Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glgC and rpe are separated by 138 nucleotides rpe and Synpcc7942_0605 are separated by 77 nucleotides Synpcc7942_0605 and aat overlap by 8 nucleotides aat and Synpcc7942_0607 are separated by 13 nucleotides
Synpcc7942_0603: glgC - glucose-1-phosphate adenylyltransferase, at 591,459 to 592,751
glgC
Synpcc7942_0604: rpe - ribulose-phosphate 3-epimerase, at 592,890 to 593,633
rpe
Synpcc7942_0605: Synpcc7942_0605 - hypothetical protein, at 593,711 to 594,694
_0605
Synpcc7942_0606: aat - leucyl/phenylalanyl-tRNA--protein transferase, at 594,687 to 595,367
aat
Synpcc7942_0607: Synpcc7942_0607 - hypothetical protein, at 595,381 to 595,707
_0607
Position (kb) 593
594
595 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 592.769 kb on - strand at 592.769 kb on - strand at 592.807 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.845 kb on - strand at 592.850 kb on - strand at 592.852 kb on + strand at 592.861 kb on - strand at 592.863 kb on + strand at 592.871 kb on - strand at 592.873 kb on + strand at 592.873 kb on + strand at 592.880 kb on + strand at 592.887 kb on - strand at 592.888 kb on - strand at 592.896 kb on - strand at 592.908 kb on - strand at 592.947 kb on - strand at 592.947 kb on - strand at 593.636 kb on - strand at 593.636 kb on - strand at 593.646 kb on + strand at 593.654 kb on - strand at 593.661 kb on - strand at 593.701 kb on + strand at 593.703 kb on - strand at 593.834 kb on - strand, within Synpcc7942_0605 at 593.840 kb on + strand, within Synpcc7942_0605 at 593.840 kb on + strand, within Synpcc7942_0605 at 593.872 kb on + strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.933 kb on - strand, within Synpcc7942_0605 at 593.942 kb on + strand, within Synpcc7942_0605 at 593.958 kb on + strand, within Synpcc7942_0605 at 593.966 kb on - strand, within Synpcc7942_0605 at 594.023 kb on - strand, within Synpcc7942_0605 at 594.087 kb on - strand, within Synpcc7942_0605 at 594.088 kb on + strand, within Synpcc7942_0605 at 594.088 kb on + strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.118 kb on - strand, within Synpcc7942_0605 at 594.123 kb on - strand, within Synpcc7942_0605 at 594.137 kb on + strand, within Synpcc7942_0605 at 594.137 kb on - strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.155 kb on + strand, within Synpcc7942_0605 at 594.169 kb on + strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.209 kb on + strand, within Synpcc7942_0605 at 594.246 kb on + strand, within Synpcc7942_0605 at 594.268 kb on - strand, within Synpcc7942_0605 at 594.286 kb on + strand, within Synpcc7942_0605 at 594.309 kb on + strand, within Synpcc7942_0605 at 594.319 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.347 kb on + strand, within Synpcc7942_0605 at 594.387 kb on + strand, within Synpcc7942_0605 at 594.418 kb on + strand, within Synpcc7942_0605 at 594.432 kb on + strand, within Synpcc7942_0605 at 594.440 kb on - strand, within Synpcc7942_0605 at 594.448 kb on - strand, within Synpcc7942_0605 at 594.527 kb on - strand, within Synpcc7942_0605 at 594.529 kb on + strand, within Synpcc7942_0605 at 594.532 kb on - strand, within Synpcc7942_0605 at 594.546 kb on - strand, within Synpcc7942_0605 at 594.553 kb on + strand, within Synpcc7942_0605 at 594.572 kb on - strand, within Synpcc7942_0605 at 594.593 kb on + strand, within Synpcc7942_0605 at 594.601 kb on - strand at 594.603 kb on + strand at 594.625 kb on + strand at 594.625 kb on + strand at 594.648 kb on - strand at 594.657 kb on + strand at 594.695 kb on + strand at 594.698 kb on - strand at 594.704 kb on + strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.712 kb on + strand at 594.722 kb on + strand at 594.730 kb on - strand at 594.730 kb on - strand at 594.793 kb on + strand, within aat at 594.801 kb on - strand, within aat at 594.887 kb on - strand, within aat at 595.026 kb on - strand, within aat at 595.031 kb on - strand, within aat at 595.063 kb on - strand, within aat at 595.095 kb on - strand, within aat at 595.152 kb on - strand, within aat at 595.242 kb on + strand, within aat at 595.252 kb on + strand, within aat at 595.255 kb on - strand, within aat at 595.260 kb on - strand, within aat at 595.270 kb on + strand, within aat at 595.403 kb on - strand at 595.458 kb on + strand, within Synpcc7942_0607 at 595.458 kb on + strand, within Synpcc7942_0607 at 595.466 kb on - strand, within Synpcc7942_0607 at 595.471 kb on + strand, within Synpcc7942_0607 at 595.476 kb on - strand, within Synpcc7942_0607 at 595.479 kb on - strand, within Synpcc7942_0607 at 595.537 kb on + strand, within Synpcc7942_0607 at 595.558 kb on + strand, within Synpcc7942_0607 at 595.599 kb on - strand, within Synpcc7942_0607 at 595.603 kb on - strand, within Synpcc7942_0607 at 595.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 592,769 - -0.1 592,769 - -1.7 592,807 + -1.9 592,837 + -1.3 592,837 + -0.6 592,837 + -1.4 592,845 - +3.7 592,850 - +1.9 592,852 + +2.1 592,861 - -2.4 592,863 + +0.0 592,871 - +0.3 592,873 + -1.1 592,873 + +1.5 592,880 + +0.1 592,887 - +0.2 592,888 - +0.5 592,896 - +1.1 592,908 - +0.4 592,947 - -1.4 592,947 - -1.7 593,636 - -0.2 593,636 - -3.5 593,646 + +0.2 593,654 - +0.2 593,661 - +0.8 593,701 + +0.6 593,703 - +0.2 593,834 - Synpcc7942_0605 0.12 +1.0 593,840 + Synpcc7942_0605 0.13 +1.6 593,840 + Synpcc7942_0605 0.13 +1.1 593,872 + Synpcc7942_0605 0.16 +0.6 593,880 - Synpcc7942_0605 0.17 +0.8 593,880 - Synpcc7942_0605 0.17 -0.1 593,880 - Synpcc7942_0605 0.17 +2.8 593,933 - Synpcc7942_0605 0.23 +1.3 593,942 + Synpcc7942_0605 0.23 +0.9 593,958 + Synpcc7942_0605 0.25 +1.0 593,966 - Synpcc7942_0605 0.26 +0.4 594,023 - Synpcc7942_0605 0.32 -0.3 594,087 - Synpcc7942_0605 0.38 -0.4 594,088 + Synpcc7942_0605 0.38 +0.2 594,088 + Synpcc7942_0605 0.38 -2.7 594,096 - Synpcc7942_0605 0.39 +0.9 594,096 - -1.1 594,096 - Synpcc7942_0605 0.39 -2.4 594,096 - Synpcc7942_0605 0.39 +0.7 594,096 - Synpcc7942_0605 0.39 -2.1 594,096 - Synpcc7942_0605 0.39 -0.3 594,118 - Synpcc7942_0605 0.41 +0.3 594,123 - Synpcc7942_0605 0.42 +0.6 594,137 + Synpcc7942_0605 0.43 +0.8 594,137 - Synpcc7942_0605 0.43 +0.9 594,145 + Synpcc7942_0605 0.44 +0.9 594,145 + Synpcc7942_0605 0.44 +2.5 594,145 + Synpcc7942_0605 0.44 -2.1 594,153 - Synpcc7942_0605 0.45 -1.1 594,153 - Synpcc7942_0605 0.45 +1.9 594,153 - Synpcc7942_0605 0.45 -0.1 594,153 - Synpcc7942_0605 0.45 +1.6 594,155 + Synpcc7942_0605 0.45 -2.6 594,169 + Synpcc7942_0605 0.47 +1.1 594,177 - Synpcc7942_0605 0.47 +1.2 594,177 - Synpcc7942_0605 0.47 +1.6 594,177 - Synpcc7942_0605 0.47 +1.1 594,177 - Synpcc7942_0605 0.47 -1.4 594,209 + Synpcc7942_0605 0.51 +0.5 594,246 + Synpcc7942_0605 0.54 +0.2 594,268 - Synpcc7942_0605 0.57 +1.1 594,286 + Synpcc7942_0605 0.58 -2.1 594,309 + Synpcc7942_0605 0.61 -2.4 594,319 + Synpcc7942_0605 0.62 -0.3 594,322 + Synpcc7942_0605 0.62 +0.8 594,322 + Synpcc7942_0605 0.62 +0.6 594,322 + Synpcc7942_0605 0.62 +0.7 594,322 + Synpcc7942_0605 0.62 -0.9 594,330 - Synpcc7942_0605 0.63 -0.1 594,330 - Synpcc7942_0605 0.63 -1.1 594,330 - Synpcc7942_0605 0.63 +0.9 594,330 - Synpcc7942_0605 0.63 -0.4 594,330 - Synpcc7942_0605 0.63 +0.3 594,330 - Synpcc7942_0605 0.63 -0.6 594,330 - Synpcc7942_0605 0.63 +0.4 594,330 - Synpcc7942_0605 0.63 -1.0 594,347 + Synpcc7942_0605 0.65 -3.8 594,387 + Synpcc7942_0605 0.69 +0.3 594,418 + Synpcc7942_0605 0.72 +1.3 594,432 + Synpcc7942_0605 0.73 +1.4 594,440 - Synpcc7942_0605 0.74 -0.5 594,448 - Synpcc7942_0605 0.75 +0.9 594,527 - Synpcc7942_0605 0.83 +0.2 594,529 + Synpcc7942_0605 0.83 +0.7 594,532 - Synpcc7942_0605 0.83 +0.5 594,546 - Synpcc7942_0605 0.85 +0.9 594,553 + Synpcc7942_0605 0.86 +1.6 594,572 - Synpcc7942_0605 0.88 +1.1 594,593 + Synpcc7942_0605 0.90 +1.2 594,601 - +0.3 594,603 + +1.2 594,625 + -0.1 594,625 + -0.4 594,648 - +0.3 594,657 + +1.9 594,695 + -3.7 594,698 - -1.7 594,704 + -2.2 594,704 - -0.0 594,704 - +0.9 594,712 + +1.3 594,722 + +0.0 594,730 - -2.1 594,730 - +0.7 594,793 + aat Synpcc7942_0606 0.16 -0.5 594,801 - aat Synpcc7942_0606 0.17 +0.7 594,887 - aat Synpcc7942_0606 0.29 -3.3 595,026 - aat Synpcc7942_0606 0.50 +1.5 595,031 - aat Synpcc7942_0606 0.51 -1.4 595,063 - aat Synpcc7942_0606 0.55 +0.9 595,095 - aat Synpcc7942_0606 0.60 -0.2 595,152 - aat Synpcc7942_0606 0.68 -0.2 595,242 + aat Synpcc7942_0606 0.81 -3.3 595,252 + aat Synpcc7942_0606 0.83 -0.3 595,255 - aat Synpcc7942_0606 0.83 -3.7 595,260 - aat Synpcc7942_0606 0.84 +1.2 595,270 + aat Synpcc7942_0606 0.86 +0.5 595,403 - -2.0 595,458 + Synpcc7942_0607 0.24 +1.1 595,458 + Synpcc7942_0607 0.24 -2.1 595,466 - Synpcc7942_0607 0.26 -0.0 595,471 + Synpcc7942_0607 0.28 -0.1 595,476 - Synpcc7942_0607 0.29 -1.9 595,479 - Synpcc7942_0607 0.30 +0.4 595,537 + Synpcc7942_0607 0.48 -1.1 595,558 + Synpcc7942_0607 0.54 +2.5 595,599 - Synpcc7942_0607 0.67 +0.8 595,603 - Synpcc7942_0607 0.68 +1.4 595,689 - +2.3
Or see this region's nucleotide sequence