Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0540

Experiment: Ceftazidime 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttktA and Synpcc7942_0539 are separated by 95 nucleotidesSynpcc7942_0539 and Synpcc7942_0540 are separated by 13 nucleotidesSynpcc7942_0540 and Synpcc7942_0541 are separated by 3 nucleotidesSynpcc7942_0541 and lipA are separated by 297 nucleotides Synpcc7942_0538: tktA - transketolase, at 521,502 to 523,508 tktA Synpcc7942_0539: Synpcc7942_0539 - hypothetical protein, at 523,604 to 524,353 _0539 Synpcc7942_0540: Synpcc7942_0540 - hypothetical protein, at 524,367 to 524,828 _0540 Synpcc7942_0541: Synpcc7942_0541 - hypothetical protein, at 524,832 to 525,062 _0541 Synpcc7942_0542: lipA - lipoyl synthase, at 525,360 to 526,253 lipA Position (kb) 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 523.516 kb on + strandat 523.516 kb on + strandat 523.545 kb on + strandat 523.581 kb on + strandat 523.602 kb on + strandat 523.615 kb on + strandat 523.638 kb on - strandat 523.658 kb on - strandat 523.668 kb on + strandat 523.687 kb on + strand, within Synpcc7942_0539at 523.754 kb on - strand, within Synpcc7942_0539at 523.787 kb on + strand, within Synpcc7942_0539at 523.795 kb on - strand, within Synpcc7942_0539at 523.829 kb on - strand, within Synpcc7942_0539at 523.832 kb on + strand, within Synpcc7942_0539at 523.844 kb on + strand, within Synpcc7942_0539at 523.856 kb on + strand, within Synpcc7942_0539at 523.857 kb on - strand, within Synpcc7942_0539at 523.876 kb on + strand, within Synpcc7942_0539at 523.876 kb on + strand, within Synpcc7942_0539at 523.913 kb on + strand, within Synpcc7942_0539at 523.915 kb on + strand, within Synpcc7942_0539at 523.915 kb on + strand, within Synpcc7942_0539at 523.915 kb on + strand, within Synpcc7942_0539at 523.923 kb on + strand, within Synpcc7942_0539at 523.923 kb on - strand, within Synpcc7942_0539at 523.925 kb on + strand, within Synpcc7942_0539at 523.925 kb on + strand, within Synpcc7942_0539at 523.933 kb on - strand, within Synpcc7942_0539at 523.938 kb on - strand, within Synpcc7942_0539at 523.938 kb on - strand, within Synpcc7942_0539at 523.954 kb on - strand, within Synpcc7942_0539at 523.973 kb on + strand, within Synpcc7942_0539at 523.989 kb on + strand, within Synpcc7942_0539at 524.057 kb on + strand, within Synpcc7942_0539at 524.057 kb on + strand, within Synpcc7942_0539at 524.074 kb on - strand, within Synpcc7942_0539at 524.076 kb on + strand, within Synpcc7942_0539at 524.076 kb on + strand, within Synpcc7942_0539at 524.076 kb on + strand, within Synpcc7942_0539at 524.093 kb on + strand, within Synpcc7942_0539at 524.094 kb on - strand, within Synpcc7942_0539at 524.133 kb on + strand, within Synpcc7942_0539at 524.161 kb on - strand, within Synpcc7942_0539at 524.166 kb on - strand, within Synpcc7942_0539at 524.179 kb on + strand, within Synpcc7942_0539at 524.182 kb on - strand, within Synpcc7942_0539at 524.187 kb on - strand, within Synpcc7942_0539at 524.199 kb on + strand, within Synpcc7942_0539at 524.206 kb on + strand, within Synpcc7942_0539at 524.211 kb on + strand, within Synpcc7942_0539at 524.219 kb on - strand, within Synpcc7942_0539at 524.219 kb on - strandat 524.234 kb on - strand, within Synpcc7942_0539at 524.251 kb on + strand, within Synpcc7942_0539at 524.259 kb on - strand, within Synpcc7942_0539at 524.265 kb on - strand, within Synpcc7942_0539at 524.279 kb on - strandat 524.298 kb on + strandat 524.311 kb on + strandat 524.321 kb on + strandat 524.329 kb on - strandat 524.355 kb on - strandat 524.355 kb on - strandat 524.357 kb on - strandat 524.357 kb on - strandat 524.455 kb on - strandat 524.463 kb on - strand, within Synpcc7942_0540at 524.495 kb on + strand, within Synpcc7942_0540at 524.495 kb on + strand, within Synpcc7942_0540at 524.503 kb on - strand, within Synpcc7942_0540at 524.531 kb on - strand, within Synpcc7942_0540at 524.541 kb on + strand, within Synpcc7942_0540at 524.581 kb on + strand, within Synpcc7942_0540at 524.589 kb on - strand, within Synpcc7942_0540at 524.673 kb on - strandat 524.791 kb on + strandat 524.820 kb on - strandat 524.820 kb on - strandat 525.097 kb on - strandat 525.110 kb on + strandat 525.119 kb on + strandat 525.137 kb on - strandat 525.139 kb on + strandat 525.144 kb on + strandat 525.144 kb on + strandat 525.144 kb on - strandat 525.182 kb on + strandat 525.199 kb on + strandat 525.212 kb on + strandat 525.233 kb on - strandat 525.248 kb on + strandat 525.253 kb on + strandat 525.343 kb on + strandat 525.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml
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523,516 + +0.2
523,516 + -0.6
523,545 + -0.1
523,581 + +2.3
523,602 + +0.5
523,615 + -0.1
523,638 - +3.3
523,658 - -0.9
523,668 + -1.4
523,687 + Synpcc7942_0539 0.11 +2.4
523,754 - Synpcc7942_0539 0.20 +0.6
523,787 + Synpcc7942_0539 0.24 -0.1
523,795 - Synpcc7942_0539 0.25 -1.5
523,829 - Synpcc7942_0539 0.30 -0.7
523,832 + Synpcc7942_0539 0.30 -0.1
523,844 + Synpcc7942_0539 0.32 -1.1
523,856 + Synpcc7942_0539 0.34 +1.0
523,857 - Synpcc7942_0539 0.34 +0.2
523,876 + Synpcc7942_0539 0.36 -1.6
523,876 + Synpcc7942_0539 0.36 +0.5
523,913 + Synpcc7942_0539 0.41 +1.2
523,915 + Synpcc7942_0539 0.41 -0.4
523,915 + Synpcc7942_0539 0.41 +1.2
523,915 + Synpcc7942_0539 0.41 -0.4
523,923 + Synpcc7942_0539 0.43 -1.1
523,923 - Synpcc7942_0539 0.43 -0.5
523,925 + Synpcc7942_0539 0.43 +1.5
523,925 + Synpcc7942_0539 0.43 +0.6
523,933 - Synpcc7942_0539 0.44 +0.9
523,938 - Synpcc7942_0539 0.45 +0.4
523,938 - Synpcc7942_0539 0.45 +2.1
523,954 - Synpcc7942_0539 0.47 +1.9
523,973 + Synpcc7942_0539 0.49 +1.7
523,989 + Synpcc7942_0539 0.51 +0.8
524,057 + Synpcc7942_0539 0.60 -1.3
524,057 + Synpcc7942_0539 0.60 -1.1
524,074 - Synpcc7942_0539 0.63 +0.5
524,076 + Synpcc7942_0539 0.63 +0.7
524,076 + Synpcc7942_0539 0.63 -2.1
524,076 + Synpcc7942_0539 0.63 +3.8
524,093 + Synpcc7942_0539 0.65 +0.5
524,094 - Synpcc7942_0539 0.65 +0.3
524,133 + Synpcc7942_0539 0.71 -1.1
524,161 - Synpcc7942_0539 0.74 -1.7
524,166 - Synpcc7942_0539 0.75 -0.2
524,179 + Synpcc7942_0539 0.77 +0.4
524,182 - Synpcc7942_0539 0.77 +0.5
524,187 - Synpcc7942_0539 0.78 +1.1
524,199 + Synpcc7942_0539 0.79 -0.2
524,206 + Synpcc7942_0539 0.80 +3.5
524,211 + Synpcc7942_0539 0.81 -0.1
524,219 - Synpcc7942_0539 0.82 +2.1
524,219 - -1.1
524,234 - Synpcc7942_0539 0.84 -1.1
524,251 + Synpcc7942_0539 0.86 +2.5
524,259 - Synpcc7942_0539 0.87 +1.2
524,265 - Synpcc7942_0539 0.88 +0.7
524,279 - +1.1
524,298 + +0.7
524,311 + +0.9
524,321 + +2.9
524,329 - +0.2
524,355 - +0.6
524,355 - +1.6
524,357 - -2.9
524,357 - +1.5
524,455 - -2.4
524,463 - Synpcc7942_0540 0.21 +1.8
524,495 + Synpcc7942_0540 0.28 +1.1
524,495 + Synpcc7942_0540 0.28 +1.3
524,503 - Synpcc7942_0540 0.29 -1.7
524,531 - Synpcc7942_0540 0.35 +1.6
524,541 + Synpcc7942_0540 0.38 -2.5
524,581 + Synpcc7942_0540 0.46 -0.1
524,589 - Synpcc7942_0540 0.48 -0.4
524,673 - -0.1
524,791 + -1.9
524,820 - +0.7
524,820 - +1.4
525,097 - -3.2
525,110 + +0.9
525,119 + +0.3
525,137 - +1.9
525,139 + +1.1
525,144 + -0.1
525,144 + +0.2
525,144 - -2.7
525,182 + +2.5
525,199 + +0.9
525,212 + -1.7
525,233 - -0.8
525,248 + -1.2
525,253 + -2.5
525,343 + -1.7
525,351 - +1.2

Or see this region's nucleotide sequence