Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oppC and rpsN are separated by 80 nucleotides rpsN and nth are separated by 29 nucleotides nth and Synpcc7942_0448 overlap by 4 nucleotides
Synpcc7942_0445: oppC - ABC-type dipeptide/oligopeptide/nickel transport systems permease components-like, at 435,383 to 436,438
oppC
Synpcc7942_0446: rpsN - 30S ribosomal protein S14, at 436,519 to 436,821
rpsN
Synpcc7942_0447: nth - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III, at 436,851 to 437,537
nth
Synpcc7942_0448: Synpcc7942_0448 - YUP8H12.25 {{Arabidopsis thaliana}}-type protein. Metallo peptidase. MEROPS family M50B, at 437,534 to 438,628
_0448
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 435.865 kb on + strand, within oppC at 435.876 kb on + strand, within oppC at 435.968 kb on + strand, within oppC at 435.969 kb on + strand, within oppC at 435.976 kb on - strand, within oppC at 436.013 kb on + strand, within oppC at 436.024 kb on + strand, within oppC at 436.028 kb on + strand, within oppC at 436.043 kb on + strand, within oppC at 436.056 kb on + strand, within oppC at 436.064 kb on - strand, within oppC at 436.064 kb on - strand, within oppC at 436.081 kb on + strand, within oppC at 436.089 kb on - strand, within oppC at 436.089 kb on - strand, within oppC at 436.089 kb on - strand, within oppC at 436.112 kb on + strand, within oppC at 436.172 kb on + strand, within oppC at 436.189 kb on - strand, within oppC at 436.233 kb on + strand, within oppC at 436.233 kb on + strand, within oppC at 436.233 kb on + strand, within oppC at 436.241 kb on - strand, within oppC at 436.241 kb on - strand, within oppC at 436.246 kb on + strand, within oppC at 436.261 kb on - strand, within oppC at 436.279 kb on + strand, within oppC at 436.308 kb on - strand, within oppC at 436.320 kb on + strand, within oppC at 436.327 kb on + strand, within oppC at 436.328 kb on - strand, within oppC at 436.328 kb on - strand, within oppC at 436.334 kb on - strand at 436.335 kb on - strand at 436.336 kb on + strand at 436.336 kb on + strand at 436.358 kb on - strand at 436.368 kb on - strand at 436.415 kb on - strand at 436.434 kb on + strand at 436.889 kb on - strand at 436.918 kb on + strand at 436.950 kb on - strand, within nth at 436.950 kb on - strand, within nth at 436.975 kb on - strand, within nth at 437.036 kb on + strand, within nth at 437.041 kb on + strand, within nth at 437.108 kb on + strand at 437.139 kb on + strand, within nth at 437.139 kb on + strand, within nth at 437.139 kb on + strand at 437.147 kb on - strand, within nth at 437.147 kb on - strand at 437.147 kb on - strand, within nth at 437.147 kb on - strand, within nth at 437.152 kb on - strand, within nth at 437.173 kb on - strand, within nth at 437.174 kb on + strand, within nth at 437.218 kb on + strand, within nth at 437.225 kb on + strand, within nth at 437.236 kb on - strand, within nth at 437.300 kb on - strand, within nth at 437.339 kb on + strand, within nth at 437.339 kb on + strand, within nth at 437.467 kb on + strand, within nth at 437.467 kb on + strand, within nth at 437.467 kb on + strand, within nth at 437.475 kb on - strand at 437.475 kb on - strand at 437.477 kb on + strand at 437.477 kb on + strand at 437.485 kb on - strand at 437.528 kb on - strand at 437.545 kb on - strand at 437.556 kb on + strand at 437.564 kb on - strand at 437.564 kb on - strand at 437.604 kb on + strand at 437.604 kb on + strand at 437.615 kb on + strand at 437.628 kb on - strand at 437.629 kb on + strand at 437.630 kb on + strand at 437.637 kb on - strand at 437.666 kb on + strand, within Synpcc7942_0448 at 437.666 kb on + strand, within Synpcc7942_0448 at 437.674 kb on - strand, within Synpcc7942_0448 at 437.674 kb on - strand, within Synpcc7942_0448 at 437.674 kb on - strand, within Synpcc7942_0448 at 437.674 kb on - strand, within Synpcc7942_0448 at 437.698 kb on - strand, within Synpcc7942_0448 at 437.730 kb on + strand, within Synpcc7942_0448 at 437.732 kb on + strand, within Synpcc7942_0448 at 437.754 kb on - strand, within Synpcc7942_0448 at 437.773 kb on + strand, within Synpcc7942_0448 at 437.834 kb on + strand, within Synpcc7942_0448 at 437.834 kb on + strand, within Synpcc7942_0448 at 437.842 kb on - strand, within Synpcc7942_0448 at 437.878 kb on + strand, within Synpcc7942_0448 at 437.886 kb on - strand, within Synpcc7942_0448 at 437.893 kb on - strand, within Synpcc7942_0448 at 437.945 kb on + strand, within Synpcc7942_0448 at 438.110 kb on - strand, within Synpcc7942_0448 at 438.124 kb on + strand, within Synpcc7942_0448 at 438.132 kb on - strand, within Synpcc7942_0448 at 438.151 kb on + strand, within Synpcc7942_0448 at 438.154 kb on - strand, within Synpcc7942_0448 at 438.154 kb on - strand, within Synpcc7942_0448 at 438.161 kb on + strand, within Synpcc7942_0448 at 438.161 kb on + strand, within Synpcc7942_0448 at 438.161 kb on + strand, within Synpcc7942_0448 at 438.169 kb on - strand, within Synpcc7942_0448 at 438.184 kb on - strand, within Synpcc7942_0448 at 438.248 kb on - strand, within Synpcc7942_0448 at 438.344 kb on + strand, within Synpcc7942_0448 at 438.347 kb on - strand, within Synpcc7942_0448 at 438.359 kb on + strand, within Synpcc7942_0448 at 438.359 kb on + strand, within Synpcc7942_0448 at 438.367 kb on - strand, within Synpcc7942_0448 at 438.385 kb on + strand, within Synpcc7942_0448 at 438.425 kb on - strand, within Synpcc7942_0448 at 438.458 kb on + strand, within Synpcc7942_0448 at 438.460 kb on - strand, within Synpcc7942_0448 at 438.466 kb on + strand, within Synpcc7942_0448 at 438.484 kb on + strand, within Synpcc7942_0448 at 438.486 kb on + strand, within Synpcc7942_0448 at 438.497 kb on + strand, within Synpcc7942_0448 at 438.497 kb on + strand, within Synpcc7942_0448 at 438.497 kb on + strand, within Synpcc7942_0448 at 438.505 kb on - strand, within Synpcc7942_0448 at 438.534 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 435,865 + oppC Synpcc7942_0445 0.46 +1.7 435,876 + oppC Synpcc7942_0445 0.47 +0.8 435,968 + oppC Synpcc7942_0445 0.55 +1.3 435,969 + oppC Synpcc7942_0445 0.55 +0.4 435,976 - oppC Synpcc7942_0445 0.56 -0.3 436,013 + oppC Synpcc7942_0445 0.60 -0.7 436,024 + oppC Synpcc7942_0445 0.61 -1.0 436,028 + oppC Synpcc7942_0445 0.61 +1.0 436,043 + oppC Synpcc7942_0445 0.62 +0.3 436,056 + oppC Synpcc7942_0445 0.64 -0.6 436,064 - oppC Synpcc7942_0445 0.64 +1.7 436,064 - oppC Synpcc7942_0445 0.64 -1.6 436,081 + oppC Synpcc7942_0445 0.66 +0.8 436,089 - oppC Synpcc7942_0445 0.67 +1.2 436,089 - oppC Synpcc7942_0445 0.67 +0.9 436,089 - oppC Synpcc7942_0445 0.67 +0.3 436,112 + oppC Synpcc7942_0445 0.69 +0.1 436,172 + oppC Synpcc7942_0445 0.75 -0.6 436,189 - oppC Synpcc7942_0445 0.76 +0.7 436,233 + oppC Synpcc7942_0445 0.80 -1.6 436,233 + oppC Synpcc7942_0445 0.80 +0.7 436,233 + oppC Synpcc7942_0445 0.80 -0.8 436,241 - oppC Synpcc7942_0445 0.81 +1.2 436,241 - oppC Synpcc7942_0445 0.81 -2.6 436,246 + oppC Synpcc7942_0445 0.82 +0.3 436,261 - oppC Synpcc7942_0445 0.83 -1.6 436,279 + oppC Synpcc7942_0445 0.85 +0.4 436,308 - oppC Synpcc7942_0445 0.88 -2.8 436,320 + oppC Synpcc7942_0445 0.89 -1.0 436,327 + oppC Synpcc7942_0445 0.89 +0.6 436,328 - oppC Synpcc7942_0445 0.89 +1.1 436,328 - oppC Synpcc7942_0445 0.89 +2.4 436,334 - +1.1 436,335 - -2.3 436,336 + -0.0 436,336 + +2.0 436,358 - -1.2 436,368 - -0.0 436,415 - +1.6 436,434 + +1.4 436,889 - +0.4 436,918 + +1.0 436,950 - nth Synpcc7942_0447 0.14 -0.3 436,950 - nth Synpcc7942_0447 0.14 -2.0 436,975 - nth Synpcc7942_0447 0.18 +1.0 437,036 + nth Synpcc7942_0447 0.27 +0.1 437,041 + nth Synpcc7942_0447 0.28 +4.2 437,108 + -0.6 437,139 + nth Synpcc7942_0447 0.42 -1.3 437,139 + nth Synpcc7942_0447 0.42 -0.0 437,139 + +3.0 437,147 - nth Synpcc7942_0447 0.43 +1.8 437,147 - -1.0 437,147 - nth Synpcc7942_0447 0.43 -0.0 437,147 - nth Synpcc7942_0447 0.43 +0.2 437,152 - nth Synpcc7942_0447 0.44 -1.0 437,173 - nth Synpcc7942_0447 0.47 -0.0 437,174 + nth Synpcc7942_0447 0.47 +0.5 437,218 + nth Synpcc7942_0447 0.53 +1.5 437,225 + nth Synpcc7942_0447 0.54 +0.6 437,236 - nth Synpcc7942_0447 0.56 +1.5 437,300 - nth Synpcc7942_0447 0.65 -0.5 437,339 + nth Synpcc7942_0447 0.71 +1.7 437,339 + nth Synpcc7942_0447 0.71 +3.4 437,467 + nth Synpcc7942_0447 0.90 +1.9 437,467 + nth Synpcc7942_0447 0.90 +1.1 437,467 + nth Synpcc7942_0447 0.90 +0.7 437,475 - +0.9 437,475 - +0.3 437,477 + -0.7 437,477 + +2.6 437,485 - -1.0 437,528 - -2.0 437,545 - -0.7 437,556 + +0.9 437,564 - +1.0 437,564 - +0.1 437,604 + +0.6 437,604 + -1.6 437,615 + -1.8 437,628 - +1.0 437,629 + -2.0 437,630 + +1.0 437,637 - +0.1 437,666 + Synpcc7942_0448 0.12 -0.0 437,666 + Synpcc7942_0448 0.12 +0.1 437,674 - Synpcc7942_0448 0.13 -0.3 437,674 - Synpcc7942_0448 0.13 -2.6 437,674 - Synpcc7942_0448 0.13 -2.3 437,674 - Synpcc7942_0448 0.13 +1.7 437,698 - Synpcc7942_0448 0.15 +0.8 437,730 + Synpcc7942_0448 0.18 -1.1 437,732 + Synpcc7942_0448 0.18 -2.0 437,754 - Synpcc7942_0448 0.20 -2.2 437,773 + Synpcc7942_0448 0.22 +0.4 437,834 + Synpcc7942_0448 0.27 +1.0 437,834 + Synpcc7942_0448 0.27 +0.2 437,842 - Synpcc7942_0448 0.28 +1.1 437,878 + Synpcc7942_0448 0.31 -0.9 437,886 - Synpcc7942_0448 0.32 -1.2 437,893 - Synpcc7942_0448 0.33 +1.2 437,945 + Synpcc7942_0448 0.38 -1.0 438,110 - Synpcc7942_0448 0.53 -0.0 438,124 + Synpcc7942_0448 0.54 +0.6 438,132 - Synpcc7942_0448 0.55 -2.8 438,151 + Synpcc7942_0448 0.56 +1.0 438,154 - Synpcc7942_0448 0.57 +2.1 438,154 - Synpcc7942_0448 0.57 -0.5 438,161 + Synpcc7942_0448 0.57 -0.6 438,161 + Synpcc7942_0448 0.57 +1.9 438,161 + Synpcc7942_0448 0.57 -2.0 438,169 - Synpcc7942_0448 0.58 +0.4 438,184 - Synpcc7942_0448 0.59 +0.3 438,248 - Synpcc7942_0448 0.65 +0.4 438,344 + Synpcc7942_0448 0.74 +1.1 438,347 - Synpcc7942_0448 0.74 +0.4 438,359 + Synpcc7942_0448 0.75 +2.0 438,359 + Synpcc7942_0448 0.75 -2.6 438,367 - Synpcc7942_0448 0.76 +0.2 438,385 + Synpcc7942_0448 0.78 +1.0 438,425 - Synpcc7942_0448 0.81 +2.4 438,458 + Synpcc7942_0448 0.84 +0.5 438,460 - Synpcc7942_0448 0.85 -2.8 438,466 + Synpcc7942_0448 0.85 +0.5 438,484 + Synpcc7942_0448 0.87 +0.5 438,486 + Synpcc7942_0448 0.87 +0.6 438,497 + Synpcc7942_0448 0.88 +1.3 438,497 + Synpcc7942_0448 0.88 -1.0 438,497 + Synpcc7942_0448 0.88 +0.7 438,505 - Synpcc7942_0448 0.89 +1.3 438,534 + +0.6
Or see this region's nucleotide sequence