Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cinA and Synpcc7942_0281 are separated by 9 nucleotides Synpcc7942_0281 and glyA are separated by 22 nucleotides
Synpcc7942_0280: cinA - competence damage-inducible protein A, at 275,768 to 277,033
cinA
Synpcc7942_0281: Synpcc7942_0281 - probable glycosyltransferase, at 277,043 to 278,116
_0281
Synpcc7942_0282: glyA - serine hydroxymethyltransferase, at 278,139 to 279,422
glyA
Position (kb) 277
278
279 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 276.069 kb on + strand, within cinA at 276.095 kb on + strand, within cinA at 276.103 kb on - strand, within cinA at 276.116 kb on + strand, within cinA at 276.145 kb on - strand, within cinA at 276.182 kb on + strand, within cinA at 276.220 kb on + strand, within cinA at 276.228 kb on - strand, within cinA at 276.251 kb on + strand, within cinA at 276.271 kb on - strand, within cinA at 276.292 kb on + strand, within cinA at 276.292 kb on + strand, within cinA at 276.300 kb on - strand, within cinA at 276.300 kb on - strand, within cinA at 276.316 kb on + strand, within cinA at 276.319 kb on - strand, within cinA at 276.338 kb on - strand, within cinA at 276.348 kb on + strand, within cinA at 276.376 kb on + strand, within cinA at 276.386 kb on + strand, within cinA at 276.409 kb on + strand, within cinA at 276.417 kb on - strand, within cinA at 276.514 kb on + strand, within cinA at 276.521 kb on - strand, within cinA at 276.521 kb on - strand, within cinA at 276.531 kb on - strand, within cinA at 276.572 kb on + strand, within cinA at 276.589 kb on - strand, within cinA at 276.638 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.750 kb on + strand, within cinA at 276.751 kb on - strand, within cinA at 276.772 kb on + strand, within cinA at 276.808 kb on + strand, within cinA at 276.817 kb on + strand, within cinA at 276.822 kb on + strand, within cinA at 276.835 kb on + strand, within cinA at 276.843 kb on - strand, within cinA at 276.867 kb on + strand, within cinA at 276.875 kb on - strand, within cinA at 276.875 kb on - strand, within cinA at 276.909 kb on - strand at 276.929 kb on + strand at 276.942 kb on + strand at 276.947 kb on + strand at 276.962 kb on + strand at 276.972 kb on + strand at 276.988 kb on - strand at 278.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 276,069 + cinA Synpcc7942_0280 0.24 -2.1 276,095 + cinA Synpcc7942_0280 0.26 +0.6 276,103 - cinA Synpcc7942_0280 0.26 -1.6 276,116 + cinA Synpcc7942_0280 0.27 +2.3 276,145 - cinA Synpcc7942_0280 0.30 -2.4 276,182 + cinA Synpcc7942_0280 0.33 -3.8 276,220 + cinA Synpcc7942_0280 0.36 +1.1 276,228 - cinA Synpcc7942_0280 0.36 +2.0 276,251 + cinA Synpcc7942_0280 0.38 -0.3 276,271 - cinA Synpcc7942_0280 0.40 -1.1 276,292 + cinA Synpcc7942_0280 0.41 +0.5 276,292 + cinA Synpcc7942_0280 0.41 +0.3 276,300 - cinA Synpcc7942_0280 0.42 +0.7 276,300 - cinA Synpcc7942_0280 0.42 +0.7 276,316 + cinA Synpcc7942_0280 0.43 +1.9 276,319 - cinA Synpcc7942_0280 0.44 +0.4 276,338 - cinA Synpcc7942_0280 0.45 -0.0 276,348 + cinA Synpcc7942_0280 0.46 +0.4 276,376 + cinA Synpcc7942_0280 0.48 -3.4 276,386 + cinA Synpcc7942_0280 0.49 +0.8 276,409 + cinA Synpcc7942_0280 0.51 +0.5 276,417 - cinA Synpcc7942_0280 0.51 +0.6 276,514 + cinA Synpcc7942_0280 0.59 +0.2 276,521 - cinA Synpcc7942_0280 0.59 +0.7 276,521 - cinA Synpcc7942_0280 0.59 +0.4 276,531 - cinA Synpcc7942_0280 0.60 +1.0 276,572 + cinA Synpcc7942_0280 0.64 -0.8 276,589 - cinA Synpcc7942_0280 0.65 +1.4 276,638 - cinA Synpcc7942_0280 0.69 +0.7 276,695 - cinA Synpcc7942_0280 0.73 +1.1 276,695 - cinA Synpcc7942_0280 0.73 -0.4 276,750 + cinA Synpcc7942_0280 0.78 +2.3 276,751 - cinA Synpcc7942_0280 0.78 +2.1 276,772 + cinA Synpcc7942_0280 0.79 +0.2 276,808 + cinA Synpcc7942_0280 0.82 -0.3 276,817 + cinA Synpcc7942_0280 0.83 +2.1 276,822 + cinA Synpcc7942_0280 0.83 +1.5 276,835 + cinA Synpcc7942_0280 0.84 +0.3 276,843 - cinA Synpcc7942_0280 0.85 +0.9 276,867 + cinA Synpcc7942_0280 0.87 -1.1 276,875 - cinA Synpcc7942_0280 0.87 -1.9 276,875 - cinA Synpcc7942_0280 0.87 -0.9 276,909 - -0.3 276,929 + -1.1 276,942 + -1.6 276,947 + +1.9 276,962 + -0.1 276,972 + -1.6 276,988 - +2.1 278,112 + -0.2
Or see this region's nucleotide sequence