Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yibO and Synpcc7942_0470 are separated by 546 nucleotides Synpcc7942_0470 and lacG are separated by 137 nucleotides
Synpcc7942_0469: yibO - phosphoglyceromutase, at 455,066 to 456,664
yibO
Synpcc7942_0470: Synpcc7942_0470 - hypothetical protein, at 457,211 to 457,744
_0470
Synpcc7942_0471: lacG - ABC-type sugar transport system permease component-like, at 457,882 to 458,712
lacG
Position (kb) 457
458 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 456.671 kb on + strand at 456.671 kb on + strand at 456.671 kb on + strand at 456.745 kb on + strand at 456.805 kb on + strand at 456.824 kb on - strand at 456.829 kb on - strand at 456.959 kb on + strand at 456.959 kb on + strand at 456.966 kb on - strand at 456.967 kb on - strand at 456.967 kb on - strand at 456.967 kb on - strand at 456.969 kb on + strand at 456.974 kb on + strand at 456.977 kb on - strand at 456.982 kb on - strand at 456.982 kb on - strand at 456.992 kb on + strand at 457.044 kb on - strand at 457.060 kb on + strand at 457.136 kb on + strand at 457.137 kb on + strand at 457.159 kb on + strand at 457.162 kb on - strand at 457.164 kb on - strand at 457.167 kb on - strand at 457.186 kb on - strand at 457.205 kb on - strand at 457.260 kb on - strand at 457.299 kb on - strand, within Synpcc7942_0470 at 457.304 kb on + strand, within Synpcc7942_0470 at 457.304 kb on + strand, within Synpcc7942_0470 at 457.312 kb on - strand, within Synpcc7942_0470 at 457.312 kb on - strand, within Synpcc7942_0470 at 457.312 kb on - strand, within Synpcc7942_0470 at 457.312 kb on - strand, within Synpcc7942_0470 at 457.312 kb on - strand, within Synpcc7942_0470 at 457.346 kb on + strand, within Synpcc7942_0470 at 457.351 kb on + strand, within Synpcc7942_0470 at 457.385 kb on + strand, within Synpcc7942_0470 at 457.393 kb on - strand, within Synpcc7942_0470 at 457.412 kb on + strand at 457.441 kb on + strand at 457.441 kb on + strand at 457.477 kb on - strand, within Synpcc7942_0470 at 457.479 kb on + strand, within Synpcc7942_0470 at 457.482 kb on - strand, within Synpcc7942_0470 at 457.484 kb on + strand, within Synpcc7942_0470 at 457.490 kb on + strand, within Synpcc7942_0470 at 457.492 kb on - strand, within Synpcc7942_0470 at 457.492 kb on - strand at 457.508 kb on - strand, within Synpcc7942_0470 at 457.518 kb on + strand, within Synpcc7942_0470 at 457.525 kb on - strand, within Synpcc7942_0470 at 457.553 kb on - strand, within Synpcc7942_0470 at 457.572 kb on + strand, within Synpcc7942_0470 at 457.580 kb on - strand, within Synpcc7942_0470 at 457.582 kb on + strand, within Synpcc7942_0470 at 457.598 kb on + strand, within Synpcc7942_0470 at 457.605 kb on - strand, within Synpcc7942_0470 at 457.605 kb on - strand, within Synpcc7942_0470 at 457.608 kb on + strand, within Synpcc7942_0470 at 457.616 kb on - strand, within Synpcc7942_0470 at 457.647 kb on - strand, within Synpcc7942_0470 at 457.655 kb on + strand, within Synpcc7942_0470 at 457.692 kb on - strand at 457.692 kb on - strand at 457.757 kb on - strand at 457.780 kb on - strand at 457.785 kb on + strand at 457.785 kb on + strand at 457.793 kb on - strand at 457.803 kb on - strand at 457.843 kb on + strand at 457.870 kb on + strand at 457.880 kb on - strand at 457.884 kb on + strand at 457.887 kb on - strand at 457.920 kb on - strand at 457.922 kb on - strand at 457.922 kb on - strand at 457.934 kb on + strand at 457.989 kb on - strand, within lacG at 457.989 kb on - strand, within lacG at 458.005 kb on - strand, within lacG at 458.086 kb on + strand, within lacG at 458.094 kb on - strand, within lacG at 458.124 kb on - strand, within lacG at 458.137 kb on + strand, within lacG at 458.145 kb on + strand, within lacG at 458.161 kb on + strand, within lacG at 458.169 kb on - strand, within lacG at 458.169 kb on - strand, within lacG at 458.254 kb on + strand, within lacG at 458.262 kb on + strand, within lacG at 458.264 kb on + strand, within lacG at 458.264 kb on + strand, within lacG at 458.274 kb on - strand, within lacG at 458.279 kb on + strand, within lacG at 458.279 kb on + strand, within lacG at 458.289 kb on + strand, within lacG at 458.294 kb on + strand, within lacG at 458.294 kb on + strand, within lacG at 458.297 kb on - strand, within lacG at 458.302 kb on - strand, within lacG at 458.424 kb on - strand, within lacG at 458.483 kb on - strand, within lacG at 458.490 kb on + strand, within lacG at 458.545 kb on + strand, within lacG at 458.550 kb on + strand, within lacG at 458.551 kb on + strand, within lacG at 458.551 kb on + strand, within lacG at 458.559 kb on - strand, within lacG at 458.572 kb on + strand, within lacG at 458.625 kb on - strand, within lacG at 458.626 kb on - strand, within lacG at 458.667 kb on + strand at 458.667 kb on + strand at 458.667 kb on + strand at 458.667 kb on + strand at 458.675 kb on - strand at 458.706 kb on - strand at 458.707 kb on + strand at 458.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 456,671 + -2.0 456,671 + -1.6 456,671 + -0.6 456,745 + -1.0 456,805 + -0.8 456,824 - +2.3 456,829 - -0.0 456,959 + -0.0 456,959 + +1.0 456,966 - +0.3 456,967 - -2.4 456,967 - +0.7 456,967 - +0.6 456,969 + +1.2 456,974 + +0.6 456,977 - +0.5 456,982 - +1.0 456,982 - +1.5 456,992 + +1.2 457,044 - +0.6 457,060 + +0.5 457,136 + -0.4 457,137 + +0.8 457,159 + -2.8 457,162 - -1.3 457,164 - +1.0 457,167 - -0.0 457,186 - +1.3 457,205 - +1.0 457,260 - -0.6 457,299 - Synpcc7942_0470 0.16 +0.8 457,304 + Synpcc7942_0470 0.17 +1.6 457,304 + Synpcc7942_0470 0.17 -1.6 457,312 - Synpcc7942_0470 0.19 +0.8 457,312 - Synpcc7942_0470 0.19 -0.6 457,312 - Synpcc7942_0470 0.19 +1.7 457,312 - Synpcc7942_0470 0.19 +2.3 457,312 - Synpcc7942_0470 0.19 +1.3 457,346 + Synpcc7942_0470 0.25 -0.0 457,351 + Synpcc7942_0470 0.26 -1.6 457,385 + Synpcc7942_0470 0.33 +0.3 457,393 - Synpcc7942_0470 0.34 -2.6 457,412 + -2.0 457,441 + -0.0 457,441 + +1.0 457,477 - Synpcc7942_0470 0.50 +0.6 457,479 + Synpcc7942_0470 0.50 +1.1 457,482 - Synpcc7942_0470 0.51 +0.2 457,484 + Synpcc7942_0470 0.51 -1.0 457,490 + Synpcc7942_0470 0.52 +2.5 457,492 - Synpcc7942_0470 0.53 +1.1 457,492 - +1.3 457,508 - Synpcc7942_0470 0.56 +0.4 457,518 + Synpcc7942_0470 0.57 +2.3 457,525 - Synpcc7942_0470 0.59 +2.0 457,553 - Synpcc7942_0470 0.64 +1.2 457,572 + Synpcc7942_0470 0.68 +1.0 457,580 - Synpcc7942_0470 0.69 -0.8 457,582 + Synpcc7942_0470 0.69 -2.2 457,598 + Synpcc7942_0470 0.72 +0.8 457,605 - Synpcc7942_0470 0.74 -0.4 457,605 - Synpcc7942_0470 0.74 +1.1 457,608 + Synpcc7942_0470 0.74 +1.7 457,616 - Synpcc7942_0470 0.76 -3.4 457,647 - Synpcc7942_0470 0.82 -1.6 457,655 + Synpcc7942_0470 0.83 -0.4 457,692 - +2.1 457,692 - +1.0 457,757 - -0.8 457,780 - -0.0 457,785 + +0.7 457,785 + -0.7 457,793 - +1.6 457,803 - -0.2 457,843 + +1.3 457,870 + -2.8 457,880 - +1.6 457,884 + -0.2 457,887 - +1.0 457,920 - -0.0 457,922 - -0.4 457,922 - -0.0 457,934 + -0.6 457,989 - lacG Synpcc7942_0471 0.13 -0.9 457,989 - lacG Synpcc7942_0471 0.13 -0.8 458,005 - lacG Synpcc7942_0471 0.15 -0.9 458,086 + lacG Synpcc7942_0471 0.25 -1.0 458,094 - lacG Synpcc7942_0471 0.26 +0.5 458,124 - lacG Synpcc7942_0471 0.29 +0.2 458,137 + lacG Synpcc7942_0471 0.31 -2.0 458,145 + lacG Synpcc7942_0471 0.32 -4.6 458,161 + lacG Synpcc7942_0471 0.34 +0.0 458,169 - lacG Synpcc7942_0471 0.35 -0.6 458,169 - lacG Synpcc7942_0471 0.35 -0.4 458,254 + lacG Synpcc7942_0471 0.45 +0.3 458,262 + lacG Synpcc7942_0471 0.46 -1.8 458,264 + lacG Synpcc7942_0471 0.46 -1.9 458,264 + lacG Synpcc7942_0471 0.46 +0.6 458,274 - lacG Synpcc7942_0471 0.47 -0.4 458,279 + lacG Synpcc7942_0471 0.48 -2.8 458,279 + lacG Synpcc7942_0471 0.48 -1.4 458,289 + lacG Synpcc7942_0471 0.49 -0.7 458,294 + lacG Synpcc7942_0471 0.50 -1.2 458,294 + lacG Synpcc7942_0471 0.50 -2.6 458,297 - lacG Synpcc7942_0471 0.50 +0.2 458,302 - lacG Synpcc7942_0471 0.51 -1.0 458,424 - lacG Synpcc7942_0471 0.65 -1.6 458,483 - lacG Synpcc7942_0471 0.72 -1.6 458,490 + lacG Synpcc7942_0471 0.73 -0.4 458,545 + lacG Synpcc7942_0471 0.80 -0.4 458,550 + lacG Synpcc7942_0471 0.80 +1.4 458,551 + lacG Synpcc7942_0471 0.81 +1.8 458,551 + lacG Synpcc7942_0471 0.81 -1.0 458,559 - lacG Synpcc7942_0471 0.81 +2.1 458,572 + lacG Synpcc7942_0471 0.83 -2.4 458,625 - lacG Synpcc7942_0471 0.89 -0.8 458,626 - lacG Synpcc7942_0471 0.90 +0.3 458,667 + -2.4 458,667 + -1.6 458,667 + -0.5 458,667 + +2.9 458,675 - -0.0 458,706 - +0.7 458,707 + +0.2 458,714 - +1.0
Or see this region's nucleotide sequence