Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuA and Synpcc7942_0429 are separated by 70 nucleotides Synpcc7942_0429 and dxs are separated by 161 nucleotides
Synpcc7942_0428: leuA - putative alpha-isopropylmalate/homocitrate synthase family transferase, at 416,982 to 418,610
leuA
Synpcc7942_0429: Synpcc7942_0429 - hypothetical protein, at 418,681 to 419,220
_0429
Synpcc7942_0430: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 419,382 to 421,292
dxs
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 417.997 kb on - strand, within leuA at 418.095 kb on - strand, within leuA at 418.166 kb on - strand, within leuA at 418.439 kb on + strand, within leuA at 418.623 kb on + strand at 418.636 kb on + strand at 418.647 kb on + strand at 418.678 kb on + strand at 418.686 kb on - strand at 418.745 kb on - strand, within Synpcc7942_0429 at 418.747 kb on - strand, within Synpcc7942_0429 at 418.747 kb on - strand, within Synpcc7942_0429 at 418.764 kb on - strand, within Synpcc7942_0429 at 418.810 kb on + strand, within Synpcc7942_0429 at 418.818 kb on - strand, within Synpcc7942_0429 at 418.833 kb on + strand, within Synpcc7942_0429 at 418.863 kb on + strand, within Synpcc7942_0429 at 418.863 kb on + strand, within Synpcc7942_0429 at 418.870 kb on + strand, within Synpcc7942_0429 at 418.870 kb on - strand, within Synpcc7942_0429 at 418.901 kb on + strand, within Synpcc7942_0429 at 418.911 kb on + strand, within Synpcc7942_0429 at 418.948 kb on + strand, within Synpcc7942_0429 at 418.949 kb on + strand, within Synpcc7942_0429 at 419.001 kb on + strand, within Synpcc7942_0429 at 419.022 kb on - strand, within Synpcc7942_0429 at 419.027 kb on - strand, within Synpcc7942_0429 at 419.078 kb on + strand, within Synpcc7942_0429 at 419.092 kb on - strand, within Synpcc7942_0429 at 419.092 kb on - strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.142 kb on + strand, within Synpcc7942_0429 at 419.156 kb on + strand, within Synpcc7942_0429 at 419.158 kb on - strand, within Synpcc7942_0429 at 419.160 kb on + strand, within Synpcc7942_0429 at 419.160 kb on - strand, within Synpcc7942_0429 at 419.209 kb on - strand at 419.235 kb on + strand at 419.280 kb on + strand at 419.300 kb on + strand at 419.300 kb on + strand at 419.328 kb on + strand at 419.330 kb on + strand at 419.332 kb on - strand at 419.384 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 417,997 - leuA Synpcc7942_0428 0.62 -1.6 418,095 - leuA Synpcc7942_0428 0.68 -3.2 418,166 - leuA Synpcc7942_0428 0.73 -1.0 418,439 + leuA Synpcc7942_0428 0.89 -2.0 418,623 + +2.6 418,636 + +0.6 418,647 + -1.6 418,678 + -1.0 418,686 - +0.3 418,745 - Synpcc7942_0429 0.12 -2.4 418,747 - Synpcc7942_0429 0.12 +2.4 418,747 - Synpcc7942_0429 0.12 +1.4 418,764 - Synpcc7942_0429 0.15 +0.2 418,810 + Synpcc7942_0429 0.24 +0.3 418,818 - Synpcc7942_0429 0.25 +0.2 418,833 + Synpcc7942_0429 0.28 -1.0 418,863 + Synpcc7942_0429 0.34 -1.0 418,863 + Synpcc7942_0429 0.34 -0.6 418,870 + Synpcc7942_0429 0.35 +1.6 418,870 - Synpcc7942_0429 0.35 +0.5 418,901 + Synpcc7942_0429 0.41 +1.8 418,911 + Synpcc7942_0429 0.43 +2.0 418,948 + Synpcc7942_0429 0.49 -0.7 418,949 + Synpcc7942_0429 0.50 +3.0 419,001 + Synpcc7942_0429 0.59 -0.0 419,022 - Synpcc7942_0429 0.63 +1.6 419,027 - Synpcc7942_0429 0.64 -0.0 419,078 + Synpcc7942_0429 0.74 +0.7 419,092 - Synpcc7942_0429 0.76 +0.9 419,092 - Synpcc7942_0429 0.76 -0.0 419,094 + Synpcc7942_0429 0.76 -1.6 419,094 + Synpcc7942_0429 0.76 -1.6 419,094 + Synpcc7942_0429 0.76 +1.6 419,094 + Synpcc7942_0429 0.76 +0.6 419,102 - Synpcc7942_0429 0.78 +0.4 419,102 - Synpcc7942_0429 0.78 +1.0 419,102 - Synpcc7942_0429 0.78 +1.0 419,142 + Synpcc7942_0429 0.85 +1.0 419,156 + Synpcc7942_0429 0.88 +1.0 419,158 - Synpcc7942_0429 0.88 +1.2 419,160 + Synpcc7942_0429 0.89 +2.1 419,160 - Synpcc7942_0429 0.89 +0.5 419,209 - -0.0 419,235 + -0.4 419,280 + +0.7 419,300 + +0.9 419,300 + +1.0 419,328 + +0.6 419,330 + -2.7 419,332 - -2.0 419,384 - +0.9
Or see this region's nucleotide sequence