Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0422 and Synpcc7942_0423 are separated by 106 nucleotides Synpcc7942_0423 and psbAI are separated by 258 nucleotides
Synpcc7942_0422: Synpcc7942_0422 - hypothetical protein, at 412,147 to 413,289
_0422
Synpcc7942_0423: Synpcc7942_0423 - hypothetical protein, at 413,396 to 413,614
_0423
Synpcc7942_0424: psbAI - photosystem q(b) protein, at 413,873 to 414,955
psbAI
Position (kb) 413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 412.422 kb on + strand, within Synpcc7942_0422 at 412.489 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.514 kb on + strand, within Synpcc7942_0422 at 412.522 kb on + strand, within Synpcc7942_0422 at 412.562 kb on + strand, within Synpcc7942_0422 at 412.567 kb on - strand, within Synpcc7942_0422 at 412.569 kb on + strand, within Synpcc7942_0422 at 412.576 kb on - strand, within Synpcc7942_0422 at 412.594 kb on + strand, within Synpcc7942_0422 at 412.647 kb on + strand, within Synpcc7942_0422 at 412.655 kb on + strand, within Synpcc7942_0422 at 412.702 kb on + strand, within Synpcc7942_0422 at 412.710 kb on + strand, within Synpcc7942_0422 at 412.740 kb on - strand at 412.750 kb on - strand, within Synpcc7942_0422 at 412.755 kb on - strand, within Synpcc7942_0422 at 412.761 kb on - strand, within Synpcc7942_0422 at 412.774 kb on - strand, within Synpcc7942_0422 at 412.790 kb on + strand, within Synpcc7942_0422 at 412.790 kb on + strand, within Synpcc7942_0422 at 412.790 kb on + strand, within Synpcc7942_0422 at 412.790 kb on + strand, within Synpcc7942_0422 at 412.791 kb on - strand, within Synpcc7942_0422 at 412.791 kb on - strand, within Synpcc7942_0422 at 412.798 kb on - strand, within Synpcc7942_0422 at 412.798 kb on - strand, within Synpcc7942_0422 at 412.839 kb on - strand, within Synpcc7942_0422 at 412.860 kb on - strand, within Synpcc7942_0422 at 412.863 kb on - strand, within Synpcc7942_0422 at 412.893 kb on - strand, within Synpcc7942_0422 at 412.918 kb on - strand, within Synpcc7942_0422 at 412.945 kb on + strand, within Synpcc7942_0422 at 412.955 kb on + strand, within Synpcc7942_0422 at 412.963 kb on - strand, within Synpcc7942_0422 at 412.995 kb on + strand, within Synpcc7942_0422 at 413.027 kb on + strand, within Synpcc7942_0422 at 413.049 kb on - strand, within Synpcc7942_0422 at 413.049 kb on - strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.102 kb on - strand, within Synpcc7942_0422 at 413.103 kb on - strand, within Synpcc7942_0422 at 413.107 kb on - strand, within Synpcc7942_0422 at 413.109 kb on + strand, within Synpcc7942_0422 at 413.117 kb on - strand at 413.128 kb on + strand, within Synpcc7942_0422 at 413.136 kb on - strand, within Synpcc7942_0422 at 413.219 kb on + strand at 413.275 kb on - strand at 413.275 kb on - strand at 413.332 kb on - strand at 413.336 kb on + strand at 413.338 kb on + strand at 413.341 kb on - strand at 413.360 kb on - strand at 413.360 kb on - strand at 413.362 kb on + strand at 413.363 kb on - strand at 413.370 kb on - strand at 413.373 kb on + strand at 413.373 kb on + strand at 413.397 kb on + strand at 413.400 kb on - strand at 413.400 kb on - strand at 413.400 kb on - strand at 413.423 kb on + strand, within Synpcc7942_0423 at 413.460 kb on + strand, within Synpcc7942_0423 at 413.479 kb on + strand, within Synpcc7942_0423 at 413.487 kb on - strand, within Synpcc7942_0423 at 413.506 kb on + strand, within Synpcc7942_0423 at 413.571 kb on + strand, within Synpcc7942_0423 at 413.611 kb on + strand at 413.624 kb on + strand at 413.624 kb on + strand at 413.632 kb on - strand at 413.659 kb on - strand at 413.682 kb on + strand at 413.684 kb on + strand at 413.690 kb on - strand at 413.692 kb on + strand at 413.692 kb on + strand at 413.700 kb on - strand at 413.700 kb on - strand at 413.995 kb on + strand at 414.065 kb on - strand, within psbAI at 414.068 kb on + strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.190 kb on + strand, within psbAI at 414.283 kb on + strand, within psbAI at 414.298 kb on + strand, within psbAI at 414.325 kb on - strand, within psbAI
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 412,422 + Synpcc7942_0422 0.24 -1.1 412,489 + Synpcc7942_0422 0.30 +1.7 412,499 + Synpcc7942_0422 0.31 -1.1 412,499 + Synpcc7942_0422 0.31 +0.1 412,507 - Synpcc7942_0422 0.31 -1.4 412,507 - Synpcc7942_0422 0.31 -0.5 412,507 - Synpcc7942_0422 0.31 +0.4 412,514 + Synpcc7942_0422 0.32 -1.6 412,522 + Synpcc7942_0422 0.33 +1.5 412,562 + Synpcc7942_0422 0.36 +0.5 412,567 - Synpcc7942_0422 0.37 +2.0 412,569 + Synpcc7942_0422 0.37 +1.9 412,576 - Synpcc7942_0422 0.38 +1.0 412,594 + Synpcc7942_0422 0.39 -0.5 412,647 + Synpcc7942_0422 0.44 -0.8 412,655 + Synpcc7942_0422 0.44 +0.2 412,702 + Synpcc7942_0422 0.49 +0.6 412,710 + Synpcc7942_0422 0.49 -1.6 412,740 - -0.1 412,750 - Synpcc7942_0422 0.53 +0.9 412,755 - Synpcc7942_0422 0.53 +0.2 412,761 - Synpcc7942_0422 0.54 +1.1 412,774 - Synpcc7942_0422 0.55 +1.6 412,790 + Synpcc7942_0422 0.56 +0.9 412,790 + Synpcc7942_0422 0.56 +1.5 412,790 + Synpcc7942_0422 0.56 +0.7 412,790 + Synpcc7942_0422 0.56 +0.1 412,791 - Synpcc7942_0422 0.56 +1.0 412,791 - Synpcc7942_0422 0.56 +1.1 412,798 - Synpcc7942_0422 0.57 +1.2 412,798 - Synpcc7942_0422 0.57 +0.2 412,839 - Synpcc7942_0422 0.61 +0.4 412,860 - Synpcc7942_0422 0.62 +1.3 412,863 - Synpcc7942_0422 0.63 +2.9 412,893 - Synpcc7942_0422 0.65 -1.2 412,918 - Synpcc7942_0422 0.67 +0.6 412,945 + Synpcc7942_0422 0.70 -1.4 412,955 + Synpcc7942_0422 0.71 -1.6 412,963 - Synpcc7942_0422 0.71 -0.3 412,995 + Synpcc7942_0422 0.74 +0.9 413,027 + Synpcc7942_0422 0.77 +0.5 413,049 - Synpcc7942_0422 0.79 -1.4 413,049 - Synpcc7942_0422 0.79 -1.1 413,095 + Synpcc7942_0422 0.83 -2.9 413,095 + Synpcc7942_0422 0.83 -0.1 413,095 + Synpcc7942_0422 0.83 +1.7 413,095 + Synpcc7942_0422 0.83 -0.4 413,102 - Synpcc7942_0422 0.84 +1.2 413,103 - Synpcc7942_0422 0.84 -2.1 413,107 - Synpcc7942_0422 0.84 +0.9 413,109 + Synpcc7942_0422 0.84 +1.2 413,117 - -0.0 413,128 + Synpcc7942_0422 0.86 -0.0 413,136 - Synpcc7942_0422 0.87 +0.6 413,219 + +0.5 413,275 - +0.6 413,275 - +0.5 413,332 - +1.7 413,336 + -0.0 413,338 + -0.0 413,341 - +1.3 413,360 - -0.1 413,360 - +0.9 413,362 + -2.9 413,363 - -0.0 413,370 - -0.4 413,373 + +1.8 413,373 + -1.0 413,397 + -2.0 413,400 - -0.0 413,400 - +1.0 413,400 - +1.0 413,423 + Synpcc7942_0423 0.12 -1.6 413,460 + Synpcc7942_0423 0.29 -0.0 413,479 + Synpcc7942_0423 0.38 -2.4 413,487 - Synpcc7942_0423 0.42 -1.0 413,506 + Synpcc7942_0423 0.50 -2.4 413,571 + Synpcc7942_0423 0.80 -1.6 413,611 + -0.6 413,624 + -1.2 413,624 + +0.4 413,632 - +0.3 413,659 - +0.7 413,682 + -2.6 413,684 + -1.6 413,690 - +0.3 413,692 + +1.5 413,692 + +1.0 413,700 - +1.0 413,700 - -1.0 413,995 + -1.6 414,065 - psbAI Synpcc7942_0424 0.18 +0.5 414,068 + psbAI Synpcc7942_0424 0.18 +1.1 414,089 - psbAI Synpcc7942_0424 0.20 +0.8 414,089 - psbAI Synpcc7942_0424 0.20 -1.6 414,190 + psbAI Synpcc7942_0424 0.29 -0.0 414,283 + psbAI Synpcc7942_0424 0.38 -2.6 414,298 + psbAI Synpcc7942_0424 0.39 -0.0 414,325 - psbAI Synpcc7942_0424 0.42 -0.6
Or see this region's nucleotide sequence