Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0226 and pth overlap by 4 nucleotides pth and Synpcc7942_0228 are separated by 28 nucleotides Synpcc7942_0228 and Synpcc7942_0229 are separated by 113 nucleotides Synpcc7942_0229 and Synpcc7942_0230 are separated by 41 nucleotides
Synpcc7942_0226: Synpcc7942_0226 - Sec-independent protein translocase TatA, at 224,357 to 224,632
_0226
Synpcc7942_0227: pth - peptidyl-tRNA hydrolase, at 224,629 to 225,255
pth
Synpcc7942_0228: Synpcc7942_0228 - hypothetical protein, at 225,284 to 225,544
_0228
Synpcc7942_0229: Synpcc7942_0229 - hypothetical protein, at 225,658 to 226,221
_0229
Synpcc7942_0230: Synpcc7942_0230 - hypothetical protein, at 226,263 to 227,309
_0230
Position (kb) 225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 224.347 kb on + strand at 224.626 kb on + strand at 224.626 kb on + strand at 224.634 kb on - strand at 224.634 kb on - strand at 225.183 kb on + strand at 225.227 kb on + strand at 225.235 kb on - strand at 225.235 kb on - strand at 225.249 kb on + strand at 225.257 kb on - strand at 225.257 kb on - strand at 225.257 kb on - strand at 225.261 kb on + strand at 225.261 kb on + strand at 225.264 kb on - strand at 225.275 kb on + strand at 225.279 kb on - strand at 225.311 kb on + strand, within Synpcc7942_0228 at 225.319 kb on - strand, within Synpcc7942_0228 at 225.337 kb on - strand, within Synpcc7942_0228 at 225.359 kb on + strand, within Synpcc7942_0228 at 225.378 kb on + strand, within Synpcc7942_0228 at 225.398 kb on - strand, within Synpcc7942_0228 at 225.423 kb on + strand, within Synpcc7942_0228 at 225.425 kb on + strand, within Synpcc7942_0228 at 225.464 kb on + strand, within Synpcc7942_0228 at 225.500 kb on + strand, within Synpcc7942_0228 at 225.527 kb on - strand at 225.560 kb on + strand at 225.572 kb on + strand at 225.580 kb on - strand at 225.617 kb on - strand at 225.630 kb on + strand at 225.630 kb on + strand at 225.630 kb on + strand at 225.638 kb on - strand at 225.676 kb on + strand at 225.701 kb on + strand at 225.721 kb on + strand, within Synpcc7942_0229 at 225.723 kb on + strand, within Synpcc7942_0229 at 225.804 kb on + strand, within Synpcc7942_0229 at 225.814 kb on - strand, within Synpcc7942_0229 at 225.821 kb on - strand, within Synpcc7942_0229 at 226.010 kb on - strand, within Synpcc7942_0229 at 226.020 kb on - strand, within Synpcc7942_0229 at 226.093 kb on + strand, within Synpcc7942_0229 at 226.107 kb on - strand, within Synpcc7942_0229 at 226.121 kb on - strand, within Synpcc7942_0229 at 226.121 kb on - strand, within Synpcc7942_0229 at 226.160 kb on + strand, within Synpcc7942_0229 at 226.168 kb on - strand at 226.168 kb on - strand at 226.181 kb on - strand at 226.190 kb on + strand at 226.190 kb on + strand at 226.237 kb on + strand at 226.237 kb on + strand at 226.243 kb on + strand at 226.268 kb on - strand at 226.325 kb on + strand at 226.333 kb on - strand at 226.366 kb on + strand at 226.366 kb on - strand at 226.367 kb on - strand at 226.374 kb on - strand, within Synpcc7942_0230 at 226.374 kb on - strand, within Synpcc7942_0230 at 226.385 kb on - strand, within Synpcc7942_0230 at 226.412 kb on - strand, within Synpcc7942_0230 at 226.416 kb on - strand, within Synpcc7942_0230 at 226.416 kb on - strand, within Synpcc7942_0230 at 226.473 kb on - strand, within Synpcc7942_0230 at 226.473 kb on - strand, within Synpcc7942_0230 at 226.484 kb on + strand, within Synpcc7942_0230 at 226.492 kb on - strand, within Synpcc7942_0230 at 226.492 kb on - strand, within Synpcc7942_0230 at 226.492 kb on - strand, within Synpcc7942_0230 at 226.507 kb on + strand, within Synpcc7942_0230 at 226.515 kb on - strand, within Synpcc7942_0230
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 224,347 + +0.5 224,626 + -0.1 224,626 + -2.9 224,634 - +2.1 224,634 - +0.5 225,183 + -1.1 225,227 + -1.1 225,235 - +2.6 225,235 - +0.9 225,249 + +1.4 225,257 - +1.2 225,257 - -1.7 225,257 - +0.6 225,261 + -0.2 225,261 + +0.3 225,264 - +1.4 225,275 + +1.9 225,279 - +0.2 225,311 + Synpcc7942_0228 0.10 +0.3 225,319 - Synpcc7942_0228 0.13 +3.5 225,337 - Synpcc7942_0228 0.20 +1.5 225,359 + Synpcc7942_0228 0.29 -0.1 225,378 + Synpcc7942_0228 0.36 +1.5 225,398 - Synpcc7942_0228 0.44 -1.7 225,423 + Synpcc7942_0228 0.53 +0.1 225,425 + Synpcc7942_0228 0.54 +2.5 225,464 + Synpcc7942_0228 0.69 -0.1 225,500 + Synpcc7942_0228 0.83 +0.3 225,527 - +0.8 225,560 + +1.0 225,572 + +1.4 225,580 - +0.6 225,617 - +2.8 225,630 + +0.7 225,630 + -1.0 225,630 + -0.1 225,638 - +0.8 225,676 + -1.1 225,701 + +2.2 225,721 + Synpcc7942_0229 0.11 -1.4 225,723 + Synpcc7942_0229 0.12 -2.4 225,804 + Synpcc7942_0229 0.26 +0.9 225,814 - Synpcc7942_0229 0.28 -1.1 225,821 - Synpcc7942_0229 0.29 -0.4 226,010 - Synpcc7942_0229 0.62 +0.5 226,020 - Synpcc7942_0229 0.64 +0.7 226,093 + Synpcc7942_0229 0.77 -0.9 226,107 - Synpcc7942_0229 0.80 +1.4 226,121 - Synpcc7942_0229 0.82 -1.1 226,121 - Synpcc7942_0229 0.82 +0.8 226,160 + Synpcc7942_0229 0.89 +0.2 226,168 - +0.8 226,168 - +1.2 226,181 - +0.4 226,190 + +2.0 226,190 + -0.1 226,237 + -1.7 226,237 + +0.9 226,243 + -0.6 226,268 - +1.7 226,325 + +0.6 226,333 - -1.9 226,366 + -1.1 226,366 - -0.1 226,367 - +0.1 226,374 - Synpcc7942_0230 0.11 +1.1 226,374 - Synpcc7942_0230 0.11 +1.3 226,385 - Synpcc7942_0230 0.12 +0.5 226,412 - Synpcc7942_0230 0.14 +0.2 226,416 - Synpcc7942_0230 0.15 -0.1 226,416 - Synpcc7942_0230 0.15 +1.5 226,473 - Synpcc7942_0230 0.20 +2.7 226,473 - Synpcc7942_0230 0.20 +0.1 226,484 + Synpcc7942_0230 0.21 -2.1 226,492 - Synpcc7942_0230 0.22 +0.1 226,492 - Synpcc7942_0230 0.22 +2.7 226,492 - Synpcc7942_0230 0.22 +0.9 226,507 + Synpcc7942_0230 0.23 -1.7 226,515 - Synpcc7942_0230 0.24 +0.4
Or see this region's nucleotide sequence