Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ribD and Synpcc7942_0204 overlap by 8 nucleotides Synpcc7942_0204 and Synpcc7942_0205 are separated by 151 nucleotides Synpcc7942_0205 and Synpcc7942_0206 are separated by 147 nucleotides
Synpcc7942_0203: ribD - 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 204,483 to 205,589
ribD
Synpcc7942_0204: Synpcc7942_0204 - hypothetical protein, at 205,582 to 206,046
_0204
Synpcc7942_0205: Synpcc7942_0205 - nicotinamide-nucleotide adenylyltransferase, at 206,198 to 207,214
_0205
Synpcc7942_0206: Synpcc7942_0206 - hypothetical protein, at 207,362 to 208,750
_0206
Position (kb)
206
207
208 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 205.584 kb on + strand at 205.585 kb on + strand at 205.641 kb on + strand, within Synpcc7942_0204 at 205.649 kb on - strand, within Synpcc7942_0204 at 205.652 kb on + strand, within Synpcc7942_0204 at 205.663 kb on + strand, within Synpcc7942_0204 at 205.676 kb on + strand, within Synpcc7942_0204 at 205.703 kb on - strand, within Synpcc7942_0204 at 205.719 kb on + strand, within Synpcc7942_0204 at 205.732 kb on - strand, within Synpcc7942_0204 at 205.752 kb on + strand, within Synpcc7942_0204 at 205.789 kb on + strand, within Synpcc7942_0204 at 205.789 kb on + strand, within Synpcc7942_0204 at 205.803 kb on + strand, within Synpcc7942_0204 at 205.872 kb on - strand, within Synpcc7942_0204 at 205.893 kb on + strand, within Synpcc7942_0204 at 205.913 kb on - strand, within Synpcc7942_0204 at 205.939 kb on - strand, within Synpcc7942_0204 at 205.956 kb on + strand, within Synpcc7942_0204 at 205.966 kb on + strand, within Synpcc7942_0204 at 205.966 kb on + strand, within Synpcc7942_0204 at 205.992 kb on + strand at 206.000 kb on - strand at 206.003 kb on + strand at 206.072 kb on - strand at 206.084 kb on + strand at 206.092 kb on - strand at 206.133 kb on - strand at 206.164 kb on - strand at 206.263 kb on + strand at 206.371 kb on + strand, within Synpcc7942_0205 at 206.446 kb on - strand, within Synpcc7942_0205 at 206.550 kb on - strand, within Synpcc7942_0205 at 206.608 kb on - strand, within Synpcc7942_0205 at 206.637 kb on + strand, within Synpcc7942_0205 at 206.686 kb on + strand, within Synpcc7942_0205 at 206.772 kb on - strand, within Synpcc7942_0205 at 206.906 kb on + strand, within Synpcc7942_0205 at 207.229 kb on + strand at 207.229 kb on + strand at 207.229 kb on + strand at 207.237 kb on - strand at 207.237 kb on - strand at 207.237 kb on - strand at 207.261 kb on + strand at 207.300 kb on + strand at 207.300 kb on + strand at 207.317 kb on - strand at 207.333 kb on + strand at 207.393 kb on + strand at 207.413 kb on - strand at 207.427 kb on + strand at 207.512 kb on - strand, within Synpcc7942_0206 at 207.530 kb on + strand, within Synpcc7942_0206 at 207.568 kb on + strand, within Synpcc7942_0206 at 207.576 kb on + strand, within Synpcc7942_0206 at 207.586 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.667 kb on - strand, within Synpcc7942_0206 at 207.667 kb on - strand, within Synpcc7942_0206 at 207.668 kb on - strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.686 kb on + strand, within Synpcc7942_0206 at 207.692 kb on + strand, within Synpcc7942_0206 at 207.717 kb on + strand, within Synpcc7942_0206 at 207.717 kb on + strand, within Synpcc7942_0206 at 207.725 kb on - strand, within Synpcc7942_0206 at 207.727 kb on + strand, within Synpcc7942_0206 at 207.741 kb on + strand, within Synpcc7942_0206 at 207.753 kb on + strand, within Synpcc7942_0206 at 207.753 kb on + strand, within Synpcc7942_0206 at 207.761 kb on - strand, within Synpcc7942_0206 at 207.761 kb on - strand, within Synpcc7942_0206 at 207.763 kb on - strand, within Synpcc7942_0206 at 207.766 kb on + strand, within Synpcc7942_0206 at 207.783 kb on - strand, within Synpcc7942_0206 at 207.789 kb on - strand, within Synpcc7942_0206 at 207.899 kb on + strand, within Synpcc7942_0206 at 207.980 kb on - strand, within Synpcc7942_0206 at 207.989 kb on - strand, within Synpcc7942_0206 at 208.082 kb on - strand, within Synpcc7942_0206 at 208.146 kb on + strand, within Synpcc7942_0206 at 208.182 kb on - strand, within Synpcc7942_0206
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 205,584 + -1.7 205,585 + +0.2 205,641 + Synpcc7942_0204 0.13 -2.2 205,649 - Synpcc7942_0204 0.14 +0.8 205,652 + Synpcc7942_0204 0.15 -3.4 205,663 + Synpcc7942_0204 0.17 +0.9 205,676 + Synpcc7942_0204 0.20 +0.1 205,703 - Synpcc7942_0204 0.26 +0.2 205,719 + Synpcc7942_0204 0.29 +2.5 205,732 - Synpcc7942_0204 0.32 +1.1 205,752 + Synpcc7942_0204 0.37 +1.4 205,789 + Synpcc7942_0204 0.45 -3.1 205,789 + Synpcc7942_0204 0.45 +0.7 205,803 + Synpcc7942_0204 0.48 +0.9 205,872 - Synpcc7942_0204 0.62 +0.3 205,893 + Synpcc7942_0204 0.67 -0.8 205,913 - Synpcc7942_0204 0.71 +1.8 205,939 - Synpcc7942_0204 0.77 -0.3 205,956 + Synpcc7942_0204 0.80 +0.2 205,966 + Synpcc7942_0204 0.83 +0.4 205,966 + Synpcc7942_0204 0.83 -0.6 205,992 + -1.1 206,000 - -2.8 206,003 + +1.8 206,072 - +3.1 206,084 + -2.9 206,092 - -1.7 206,133 - -1.7 206,164 - -1.7 206,263 + -1.7 206,371 + Synpcc7942_0205 0.17 -2.9 206,446 - Synpcc7942_0205 0.24 -0.1 206,550 - Synpcc7942_0205 0.35 -2.9 206,608 - Synpcc7942_0205 0.40 -1.9 206,637 + Synpcc7942_0205 0.43 -4.0 206,686 + Synpcc7942_0205 0.48 -3.8 206,772 - Synpcc7942_0205 0.56 -4.2 206,906 + Synpcc7942_0205 0.70 -1.7 207,229 + -3.4 207,229 + -0.1 207,229 + -1.8 207,237 - -3.7 207,237 - -1.7 207,237 - -2.4 207,261 + -5.6 207,300 + -3.2 207,300 + -3.2 207,317 - -2.1 207,333 + -1.7 207,393 + +1.4 207,413 - +2.2 207,427 + +0.4 207,512 - Synpcc7942_0206 0.11 +0.0 207,530 + Synpcc7942_0206 0.12 +1.5 207,568 + Synpcc7942_0206 0.15 -3.1 207,576 + Synpcc7942_0206 0.15 -2.4 207,586 + Synpcc7942_0206 0.16 +1.9 207,659 + Synpcc7942_0206 0.21 -2.1 207,659 + Synpcc7942_0206 0.21 -3.4 207,659 + Synpcc7942_0206 0.21 -1.4 207,667 - Synpcc7942_0206 0.22 +1.5 207,667 - Synpcc7942_0206 0.22 +1.2 207,668 - Synpcc7942_0206 0.22 -1.1 207,672 + Synpcc7942_0206 0.22 -1.7 207,672 + Synpcc7942_0206 0.22 +4.1 207,672 + Synpcc7942_0206 0.22 -0.1 207,686 + Synpcc7942_0206 0.23 +0.0 207,692 + Synpcc7942_0206 0.24 +4.2 207,717 + Synpcc7942_0206 0.26 +1.0 207,717 + Synpcc7942_0206 0.26 +0.5 207,725 - Synpcc7942_0206 0.26 +0.8 207,727 + Synpcc7942_0206 0.26 -0.1 207,741 + Synpcc7942_0206 0.27 -0.5 207,753 + Synpcc7942_0206 0.28 +1.6 207,753 + Synpcc7942_0206 0.28 +1.3 207,761 - Synpcc7942_0206 0.29 +0.9 207,761 - Synpcc7942_0206 0.29 -1.8 207,763 - Synpcc7942_0206 0.29 +0.2 207,766 + Synpcc7942_0206 0.29 -1.4 207,783 - Synpcc7942_0206 0.30 -1.1 207,789 - Synpcc7942_0206 0.31 -0.7 207,899 + Synpcc7942_0206 0.39 +0.5 207,980 - Synpcc7942_0206 0.44 -0.1 207,989 - Synpcc7942_0206 0.45 +0.3 208,082 - Synpcc7942_0206 0.52 +1.3 208,146 + Synpcc7942_0206 0.56 -0.1 208,182 - Synpcc7942_0206 0.59 -0.1
Or see this region's nucleotide sequence