Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0462

Experiment: Ceftazidime 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0460 and Synpcc7942_0461 are separated by 96 nucleotidesSynpcc7942_0461 and Synpcc7942_0462 are separated by 56 nucleotidesSynpcc7942_0462 and Synpcc7942_0463 overlap by 1 nucleotidesSynpcc7942_0463 and Synpcc7942_0464 are separated by 90 nucleotides Synpcc7942_0460: Synpcc7942_0460 - putative acetyltransferase, at 448,306 to 448,779 _0460 Synpcc7942_0461: Synpcc7942_0461 - hypothetical protein, at 448,876 to 449,313 _0461 Synpcc7942_0462: Synpcc7942_0462 - hypothetical protein, at 449,370 to 449,957 _0462 Synpcc7942_0463: Synpcc7942_0463 - protein tyrosine phosphatase, at 449,957 to 450,448 _0463 Synpcc7942_0464: Synpcc7942_0464 - hypothetical protein, at 450,539 to 450,934 _0464 Position (kb) 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 448.414 kb on + strand, within Synpcc7942_0460at 448.418 kb on + strand, within Synpcc7942_0460at 448.436 kb on - strand, within Synpcc7942_0460at 448.436 kb on - strand, within Synpcc7942_0460at 448.443 kb on - strand, within Synpcc7942_0460at 448.449 kb on - strand, within Synpcc7942_0460at 448.483 kb on - strand, within Synpcc7942_0460at 448.510 kb on + strand, within Synpcc7942_0460at 448.511 kb on + strand, within Synpcc7942_0460at 448.529 kb on - strand, within Synpcc7942_0460at 448.552 kb on - strand, within Synpcc7942_0460at 448.610 kb on - strand, within Synpcc7942_0460at 448.669 kb on + strand, within Synpcc7942_0460at 448.701 kb on + strand, within Synpcc7942_0460at 448.712 kb on + strand, within Synpcc7942_0460at 448.772 kb on - strandat 448.779 kb on - strandat 448.818 kb on - strandat 448.841 kb on - strandat 448.847 kb on + strandat 448.849 kb on + strandat 448.849 kb on + strandat 448.895 kb on + strandat 448.895 kb on + strandat 448.896 kb on + strandat 448.896 kb on + strandat 448.953 kb on - strand, within Synpcc7942_0461at 448.953 kb on - strand, within Synpcc7942_0461at 448.953 kb on - strand, within Synpcc7942_0461at 448.965 kb on - strand, within Synpcc7942_0461at 449.131 kb on + strand, within Synpcc7942_0461at 449.139 kb on - strand, within Synpcc7942_0461at 449.139 kb on - strand, within Synpcc7942_0461at 449.139 kb on - strand, within Synpcc7942_0461at 449.141 kb on + strand, within Synpcc7942_0461at 449.176 kb on + strand, within Synpcc7942_0461at 449.192 kb on + strand, within Synpcc7942_0461at 449.192 kb on + strand, within Synpcc7942_0461at 449.195 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.225 kb on - strand, within Synpcc7942_0461at 449.248 kb on + strand, within Synpcc7942_0461at 449.250 kb on + strand, within Synpcc7942_0461at 449.272 kb on + strandat 449.288 kb on + strandat 449.288 kb on + strandat 449.296 kb on - strandat 449.310 kb on + strandat 449.337 kb on + strandat 449.345 kb on - strandat 449.361 kb on + strandat 449.361 kb on - strandat 449.472 kb on + strand, within Synpcc7942_0462at 449.480 kb on - strand, within Synpcc7942_0462at 449.481 kb on + strand, within Synpcc7942_0462at 449.499 kb on - strand, within Synpcc7942_0462at 449.509 kb on + strand, within Synpcc7942_0462at 449.509 kb on + strand, within Synpcc7942_0462at 449.517 kb on - strand, within Synpcc7942_0462at 449.519 kb on + strand, within Synpcc7942_0462at 449.532 kb on - strand, within Synpcc7942_0462at 449.534 kb on - strand, within Synpcc7942_0462at 449.602 kb on + strand, within Synpcc7942_0462at 449.602 kb on + strand, within Synpcc7942_0462at 449.602 kb on + strand, within Synpcc7942_0462at 449.610 kb on - strand, within Synpcc7942_0462at 449.610 kb on - strand, within Synpcc7942_0462at 449.617 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.645 kb on - strand, within Synpcc7942_0462at 449.645 kb on - strand, within Synpcc7942_0462at 449.652 kb on + strand, within Synpcc7942_0462at 449.664 kb on + strand, within Synpcc7942_0462at 449.671 kb on + strand, within Synpcc7942_0462at 449.672 kb on - strand, within Synpcc7942_0462at 449.672 kb on - strand, within Synpcc7942_0462at 449.683 kb on + strand, within Synpcc7942_0462at 449.685 kb on + strand, within Synpcc7942_0462at 449.731 kb on - strand, within Synpcc7942_0462at 449.736 kb on + strand, within Synpcc7942_0462at 449.805 kb on - strand, within Synpcc7942_0462at 449.810 kb on - strand, within Synpcc7942_0462at 449.876 kb on - strand, within Synpcc7942_0462at 449.886 kb on + strand, within Synpcc7942_0462at 449.886 kb on + strand, within Synpcc7942_0462at 449.887 kb on + strand, within Synpcc7942_0462at 449.894 kb on - strandat 449.900 kb on - strandat 449.967 kb on + strandat 449.967 kb on + strandat 449.967 kb on + strandat 449.975 kb on - strandat 449.975 kb on - strandat 449.975 kb on - strandat 449.975 kb on - strandat 449.981 kb on + strandat 450.048 kb on - strand, within Synpcc7942_0463at 450.060 kb on + strand, within Synpcc7942_0463at 450.068 kb on - strand, within Synpcc7942_0463at 450.070 kb on - strand, within Synpcc7942_0463at 450.131 kb on + strand, within Synpcc7942_0463at 450.132 kb on - strandat 450.165 kb on - strand, within Synpcc7942_0463at 450.189 kb on + strand, within Synpcc7942_0463at 450.216 kb on - strand, within Synpcc7942_0463at 450.237 kb on + strand, within Synpcc7942_0463at 450.237 kb on + strand, within Synpcc7942_0463at 450.245 kb on - strand, within Synpcc7942_0463at 450.245 kb on - strand, within Synpcc7942_0463at 450.245 kb on - strand, within Synpcc7942_0463at 450.247 kb on + strand, within Synpcc7942_0463at 450.250 kb on + strand, within Synpcc7942_0463at 450.358 kb on - strand, within Synpcc7942_0463at 450.358 kb on - strand, within Synpcc7942_0463at 450.405 kb on + strandat 450.408 kb on - strandat 450.423 kb on - strandat 450.425 kb on + strandat 450.433 kb on - strandat 450.483 kb on - strandat 450.508 kb on - strandat 450.508 kb on - strandat 450.508 kb on - strandat 450.508 kb on - strandat 450.528 kb on - strandat 450.544 kb on + strandat 450.554 kb on + strandat 450.618 kb on + strand, within Synpcc7942_0464at 450.622 kb on - strand, within Synpcc7942_0464at 450.641 kb on - strand, within Synpcc7942_0464at 450.644 kb on + strand, within Synpcc7942_0464at 450.660 kb on + strand, within Synpcc7942_0464at 450.668 kb on - strand, within Synpcc7942_0464at 450.693 kb on + strand, within Synpcc7942_0464at 450.708 kb on - strand, within Synpcc7942_0464at 450.716 kb on + strand, within Synpcc7942_0464at 450.718 kb on + strand, within Synpcc7942_0464at 450.737 kb on + strand, within Synpcc7942_0464at 450.737 kb on + strand, within Synpcc7942_0464at 450.737 kb on + strand, within Synpcc7942_0464at 450.738 kb on + strand, within Synpcc7942_0464at 450.738 kb on + strand, within Synpcc7942_0464at 450.742 kb on + strand, within Synpcc7942_0464at 450.745 kb on - strand, within Synpcc7942_0464at 450.745 kb on - strand, within Synpcc7942_0464at 450.750 kb on - strand, within Synpcc7942_0464at 450.765 kb on + strand, within Synpcc7942_0464at 450.767 kb on + strand, within Synpcc7942_0464at 450.777 kb on + strand, within Synpcc7942_0464at 450.777 kb on + strand, within Synpcc7942_0464at 450.805 kb on - strand, within Synpcc7942_0464at 450.837 kb on - strand, within Synpcc7942_0464at 450.861 kb on - strand, within Synpcc7942_0464at 450.861 kb on - strand, within Synpcc7942_0464

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml
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448,414 + Synpcc7942_0460 0.23 -1.2
448,418 + Synpcc7942_0460 0.24 +0.6
448,436 - Synpcc7942_0460 0.27 +0.4
448,436 - Synpcc7942_0460 0.27 -3.0
448,443 - Synpcc7942_0460 0.29 +1.6
448,449 - Synpcc7942_0460 0.30 +0.1
448,483 - Synpcc7942_0460 0.37 +0.7
448,510 + Synpcc7942_0460 0.43 +0.6
448,511 + Synpcc7942_0460 0.43 -1.0
448,529 - Synpcc7942_0460 0.47 +0.6
448,552 - Synpcc7942_0460 0.52 +1.1
448,610 - Synpcc7942_0460 0.64 +0.9
448,669 + Synpcc7942_0460 0.77 -2.0
448,701 + Synpcc7942_0460 0.83 +1.1
448,712 + Synpcc7942_0460 0.86 -2.5
448,772 - +2.8
448,779 - +0.3
448,818 - +1.6
448,841 - -0.3
448,847 + -2.2
448,849 + +0.2
448,849 + -1.0
448,895 + +1.1
448,895 + -1.6
448,896 + +0.3
448,896 + -2.7
448,953 - Synpcc7942_0461 0.18 +0.2
448,953 - Synpcc7942_0461 0.18 +1.2
448,953 - Synpcc7942_0461 0.18 +0.4
448,965 - Synpcc7942_0461 0.20 -0.4
449,131 + Synpcc7942_0461 0.58 +2.0
449,139 - Synpcc7942_0461 0.60 +0.2
449,139 - Synpcc7942_0461 0.60 +0.6
449,139 - Synpcc7942_0461 0.60 -0.7
449,141 + Synpcc7942_0461 0.61 -0.9
449,176 + Synpcc7942_0461 0.68 -1.0
449,192 + Synpcc7942_0461 0.72 -0.7
449,192 + Synpcc7942_0461 0.72 -1.4
449,195 - Synpcc7942_0461 0.73 -0.4
449,200 - Synpcc7942_0461 0.74 -2.4
449,200 - Synpcc7942_0461 0.74 -0.0
449,200 - Synpcc7942_0461 0.74 -0.0
449,200 - Synpcc7942_0461 0.74 +0.8
449,200 - Synpcc7942_0461 0.74 -1.9
449,200 - Synpcc7942_0461 0.74 +1.5
449,200 - Synpcc7942_0461 0.74 -0.8
449,200 - Synpcc7942_0461 0.74 +3.1
449,225 - Synpcc7942_0461 0.80 -0.0
449,248 + Synpcc7942_0461 0.85 -3.5
449,250 + Synpcc7942_0461 0.85 +1.3
449,272 + +1.6
449,288 + +1.0
449,288 + -2.4
449,296 - -1.0
449,310 + -0.0
449,337 + -0.4
449,345 - -0.0
449,361 + -3.0
449,361 - +1.0
449,472 + Synpcc7942_0462 0.17 +1.0
449,480 - Synpcc7942_0462 0.19 +0.9
449,481 + Synpcc7942_0462 0.19 -0.0
449,499 - Synpcc7942_0462 0.22 +1.4
449,509 + Synpcc7942_0462 0.24 +0.8
449,509 + Synpcc7942_0462 0.24 -2.8
449,517 - Synpcc7942_0462 0.25 +1.2
449,519 + Synpcc7942_0462 0.25 +1.6
449,532 - Synpcc7942_0462 0.28 +1.2
449,534 - Synpcc7942_0462 0.28 -1.0
449,602 + Synpcc7942_0462 0.39 +0.3
449,602 + Synpcc7942_0462 0.39 -1.8
449,602 + Synpcc7942_0462 0.39 -1.6
449,610 - Synpcc7942_0462 0.41 -2.2
449,610 - Synpcc7942_0462 0.41 +1.2
449,617 + Synpcc7942_0462 0.42 -2.4
449,637 + Synpcc7942_0462 0.45 -1.0
449,637 + Synpcc7942_0462 0.45 +0.6
449,637 + Synpcc7942_0462 0.45 +1.1
449,637 + Synpcc7942_0462 0.45 +0.5
449,645 - Synpcc7942_0462 0.47 +0.5
449,645 - Synpcc7942_0462 0.47 -0.4
449,652 + Synpcc7942_0462 0.48 +1.0
449,664 + Synpcc7942_0462 0.50 +2.8
449,671 + Synpcc7942_0462 0.51 +1.8
449,672 - Synpcc7942_0462 0.51 +0.9
449,672 - Synpcc7942_0462 0.51 +0.7
449,683 + Synpcc7942_0462 0.53 +1.5
449,685 + Synpcc7942_0462 0.54 +0.3
449,731 - Synpcc7942_0462 0.61 +1.0
449,736 + Synpcc7942_0462 0.62 -0.0
449,805 - Synpcc7942_0462 0.74 -1.6
449,810 - Synpcc7942_0462 0.75 +0.7
449,876 - Synpcc7942_0462 0.86 +2.8
449,886 + Synpcc7942_0462 0.88 +0.7
449,886 + Synpcc7942_0462 0.88 +0.9
449,887 + Synpcc7942_0462 0.88 -0.1
449,894 - +2.0
449,900 - +0.9
449,967 + +0.6
449,967 + +1.2
449,967 + +0.8
449,975 - +0.3
449,975 - -0.1
449,975 - +0.6
449,975 - +2.8
449,981 + +0.9
450,048 - Synpcc7942_0463 0.18 +1.1
450,060 + Synpcc7942_0463 0.21 -0.7
450,068 - Synpcc7942_0463 0.23 +1.0
450,070 - Synpcc7942_0463 0.23 +0.2
450,131 + Synpcc7942_0463 0.35 +0.0
450,132 - -0.0
450,165 - Synpcc7942_0463 0.42 +0.2
450,189 + Synpcc7942_0463 0.47 -1.6
450,216 - Synpcc7942_0463 0.53 -0.4
450,237 + Synpcc7942_0463 0.57 +1.3
450,237 + Synpcc7942_0463 0.57 +1.1
450,245 - Synpcc7942_0463 0.59 -2.8
450,245 - Synpcc7942_0463 0.59 +2.1
450,245 - Synpcc7942_0463 0.59 +0.5
450,247 + Synpcc7942_0463 0.59 -0.6
450,250 + Synpcc7942_0463 0.60 -0.0
450,358 - Synpcc7942_0463 0.82 +0.6
450,358 - Synpcc7942_0463 0.82 -0.6
450,405 + +2.1
450,408 - +2.0
450,423 - -1.6
450,425 + +0.1
450,433 - -0.6
450,483 - -2.0
450,508 - -0.0
450,508 - -2.0
450,508 - +0.6
450,508 - +1.4
450,528 - -0.3
450,544 + -1.6
450,554 + -0.0
450,618 + Synpcc7942_0464 0.20 -1.5
450,622 - Synpcc7942_0464 0.21 -3.0
450,641 - Synpcc7942_0464 0.26 -1.6
450,644 + Synpcc7942_0464 0.27 -0.6
450,660 + Synpcc7942_0464 0.31 -2.6
450,668 - Synpcc7942_0464 0.33 +0.3
450,693 + Synpcc7942_0464 0.39 -2.5
450,708 - Synpcc7942_0464 0.43 -2.6
450,716 + Synpcc7942_0464 0.45 -2.0
450,718 + Synpcc7942_0464 0.45 +1.6
450,737 + Synpcc7942_0464 0.50 -1.6
450,737 + Synpcc7942_0464 0.50 -2.3
450,737 + Synpcc7942_0464 0.50 -1.7
450,738 + Synpcc7942_0464 0.50 -3.1
450,738 + Synpcc7942_0464 0.50 -1.1
450,742 + Synpcc7942_0464 0.51 -1.0
450,745 - Synpcc7942_0464 0.52 -1.0
450,745 - Synpcc7942_0464 0.52 -1.0
450,750 - Synpcc7942_0464 0.53 -2.3
450,765 + Synpcc7942_0464 0.57 -0.9
450,767 + Synpcc7942_0464 0.58 -2.0
450,777 + Synpcc7942_0464 0.60 -2.1
450,777 + Synpcc7942_0464 0.60 -1.0
450,805 - Synpcc7942_0464 0.67 -2.8
450,837 - Synpcc7942_0464 0.75 -2.0
450,861 - Synpcc7942_0464 0.81 -3.7
450,861 - Synpcc7942_0464 0.81 -0.0

Or see this region's nucleotide sequence