Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0207

Experiment: Ceftazidime 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0206 and Synpcc7942_0207 are separated by 62 nucleotidesSynpcc7942_0207 and Synpcc7942_0208 are separated by 72 nucleotides Synpcc7942_0206: Synpcc7942_0206 - hypothetical protein, at 207,362 to 208,750 _0206 Synpcc7942_0207: Synpcc7942_0207 - hypothetical protein, at 208,813 to 208,983 _0207 Synpcc7942_0208: Synpcc7942_0208 - TPR repeat, at 209,056 to 211,827 _0208 Position (kb) 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 207.899 kb on + strand, within Synpcc7942_0206at 207.980 kb on - strand, within Synpcc7942_0206at 207.989 kb on - strand, within Synpcc7942_0206at 208.082 kb on - strand, within Synpcc7942_0206at 208.146 kb on + strand, within Synpcc7942_0206at 208.182 kb on - strand, within Synpcc7942_0206at 208.288 kb on - strand, within Synpcc7942_0206at 208.338 kb on + strand, within Synpcc7942_0206at 208.381 kb on + strand, within Synpcc7942_0206at 208.407 kb on - strand, within Synpcc7942_0206at 208.414 kb on + strand, within Synpcc7942_0206at 208.419 kb on + strand, within Synpcc7942_0206at 208.419 kb on + strand, within Synpcc7942_0206at 208.459 kb on + strand, within Synpcc7942_0206at 208.465 kb on + strand, within Synpcc7942_0206at 208.478 kb on + strandat 208.478 kb on + strand, within Synpcc7942_0206at 208.486 kb on - strand, within Synpcc7942_0206at 208.556 kb on + strandat 208.559 kb on - strand, within Synpcc7942_0206at 208.559 kb on - strand, within Synpcc7942_0206at 208.564 kb on - strand, within Synpcc7942_0206at 208.569 kb on - strand, within Synpcc7942_0206at 208.575 kb on + strand, within Synpcc7942_0206at 208.578 kb on - strand, within Synpcc7942_0206at 208.589 kb on + strand, within Synpcc7942_0206at 208.610 kb on + strand, within Synpcc7942_0206at 208.610 kb on + strand, within Synpcc7942_0206at 208.617 kb on + strandat 208.623 kb on - strandat 208.625 kb on - strandat 208.633 kb on + strandat 208.638 kb on + strandat 208.638 kb on + strandat 208.648 kb on - strandat 208.652 kb on + strandat 208.691 kb on + strandat 208.735 kb on + strandat 208.735 kb on + strandat 208.742 kb on - strandat 208.754 kb on - strandat 208.802 kb on + strandat 208.810 kb on - strandat 208.811 kb on - strandat 208.815 kb on + strandat 208.815 kb on + strandat 208.824 kb on - strandat 208.829 kb on + strandat 208.869 kb on - strand, within Synpcc7942_0207at 208.869 kb on - strand, within Synpcc7942_0207at 208.895 kb on - strand, within Synpcc7942_0207at 208.895 kb on - strand, within Synpcc7942_0207at 208.950 kb on + strand, within Synpcc7942_0207at 208.974 kb on - strandat 208.992 kb on - strandat 208.995 kb on + strandat 208.995 kb on + strandat 208.995 kb on + strandat 208.995 kb on + strandat 208.995 kb on + strandat 209.000 kb on + strandat 209.000 kb on + strandat 209.003 kb on - strandat 209.003 kb on - strandat 209.003 kb on - strandat 209.003 kb on - strandat 209.008 kb on - strandat 209.056 kb on + strandat 209.064 kb on - strandat 209.069 kb on - strandat 209.069 kb on - strandat 209.092 kb on - strandat 209.120 kb on + strandat 209.127 kb on - strandat 209.128 kb on - strandat 209.143 kb on - strandat 209.231 kb on - strandat 209.231 kb on - strandat 209.242 kb on - strandat 209.247 kb on + strandat 209.265 kb on + strandat 209.306 kb on - strandat 209.328 kb on - strandat 209.336 kb on + strand, within Synpcc7942_0208at 209.343 kb on - strand, within Synpcc7942_0208at 209.343 kb on - strand, within Synpcc7942_0208at 209.344 kb on - strand, within Synpcc7942_0208at 209.344 kb on - strand, within Synpcc7942_0208at 209.377 kb on - strandat 209.400 kb on + strand, within Synpcc7942_0208at 209.400 kb on + strand, within Synpcc7942_0208at 209.402 kb on + strand, within Synpcc7942_0208at 209.402 kb on + strand, within Synpcc7942_0208at 209.410 kb on - strand, within Synpcc7942_0208at 209.448 kb on - strand, within Synpcc7942_0208at 209.450 kb on + strand, within Synpcc7942_0208at 209.478 kb on - strand, within Synpcc7942_0208at 209.478 kb on - strand, within Synpcc7942_0208at 209.478 kb on - strand, within Synpcc7942_0208at 209.499 kb on - strand, within Synpcc7942_0208at 209.502 kb on + strand, within Synpcc7942_0208at 209.521 kb on + strand, within Synpcc7942_0208at 209.547 kb on + strand, within Synpcc7942_0208at 209.572 kb on + strand, within Synpcc7942_0208at 209.590 kb on + strand, within Synpcc7942_0208at 209.613 kb on + strand, within Synpcc7942_0208at 209.623 kb on + strand, within Synpcc7942_0208at 209.628 kb on + strand, within Synpcc7942_0208at 209.629 kb on + strand, within Synpcc7942_0208at 209.631 kb on - strand, within Synpcc7942_0208at 209.631 kb on - strand, within Synpcc7942_0208at 209.631 kb on - strand, within Synpcc7942_0208at 209.637 kb on - strand, within Synpcc7942_0208at 209.647 kb on + strand, within Synpcc7942_0208at 209.647 kb on + strand, within Synpcc7942_0208at 209.652 kb on + strand, within Synpcc7942_0208at 209.655 kb on - strand, within Synpcc7942_0208at 209.660 kb on - strand, within Synpcc7942_0208at 209.662 kb on + strand, within Synpcc7942_0208at 209.662 kb on + strand, within Synpcc7942_0208at 209.665 kb on - strand, within Synpcc7942_0208at 209.665 kb on - strand, within Synpcc7942_0208at 209.667 kb on + strand, within Synpcc7942_0208at 209.669 kb on + strand, within Synpcc7942_0208at 209.670 kb on - strand, within Synpcc7942_0208at 209.675 kb on - strand, within Synpcc7942_0208at 209.682 kb on + strand, within Synpcc7942_0208at 209.690 kb on - strand, within Synpcc7942_0208at 209.690 kb on - strand, within Synpcc7942_0208at 209.707 kb on - strand, within Synpcc7942_0208at 209.715 kb on - strand, within Synpcc7942_0208at 209.718 kb on + strand, within Synpcc7942_0208at 209.721 kb on - strand, within Synpcc7942_0208at 209.725 kb on + strand, within Synpcc7942_0208at 209.725 kb on + strand, within Synpcc7942_0208at 209.725 kb on + strand, within Synpcc7942_0208at 209.725 kb on + strand, within Synpcc7942_0208at 209.733 kb on - strand, within Synpcc7942_0208at 209.733 kb on - strand, within Synpcc7942_0208at 209.733 kb on - strand, within Synpcc7942_0208at 209.780 kb on - strand, within Synpcc7942_0208at 209.782 kb on - strand, within Synpcc7942_0208at 209.808 kb on + strand, within Synpcc7942_0208at 209.808 kb on + strand, within Synpcc7942_0208at 209.811 kb on - strand, within Synpcc7942_0208at 209.816 kb on - strand, within Synpcc7942_0208at 209.821 kb on + strand, within Synpcc7942_0208at 209.830 kb on - strand, within Synpcc7942_0208at 209.889 kb on + strand, within Synpcc7942_0208at 209.900 kb on + strand, within Synpcc7942_0208at 209.916 kb on - strand, within Synpcc7942_0208at 209.948 kb on + strand, within Synpcc7942_0208

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml
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207,899 + Synpcc7942_0206 0.39 +0.5
207,980 - Synpcc7942_0206 0.44 -0.1
207,989 - Synpcc7942_0206 0.45 +0.3
208,082 - Synpcc7942_0206 0.52 +1.3
208,146 + Synpcc7942_0206 0.56 -0.1
208,182 - Synpcc7942_0206 0.59 -0.1
208,288 - Synpcc7942_0206 0.67 +2.4
208,338 + Synpcc7942_0206 0.70 +0.6
208,381 + Synpcc7942_0206 0.73 +0.0
208,407 - Synpcc7942_0206 0.75 +0.7
208,414 + Synpcc7942_0206 0.76 -2.4
208,419 + Synpcc7942_0206 0.76 +0.5
208,419 + Synpcc7942_0206 0.76 +1.6
208,459 + Synpcc7942_0206 0.79 -2.1
208,465 + Synpcc7942_0206 0.79 +0.2
208,478 + -1.1
208,478 + Synpcc7942_0206 0.80 +0.6
208,486 - Synpcc7942_0206 0.81 +0.7
208,556 + +1.5
208,559 - Synpcc7942_0206 0.86 +0.3
208,559 - Synpcc7942_0206 0.86 -0.1
208,564 - Synpcc7942_0206 0.87 +0.4
208,569 - Synpcc7942_0206 0.87 +0.5
208,575 + Synpcc7942_0206 0.87 +1.5
208,578 - Synpcc7942_0206 0.88 -2.7
208,589 + Synpcc7942_0206 0.88 +0.9
208,610 + Synpcc7942_0206 0.90 +2.2
208,610 + Synpcc7942_0206 0.90 +0.4
208,617 + +0.9
208,623 - +1.5
208,625 - +1.6
208,633 + +0.3
208,638 + +0.8
208,638 + +0.4
208,648 - +0.9
208,652 + -0.3
208,691 + +1.2
208,735 + +0.2
208,735 + +0.8
208,742 - -0.1
208,754 - +0.0
208,802 + -1.3
208,810 - -0.9
208,811 - +0.7
208,815 + +0.5
208,815 + +1.8
208,824 - -0.4
208,829 + -0.1
208,869 - Synpcc7942_0207 0.33 -0.5
208,869 - Synpcc7942_0207 0.33 +0.9
208,895 - Synpcc7942_0207 0.48 +3.2
208,895 - Synpcc7942_0207 0.48 +1.5
208,950 + Synpcc7942_0207 0.80 -1.4
208,974 - -2.9
208,992 - +2.2
208,995 + +0.4
208,995 + -0.8
208,995 + -0.5
208,995 + -2.1
208,995 + -3.4
209,000 + +2.5
209,000 + +1.3
209,003 - -1.4
209,003 - +1.3
209,003 - +3.1
209,003 - +1.4
209,008 - -1.2
209,056 + +0.5
209,064 - -0.1
209,069 - -0.1
209,069 - +1.5
209,092 - +3.7
209,120 + +1.2
209,127 - +0.1
209,128 - +2.0
209,143 - +3.5
209,231 - +0.6
209,231 - +0.9
209,242 - +2.6
209,247 + +0.9
209,265 + +1.6
209,306 - -0.5
209,328 - -0.1
209,336 + Synpcc7942_0208 0.10 -0.2
209,343 - Synpcc7942_0208 0.10 -1.7
209,343 - Synpcc7942_0208 0.10 +0.5
209,344 - Synpcc7942_0208 0.10 +1.2
209,344 - Synpcc7942_0208 0.10 -0.5
209,377 - +0.9
209,400 + Synpcc7942_0208 0.12 +0.9
209,400 + Synpcc7942_0208 0.12 +2.2
209,402 + Synpcc7942_0208 0.12 +0.3
209,402 + Synpcc7942_0208 0.12 +2.3
209,410 - Synpcc7942_0208 0.13 +0.2
209,448 - Synpcc7942_0208 0.14 -1.1
209,450 + Synpcc7942_0208 0.14 -0.4
209,478 - Synpcc7942_0208 0.15 +2.9
209,478 - Synpcc7942_0208 0.15 +0.8
209,478 - Synpcc7942_0208 0.15 -1.8
209,499 - Synpcc7942_0208 0.16 -3.3
209,502 + Synpcc7942_0208 0.16 -0.1
209,521 + Synpcc7942_0208 0.17 +1.8
209,547 + Synpcc7942_0208 0.18 +0.8
209,572 + Synpcc7942_0208 0.19 +0.6
209,590 + Synpcc7942_0208 0.19 +0.2
209,613 + Synpcc7942_0208 0.20 +0.9
209,623 + Synpcc7942_0208 0.20 +0.0
209,628 + Synpcc7942_0208 0.21 +0.1
209,629 + Synpcc7942_0208 0.21 +0.4
209,631 - Synpcc7942_0208 0.21 +0.7
209,631 - Synpcc7942_0208 0.21 -0.5
209,631 - Synpcc7942_0208 0.21 -1.1
209,637 - Synpcc7942_0208 0.21 -0.1
209,647 + Synpcc7942_0208 0.21 +0.9
209,647 + Synpcc7942_0208 0.21 +0.9
209,652 + Synpcc7942_0208 0.22 +0.5
209,655 - Synpcc7942_0208 0.22 -0.7
209,660 - Synpcc7942_0208 0.22 +1.0
209,662 + Synpcc7942_0208 0.22 +0.1
209,662 + Synpcc7942_0208 0.22 +0.0
209,665 - Synpcc7942_0208 0.22 +2.0
209,665 - Synpcc7942_0208 0.22 +1.1
209,667 + Synpcc7942_0208 0.22 -1.7
209,669 + Synpcc7942_0208 0.22 -2.4
209,670 - Synpcc7942_0208 0.22 +0.5
209,675 - Synpcc7942_0208 0.22 +0.0
209,682 + Synpcc7942_0208 0.23 +2.2
209,690 - Synpcc7942_0208 0.23 +0.1
209,690 - Synpcc7942_0208 0.23 +1.2
209,707 - Synpcc7942_0208 0.23 -0.1
209,715 - Synpcc7942_0208 0.24 +1.0
209,718 + Synpcc7942_0208 0.24 -1.5
209,721 - Synpcc7942_0208 0.24 +1.1
209,725 + Synpcc7942_0208 0.24 +0.9
209,725 + Synpcc7942_0208 0.24 -2.9
209,725 + Synpcc7942_0208 0.24 -2.5
209,725 + Synpcc7942_0208 0.24 +1.3
209,733 - Synpcc7942_0208 0.24 +1.0
209,733 - Synpcc7942_0208 0.24 +1.4
209,733 - Synpcc7942_0208 0.24 -0.4
209,780 - Synpcc7942_0208 0.26 +0.3
209,782 - Synpcc7942_0208 0.26 -1.7
209,808 + Synpcc7942_0208 0.27 +0.6
209,808 + Synpcc7942_0208 0.27 +0.9
209,811 - Synpcc7942_0208 0.27 +0.9
209,816 - Synpcc7942_0208 0.27 +1.9
209,821 + Synpcc7942_0208 0.28 +0.0
209,830 - Synpcc7942_0208 0.28 -0.2
209,889 + Synpcc7942_0208 0.30 -0.1
209,900 + Synpcc7942_0208 0.30 +0.7
209,916 - Synpcc7942_0208 0.31 +1.2
209,948 + Synpcc7942_0208 0.32 +0.6

Or see this region's nucleotide sequence