Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0205 and Synpcc7942_0206 are separated by 147 nucleotides Synpcc7942_0206 and Synpcc7942_0207 are separated by 62 nucleotides Synpcc7942_0207 and Synpcc7942_0208 are separated by 72 nucleotides
Synpcc7942_0205: Synpcc7942_0205 - nicotinamide-nucleotide adenylyltransferase, at 206,198 to 207,214
_0205
Synpcc7942_0206: Synpcc7942_0206 - hypothetical protein, at 207,362 to 208,750
_0206
Synpcc7942_0207: Synpcc7942_0207 - hypothetical protein, at 208,813 to 208,983
_0207
Synpcc7942_0208: Synpcc7942_0208 - TPR repeat, at 209,056 to 211,827
_0208
Position (kb) 207
208
209 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 206.371 kb on + strand, within Synpcc7942_0205 at 206.446 kb on - strand, within Synpcc7942_0205 at 206.550 kb on - strand, within Synpcc7942_0205 at 206.608 kb on - strand, within Synpcc7942_0205 at 206.637 kb on + strand, within Synpcc7942_0205 at 206.686 kb on + strand, within Synpcc7942_0205 at 206.772 kb on - strand, within Synpcc7942_0205 at 206.906 kb on + strand, within Synpcc7942_0205 at 207.229 kb on + strand at 207.229 kb on + strand at 207.229 kb on + strand at 207.237 kb on - strand at 207.237 kb on - strand at 207.237 kb on - strand at 207.261 kb on + strand at 207.300 kb on + strand at 207.300 kb on + strand at 207.317 kb on - strand at 207.333 kb on + strand at 207.393 kb on + strand at 207.413 kb on - strand at 207.427 kb on + strand at 207.512 kb on - strand, within Synpcc7942_0206 at 207.530 kb on + strand, within Synpcc7942_0206 at 207.568 kb on + strand, within Synpcc7942_0206 at 207.576 kb on + strand, within Synpcc7942_0206 at 207.586 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.667 kb on - strand, within Synpcc7942_0206 at 207.667 kb on - strand, within Synpcc7942_0206 at 207.668 kb on - strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.686 kb on + strand, within Synpcc7942_0206 at 207.692 kb on + strand, within Synpcc7942_0206 at 207.717 kb on + strand, within Synpcc7942_0206 at 207.717 kb on + strand, within Synpcc7942_0206 at 207.725 kb on - strand, within Synpcc7942_0206 at 207.727 kb on + strand, within Synpcc7942_0206 at 207.741 kb on + strand, within Synpcc7942_0206 at 207.753 kb on + strand, within Synpcc7942_0206 at 207.753 kb on + strand, within Synpcc7942_0206 at 207.761 kb on - strand, within Synpcc7942_0206 at 207.761 kb on - strand, within Synpcc7942_0206 at 207.763 kb on - strand, within Synpcc7942_0206 at 207.766 kb on + strand, within Synpcc7942_0206 at 207.783 kb on - strand, within Synpcc7942_0206 at 207.789 kb on - strand, within Synpcc7942_0206 at 207.899 kb on + strand, within Synpcc7942_0206 at 207.980 kb on - strand, within Synpcc7942_0206 at 207.989 kb on - strand, within Synpcc7942_0206 at 208.082 kb on - strand, within Synpcc7942_0206 at 208.146 kb on + strand, within Synpcc7942_0206 at 208.182 kb on - strand, within Synpcc7942_0206 at 208.288 kb on - strand, within Synpcc7942_0206 at 208.338 kb on + strand, within Synpcc7942_0206 at 208.381 kb on + strand, within Synpcc7942_0206 at 208.407 kb on - strand, within Synpcc7942_0206 at 208.414 kb on + strand, within Synpcc7942_0206 at 208.419 kb on + strand, within Synpcc7942_0206 at 208.419 kb on + strand, within Synpcc7942_0206 at 208.459 kb on + strand, within Synpcc7942_0206 at 208.465 kb on + strand, within Synpcc7942_0206 at 208.478 kb on + strand at 208.478 kb on + strand, within Synpcc7942_0206 at 208.486 kb on - strand, within Synpcc7942_0206 at 208.556 kb on + strand at 208.559 kb on - strand, within Synpcc7942_0206 at 208.559 kb on - strand, within Synpcc7942_0206 at 208.564 kb on - strand, within Synpcc7942_0206 at 208.569 kb on - strand, within Synpcc7942_0206 at 208.575 kb on + strand, within Synpcc7942_0206 at 208.578 kb on - strand, within Synpcc7942_0206 at 208.589 kb on + strand, within Synpcc7942_0206 at 208.610 kb on + strand, within Synpcc7942_0206 at 208.610 kb on + strand, within Synpcc7942_0206 at 208.617 kb on + strand at 208.623 kb on - strand at 208.625 kb on - strand at 208.633 kb on + strand at 208.638 kb on + strand at 208.638 kb on + strand at 208.648 kb on - strand at 208.652 kb on + strand at 208.691 kb on + strand at 208.735 kb on + strand at 208.735 kb on + strand at 208.742 kb on - strand at 208.754 kb on - strand at 208.802 kb on + strand at 208.810 kb on - strand at 208.811 kb on - strand at 208.815 kb on + strand at 208.815 kb on + strand at 208.824 kb on - strand at 208.829 kb on + strand at 208.869 kb on - strand, within Synpcc7942_0207 at 208.869 kb on - strand, within Synpcc7942_0207 at 208.895 kb on - strand, within Synpcc7942_0207 at 208.895 kb on - strand, within Synpcc7942_0207 at 208.950 kb on + strand, within Synpcc7942_0207 at 208.974 kb on - strand at 208.992 kb on - strand at 208.995 kb on + strand at 208.995 kb on + strand at 208.995 kb on + strand at 208.995 kb on + strand at 208.995 kb on + strand at 209.000 kb on + strand at 209.000 kb on + strand at 209.003 kb on - strand at 209.003 kb on - strand at 209.003 kb on - strand at 209.003 kb on - strand at 209.008 kb on - strand at 209.056 kb on + strand at 209.064 kb on - strand at 209.069 kb on - strand at 209.069 kb on - strand at 209.092 kb on - strand at 209.120 kb on + strand at 209.127 kb on - strand at 209.128 kb on - strand at 209.143 kb on - strand at 209.231 kb on - strand at 209.231 kb on - strand at 209.242 kb on - strand at 209.247 kb on + strand at 209.265 kb on + strand at 209.306 kb on - strand at 209.328 kb on - strand at 209.336 kb on + strand, within Synpcc7942_0208 at 209.343 kb on - strand, within Synpcc7942_0208 at 209.343 kb on - strand, within Synpcc7942_0208 at 209.344 kb on - strand, within Synpcc7942_0208 at 209.344 kb on - strand, within Synpcc7942_0208 at 209.377 kb on - strand at 209.400 kb on + strand, within Synpcc7942_0208 at 209.400 kb on + strand, within Synpcc7942_0208 at 209.402 kb on + strand, within Synpcc7942_0208 at 209.402 kb on + strand, within Synpcc7942_0208 at 209.410 kb on - strand, within Synpcc7942_0208 at 209.448 kb on - strand, within Synpcc7942_0208 at 209.450 kb on + strand, within Synpcc7942_0208 at 209.478 kb on - strand, within Synpcc7942_0208 at 209.478 kb on - strand, within Synpcc7942_0208 at 209.478 kb on - strand, within Synpcc7942_0208 at 209.499 kb on - strand, within Synpcc7942_0208 at 209.502 kb on + strand, within Synpcc7942_0208 at 209.521 kb on + strand, within Synpcc7942_0208 at 209.547 kb on + strand, within Synpcc7942_0208 at 209.572 kb on + strand, within Synpcc7942_0208 at 209.590 kb on + strand, within Synpcc7942_0208 at 209.613 kb on + strand, within Synpcc7942_0208 at 209.623 kb on + strand, within Synpcc7942_0208 at 209.628 kb on + strand, within Synpcc7942_0208 at 209.629 kb on + strand, within Synpcc7942_0208 at 209.631 kb on - strand, within Synpcc7942_0208 at 209.631 kb on - strand, within Synpcc7942_0208 at 209.631 kb on - strand, within Synpcc7942_0208 at 209.637 kb on - strand, within Synpcc7942_0208 at 209.647 kb on + strand, within Synpcc7942_0208 at 209.647 kb on + strand, within Synpcc7942_0208 at 209.652 kb on + strand, within Synpcc7942_0208 at 209.655 kb on - strand, within Synpcc7942_0208 at 209.660 kb on - strand, within Synpcc7942_0208 at 209.662 kb on + strand, within Synpcc7942_0208 at 209.662 kb on + strand, within Synpcc7942_0208 at 209.665 kb on - strand, within Synpcc7942_0208 at 209.665 kb on - strand, within Synpcc7942_0208 at 209.667 kb on + strand, within Synpcc7942_0208 at 209.669 kb on + strand, within Synpcc7942_0208 at 209.670 kb on - strand, within Synpcc7942_0208 at 209.675 kb on - strand, within Synpcc7942_0208 at 209.682 kb on + strand, within Synpcc7942_0208 at 209.690 kb on - strand, within Synpcc7942_0208 at 209.690 kb on - strand, within Synpcc7942_0208 at 209.707 kb on - strand, within Synpcc7942_0208 at 209.715 kb on - strand, within Synpcc7942_0208 at 209.718 kb on + strand, within Synpcc7942_0208 at 209.721 kb on - strand, within Synpcc7942_0208 at 209.725 kb on + strand, within Synpcc7942_0208 at 209.725 kb on + strand, within Synpcc7942_0208 at 209.725 kb on + strand, within Synpcc7942_0208 at 209.725 kb on + strand, within Synpcc7942_0208 at 209.733 kb on - strand, within Synpcc7942_0208 at 209.733 kb on - strand, within Synpcc7942_0208 at 209.733 kb on - strand, within Synpcc7942_0208
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 206,371 + Synpcc7942_0205 0.17 -2.9 206,446 - Synpcc7942_0205 0.24 -0.1 206,550 - Synpcc7942_0205 0.35 -2.9 206,608 - Synpcc7942_0205 0.40 -1.9 206,637 + Synpcc7942_0205 0.43 -4.0 206,686 + Synpcc7942_0205 0.48 -3.8 206,772 - Synpcc7942_0205 0.56 -4.2 206,906 + Synpcc7942_0205 0.70 -1.7 207,229 + -3.4 207,229 + -0.1 207,229 + -1.8 207,237 - -3.7 207,237 - -1.7 207,237 - -2.4 207,261 + -5.6 207,300 + -3.2 207,300 + -3.2 207,317 - -2.1 207,333 + -1.7 207,393 + +1.4 207,413 - +2.2 207,427 + +0.4 207,512 - Synpcc7942_0206 0.11 +0.0 207,530 + Synpcc7942_0206 0.12 +1.5 207,568 + Synpcc7942_0206 0.15 -3.1 207,576 + Synpcc7942_0206 0.15 -2.4 207,586 + Synpcc7942_0206 0.16 +1.9 207,659 + Synpcc7942_0206 0.21 -2.1 207,659 + Synpcc7942_0206 0.21 -3.4 207,659 + Synpcc7942_0206 0.21 -1.4 207,667 - Synpcc7942_0206 0.22 +1.5 207,667 - Synpcc7942_0206 0.22 +1.2 207,668 - Synpcc7942_0206 0.22 -1.1 207,672 + Synpcc7942_0206 0.22 -1.7 207,672 + Synpcc7942_0206 0.22 +4.1 207,672 + Synpcc7942_0206 0.22 -0.1 207,686 + Synpcc7942_0206 0.23 +0.0 207,692 + Synpcc7942_0206 0.24 +4.2 207,717 + Synpcc7942_0206 0.26 +1.0 207,717 + Synpcc7942_0206 0.26 +0.5 207,725 - Synpcc7942_0206 0.26 +0.8 207,727 + Synpcc7942_0206 0.26 -0.1 207,741 + Synpcc7942_0206 0.27 -0.5 207,753 + Synpcc7942_0206 0.28 +1.6 207,753 + Synpcc7942_0206 0.28 +1.3 207,761 - Synpcc7942_0206 0.29 +0.9 207,761 - Synpcc7942_0206 0.29 -1.8 207,763 - Synpcc7942_0206 0.29 +0.2 207,766 + Synpcc7942_0206 0.29 -1.4 207,783 - Synpcc7942_0206 0.30 -1.1 207,789 - Synpcc7942_0206 0.31 -0.7 207,899 + Synpcc7942_0206 0.39 +0.5 207,980 - Synpcc7942_0206 0.44 -0.1 207,989 - Synpcc7942_0206 0.45 +0.3 208,082 - Synpcc7942_0206 0.52 +1.3 208,146 + Synpcc7942_0206 0.56 -0.1 208,182 - Synpcc7942_0206 0.59 -0.1 208,288 - Synpcc7942_0206 0.67 +2.4 208,338 + Synpcc7942_0206 0.70 +0.6 208,381 + Synpcc7942_0206 0.73 +0.0 208,407 - Synpcc7942_0206 0.75 +0.7 208,414 + Synpcc7942_0206 0.76 -2.4 208,419 + Synpcc7942_0206 0.76 +0.5 208,419 + Synpcc7942_0206 0.76 +1.6 208,459 + Synpcc7942_0206 0.79 -2.1 208,465 + Synpcc7942_0206 0.79 +0.2 208,478 + -1.1 208,478 + Synpcc7942_0206 0.80 +0.6 208,486 - Synpcc7942_0206 0.81 +0.7 208,556 + +1.5 208,559 - Synpcc7942_0206 0.86 +0.3 208,559 - Synpcc7942_0206 0.86 -0.1 208,564 - Synpcc7942_0206 0.87 +0.4 208,569 - Synpcc7942_0206 0.87 +0.5 208,575 + Synpcc7942_0206 0.87 +1.5 208,578 - Synpcc7942_0206 0.88 -2.7 208,589 + Synpcc7942_0206 0.88 +0.9 208,610 + Synpcc7942_0206 0.90 +2.2 208,610 + Synpcc7942_0206 0.90 +0.4 208,617 + +0.9 208,623 - +1.5 208,625 - +1.6 208,633 + +0.3 208,638 + +0.8 208,638 + +0.4 208,648 - +0.9 208,652 + -0.3 208,691 + +1.2 208,735 + +0.2 208,735 + +0.8 208,742 - -0.1 208,754 - +0.0 208,802 + -1.3 208,810 - -0.9 208,811 - +0.7 208,815 + +0.5 208,815 + +1.8 208,824 - -0.4 208,829 + -0.1 208,869 - Synpcc7942_0207 0.33 -0.5 208,869 - Synpcc7942_0207 0.33 +0.9 208,895 - Synpcc7942_0207 0.48 +3.2 208,895 - Synpcc7942_0207 0.48 +1.5 208,950 + Synpcc7942_0207 0.80 -1.4 208,974 - -2.9 208,992 - +2.2 208,995 + +0.4 208,995 + -0.8 208,995 + -0.5 208,995 + -2.1 208,995 + -3.4 209,000 + +2.5 209,000 + +1.3 209,003 - -1.4 209,003 - +1.3 209,003 - +3.1 209,003 - +1.4 209,008 - -1.2 209,056 + +0.5 209,064 - -0.1 209,069 - -0.1 209,069 - +1.5 209,092 - +3.7 209,120 + +1.2 209,127 - +0.1 209,128 - +2.0 209,143 - +3.5 209,231 - +0.6 209,231 - +0.9 209,242 - +2.6 209,247 + +0.9 209,265 + +1.6 209,306 - -0.5 209,328 - -0.1 209,336 + Synpcc7942_0208 0.10 -0.2 209,343 - Synpcc7942_0208 0.10 -1.7 209,343 - Synpcc7942_0208 0.10 +0.5 209,344 - Synpcc7942_0208 0.10 +1.2 209,344 - Synpcc7942_0208 0.10 -0.5 209,377 - +0.9 209,400 + Synpcc7942_0208 0.12 +0.9 209,400 + Synpcc7942_0208 0.12 +2.2 209,402 + Synpcc7942_0208 0.12 +0.3 209,402 + Synpcc7942_0208 0.12 +2.3 209,410 - Synpcc7942_0208 0.13 +0.2 209,448 - Synpcc7942_0208 0.14 -1.1 209,450 + Synpcc7942_0208 0.14 -0.4 209,478 - Synpcc7942_0208 0.15 +2.9 209,478 - Synpcc7942_0208 0.15 +0.8 209,478 - Synpcc7942_0208 0.15 -1.8 209,499 - Synpcc7942_0208 0.16 -3.3 209,502 + Synpcc7942_0208 0.16 -0.1 209,521 + Synpcc7942_0208 0.17 +1.8 209,547 + Synpcc7942_0208 0.18 +0.8 209,572 + Synpcc7942_0208 0.19 +0.6 209,590 + Synpcc7942_0208 0.19 +0.2 209,613 + Synpcc7942_0208 0.20 +0.9 209,623 + Synpcc7942_0208 0.20 +0.0 209,628 + Synpcc7942_0208 0.21 +0.1 209,629 + Synpcc7942_0208 0.21 +0.4 209,631 - Synpcc7942_0208 0.21 +0.7 209,631 - Synpcc7942_0208 0.21 -0.5 209,631 - Synpcc7942_0208 0.21 -1.1 209,637 - Synpcc7942_0208 0.21 -0.1 209,647 + Synpcc7942_0208 0.21 +0.9 209,647 + Synpcc7942_0208 0.21 +0.9 209,652 + Synpcc7942_0208 0.22 +0.5 209,655 - Synpcc7942_0208 0.22 -0.7 209,660 - Synpcc7942_0208 0.22 +1.0 209,662 + Synpcc7942_0208 0.22 +0.1 209,662 + Synpcc7942_0208 0.22 +0.0 209,665 - Synpcc7942_0208 0.22 +2.0 209,665 - Synpcc7942_0208 0.22 +1.1 209,667 + Synpcc7942_0208 0.22 -1.7 209,669 + Synpcc7942_0208 0.22 -2.4 209,670 - Synpcc7942_0208 0.22 +0.5 209,675 - Synpcc7942_0208 0.22 +0.0 209,682 + Synpcc7942_0208 0.23 +2.2 209,690 - Synpcc7942_0208 0.23 +0.1 209,690 - Synpcc7942_0208 0.23 +1.2 209,707 - Synpcc7942_0208 0.23 -0.1 209,715 - Synpcc7942_0208 0.24 +1.0 209,718 + Synpcc7942_0208 0.24 -1.5 209,721 - Synpcc7942_0208 0.24 +1.1 209,725 + Synpcc7942_0208 0.24 +0.9 209,725 + Synpcc7942_0208 0.24 -2.9 209,725 + Synpcc7942_0208 0.24 -2.5 209,725 + Synpcc7942_0208 0.24 +1.3 209,733 - Synpcc7942_0208 0.24 +1.0 209,733 - Synpcc7942_0208 0.24 +1.4 209,733 - Synpcc7942_0208 0.24 -0.4
Or see this region's nucleotide sequence