on - strand, within aat at 595.063 kb on - strand, within aat at 595.095 kb on - strand, within aat at 595.152 kb on - strand, within aat at 595.242 kb on + strand, within aat at 595.252 kb on + strand, within aat at 595.255 kb on - strand, within aat at 595.260 kb on - strand, within aat at 595.270 kb on + strand, within aat at 595.403 kb on - strand at 595.458 kb on + strand, within Synpcc7942_0607 at 595.458 kb on + strand, within Synpcc7942_0607 at 595.466 kb on - strand, within Synpcc7942_0607 at 595.471 kb on + strand, within Synpcc7942_0607 at 595.476 kb on - strand, within Synpcc7942_0607 at 595.479 kb on - strand, within Synpcc7942_0607 at 595.537 kb on + strand, within Synpcc7942_0607 at 595.558 kb on + strand, within Synpcc7942_0607 at 595.599 kb on - strand, within Synpcc7942_0607 at 595.603 kb on - strand, within Synpcc7942_0607 at 595.689 kb on - strand at 595.695 kb on + strand at 595.734 kb on - strand at 595.762 kb on + strand at 595.786 kb on - strand at 595.791 kb on - strand at 595.805 kb on - strand at 595.827 kb on + strand, within Synpcc7942_0608 at 595.859 kb on + strand, within Synpcc7942_0608 at 595.973 kb on + strand, within Synpcc7942_0608 at 595.990 kb on - strand, within Synpcc7942_0608 at 595.990 kb on - strand, within Synpcc7942_0608 at 596.012 kb on + strand, within Synpcc7942_0608 at 596.039 kb on - strand, within Synpcc7942_0608 at 596.052 kb on - strand, within Synpcc7942_0608 at 596.103 kb on + strand, within Synpcc7942_0608 at 596.103 kb on + strand, within Synpcc7942_0608 at 596.103 kb on + strand, within Synpcc7942_0608 at 596.118 kb on + strand, within Synpcc7942_0608 at 596.125 kb on + strand, within Synpcc7942_0608 at 596.125 kb on + strand, within Synpcc7942_0608 at 596.125 kb on + strand, within Synpcc7942_0608 at 596.125 kb on + strand, within Synpcc7942_0608 at 596.125 kb on + strand, within Synpcc7942_0608 at 596.125 kb on + strand, within Synpcc7942_0608 at 596.126 kb on - strand, within Synpcc7942_0608 at 596.130 kb on + strand, within Synpcc7942_0608 at 596.133 kb on - strand, within Synpcc7942_0608 at 596.133 kb on - strand, within Synpcc7942_0608 at 596.133 kb on - strand, within Synpcc7942_0608 at 596.133 kb on - strand, within Synpcc7942_0608 at 596.133 kb on - strand, within Synpcc7942_0608 at 596.133 kb on - strand, within Synpcc7942_0608 at 596.133 kb on - strand, within Synpcc7942_0608 at 596.180 kb on + strand, within Synpcc7942_0608 at 596.188 kb on - strand at 596.199 kb on + strand, within Synpcc7942_0608 at 596.207 kb on + strand, within Synpcc7942_0608 at 596.207 kb on - strand, within Synpcc7942_0608 at 596.212 kb on - strand, within Synpcc7942_0608 at 596.213 kb on - strand, within Synpcc7942_0608 at 596.213 kb on - strand, within Synpcc7942_0608 at 596.288 kb on - strand at 596.313 kb on + strand at 596.320 kb on + strand at 596.320 kb on + strand at 596.320 kb on + strand at 596.320 kb on + strand at 596.320 kb on + strand at 596.328 kb on - strand at 596.328 kb on - strand at 596.328 kb on - strand at 596.328 kb on - strand at 596.332 kb on + strand at 596.332 kb on + strand at 596.366 kb on - strand at 596.366 kb on - strand at 596.387 kb on - strand at 596.437 kb on + strand at 596.445 kb on - strand at 596.445 kb on - strand at 596.452 kb on + strand at 596.461 kb on + strand at 596.570 kb on + strand, within ndhD4 at 596.570 kb on + strand, within ndhD4 at 596.578 kb on - strand, within ndhD4 at 596.578 kb on - strand, within ndhD4 at 596.578 kb on - strand, within ndhD4 at 596.592 kb on - strand, within ndhD4 at 596.592 kb on - strand, within ndhD4 at 596.625 kb on - strand at 596.638 kb on + strand, within ndhD4 at 596.647 kb on - strand, within ndhD4 at 596.647 kb on - strand, within ndhD4 at 596.648 kb on + strand, within ndhD4 at 596.649 kb on + strand, within ndhD4 at 596.649 kb on + strand, within ndhD4 at 596.649 kb on + strand, within ndhD4 at 596.683 kb on + strand, within ndhD4 at 596.705 kb on + strand, within ndhD4
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 594,387 + Synpcc7942_0605 0.69 +0.3 594,418 + Synpcc7942_0605 0.72 +1.3 594,432 + Synpcc7942_0605 0.73 +1.4 594,440 - Synpcc7942_0605 0.74 -0.5 594,448 - Synpcc7942_0605 0.75 +0.9 594,527 - Synpcc7942_0605 0.83 +0.2 594,529 + Synpcc7942_0605 0.83 +0.7 594,532 - Synpcc7942_0605 0.83 +0.5 594,546 - Synpcc7942_0605 0.85 +0.9 594,553 + Synpcc7942_0605 0.86 +1.6 594,572 - Synpcc7942_0605 0.88 +1.1 594,593 + Synpcc7942_0605 0.90 +1.2 594,601 - +0.3 594,603 + +1.2 594,625 + -0.1 594,625 + -0.4 594,648 - +0.3 594,657 + +1.9 594,695 + -3.7 594,698 - -1.7 594,704 + -2.2 594,704 - -0.0 594,704 - +0.9 594,712 + +1.3 594,722 + +0.0 594,730 - -2.1 594,730 - +0.7 594,793 + aat Synpcc7942_0606 0.16 -0.5 594,801 - aat Synpcc7942_0606 0.17 +0.7 594,887 - aat Synpcc7942_0606 0.29 -3.3 595,026 - aat Synpcc7942_0606 0.50 +1.5 595,031 - aat Synpcc7942_0606 0.51 -1.4 595,063 - aat Synpcc7942_0606 0.55 +0.9 595,095 - aat Synpcc7942_0606 0.60 -0.2 595,152 - aat Synpcc7942_0606 0.68 -0.2 595,242 + aat Synpcc7942_0606 0.81 -3.3 595,252 + aat Synpcc7942_0606 0.83 -0.3 595,255 - aat Synpcc7942_0606 0.83 -3.7 595,260 - aat Synpcc7942_0606 0.84 +1.2 595,270 + aat Synpcc7942_0606 0.86 +0.5 595,403 - -2.0 595,458 + Synpcc7942_0607 0.24 +1.1 595,458 + Synpcc7942_0607 0.24 -2.1 595,466 - Synpcc7942_0607 0.26 -0.0 595,471 + Synpcc7942_0607 0.28 -0.1 595,476 - Synpcc7942_0607 0.29 -1.9 595,479 - Synpcc7942_0607 0.30 +0.4 595,537 + Synpcc7942_0607 0.48 -1.1 595,558 + Synpcc7942_0607 0.54 +2.5 595,599 - Synpcc7942_0607 0.67 +0.8 595,603 - Synpcc7942_0607 0.68 +1.4 595,689 - +2.3 595,695 + -0.1 595,734 - +0.2 595,762 + -1.0 595,786 - -0.6 595,791 - +0.2 595,805 - +0.5 595,827 + Synpcc7942_0608 0.13 -2.1 595,859 + Synpcc7942_0608 0.19 -0.5 595,973 + Synpcc7942_0608 0.40 +1.0 595,990 - Synpcc7942_0608 0.43 -0.1 595,990 - Synpcc7942_0608 0.43 -0.0 596,012 + Synpcc7942_0608 0.47 +0.2 596,039 - Synpcc7942_0608 0.52 -1.1 596,052 - Synpcc7942_0608 0.55 +0.4 596,103 + Synpcc7942_0608 0.64 -1.9 596,103 + Synpcc7942_0608 0.64 -0.1 596,103 + Synpcc7942_0608 0.64 -2.0 596,118 + Synpcc7942_0608 0.67 -1.7 596,125 + Synpcc7942_0608 0.68 +0.2 596,125 + Synpcc7942_0608 0.68 +1.5 596,125 + Synpcc7942_0608 0.68 -2.1 596,125 + Synpcc7942_0608 0.68 -2.0 596,125 + Synpcc7942_0608 0.68 +0.6 596,125 + Synpcc7942_0608 0.68 -2.1 596,126 - Synpcc7942_0608 0.68 +0.3 596,130 + Synpcc7942_0608 0.69 -2.1 596,133 - Synpcc7942_0608 0.69 -0.1 596,133 - Synpcc7942_0608 0.69 -0.1 596,133 - Synpcc7942_0608 0.69 -1.8 596,133 - Synpcc7942_0608 0.69 +1.0 596,133 - Synpcc7942_0608 0.69 -0.1 596,133 - Synpcc7942_0608 0.69 +0.1 596,133 - Synpcc7942_0608 0.69 +1.1 596,180 + Synpcc7942_0608 0.78 -1.7 596,188 - -0.1 596,199 + Synpcc7942_0608 0.82 +0.3 596,207 + Synpcc7942_0608 0.83 -1.4 596,207 - Synpcc7942_0608 0.83 -0.1 596,212 - Synpcc7942_0608 0.84 +0.3 596,213 - Synpcc7942_0608 0.84 -2.3 596,213 - Synpcc7942_0608 0.84 +1.2 596,288 - +1.9 596,313 + -1.4 596,320 + +0.9 596,320 + -0.1 596,320 + -0.1 596,320 + +0.6 596,320 + +2.2 596,328 - -1.7 596,328 - -0.8 596,328 - -0.9 596,328 - +0.3 596,332 + -2.9 596,332 + +1.5 596,366 - +0.3 596,366 - +2.2 596,387 - +2.7 596,437 + +3.7 596,445 - -1.9 596,445 - +1.7 596,452 + -0.1 596,461 + -0.8 596,570 + ndhD4 Synpcc7942_0609 0.13 -0.4 596,570 + ndhD4 Synpcc7942_0609 0.13 +0.4 596,578 - ndhD4 Synpcc7942_0609 0.13 +1.0 596,578 - ndhD4 Synpcc7942_0609 0.13 -1.4 596,578 - ndhD4 Synpcc7942_0609 0.13 +0.5 596,592 - ndhD4 Synpcc7942_0609 0.14 -1.3 596,592 - ndhD4 Synpcc7942_0609 0.14 +1.3 596,625 - -0.1 596,638 + ndhD4 Synpcc7942_0609 0.17 -0.1 596,647 - ndhD4 Synpcc7942_0609 0.18 -1.4 596,647 - ndhD4 Synpcc7942_0609 0.18 -1.2 596,648 + ndhD4 Synpcc7942_0609 0.18 -0.4 596,649 + ndhD4 Synpcc7942_0609 0.18 +0.1 596,649 + ndhD4 Synpcc7942_0609 0.18 -0.4 596,649 + ndhD4 Synpcc7942_0609 0.18 +1.0 596,683 + ndhD4 Synpcc7942_0609 0.20 -1.1 596,705 + ndhD4 Synpcc7942_0609 0.22 +0.9
Or see this region's nucleotide sequence