Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0205

Experiment: Ceftazidime 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntribD and Synpcc7942_0204 overlap by 8 nucleotidesSynpcc7942_0204 and Synpcc7942_0205 are separated by 151 nucleotidesSynpcc7942_0205 and Synpcc7942_0206 are separated by 147 nucleotides Synpcc7942_0203: ribD - 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 204,483 to 205,589 ribD Synpcc7942_0204: Synpcc7942_0204 - hypothetical protein, at 205,582 to 206,046 _0204 Synpcc7942_0205: Synpcc7942_0205 - nicotinamide-nucleotide adenylyltransferase, at 206,198 to 207,214 _0205 Synpcc7942_0206: Synpcc7942_0206 - hypothetical protein, at 207,362 to 208,750 _0206 Position (kb) 206 207 208Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 205.584 kb on + strandat 205.585 kb on + strandat 205.641 kb on + strand, within Synpcc7942_0204at 205.649 kb on - strand, within Synpcc7942_0204at 205.652 kb on + strand, within Synpcc7942_0204at 205.663 kb on + strand, within Synpcc7942_0204at 205.676 kb on + strand, within Synpcc7942_0204at 205.703 kb on - strand, within Synpcc7942_0204at 205.719 kb on + strand, within Synpcc7942_0204at 205.732 kb on - strand, within Synpcc7942_0204at 205.752 kb on + strand, within Synpcc7942_0204at 205.789 kb on + strand, within Synpcc7942_0204at 205.789 kb on + strand, within Synpcc7942_0204at 205.803 kb on + strand, within Synpcc7942_0204at 205.872 kb on - strand, within Synpcc7942_0204at 205.893 kb on + strand, within Synpcc7942_0204at 205.913 kb on - strand, within Synpcc7942_0204at 205.939 kb on - strand, within Synpcc7942_0204at 205.956 kb on + strand, within Synpcc7942_0204at 205.966 kb on + strand, within Synpcc7942_0204at 205.966 kb on + strand, within Synpcc7942_0204at 205.992 kb on + strandat 206.000 kb on - strandat 206.003 kb on + strandat 206.072 kb on - strandat 206.084 kb on + strandat 206.092 kb on - strandat 206.133 kb on - strandat 206.164 kb on - strandat 206.263 kb on + strandat 206.371 kb on + strand, within Synpcc7942_0205at 206.446 kb on - strand, within Synpcc7942_0205at 206.550 kb on - strand, within Synpcc7942_0205at 206.608 kb on - strand, within Synpcc7942_0205at 206.637 kb on + strand, within Synpcc7942_0205at 206.686 kb on + strand, within Synpcc7942_0205at 206.772 kb on - strand, within Synpcc7942_0205at 206.906 kb on + strand, within Synpcc7942_0205at 207.229 kb on + strandat 207.229 kb on + strandat 207.229 kb on + strandat 207.237 kb on - strandat 207.237 kb on - strandat 207.237 kb on - strandat 207.261 kb on + strandat 207.300 kb on + strandat 207.300 kb on + strandat 207.317 kb on - strandat 207.333 kb on + strandat 207.393 kb on + strandat 207.413 kb on - strandat 207.427 kb on + strandat 207.512 kb on - strand, within Synpcc7942_0206at 207.530 kb on + strand, within Synpcc7942_0206at 207.568 kb on + strand, within Synpcc7942_0206at 207.576 kb on + strand, within Synpcc7942_0206at 207.586 kb on + strand, within Synpcc7942_0206at 207.659 kb on + strand, within Synpcc7942_0206at 207.659 kb on + strand, within Synpcc7942_0206at 207.659 kb on + strand, within Synpcc7942_0206at 207.667 kb on - strand, within Synpcc7942_0206at 207.667 kb on - strand, within Synpcc7942_0206at 207.668 kb on - strand, within Synpcc7942_0206at 207.672 kb on + strand, within Synpcc7942_0206at 207.672 kb on + strand, within Synpcc7942_0206at 207.672 kb on + strand, within Synpcc7942_0206at 207.686 kb on + strand, within Synpcc7942_0206at 207.692 kb on + strand, within Synpcc7942_0206at 207.717 kb on + strand, within Synpcc7942_0206at 207.717 kb on + strand, within Synpcc7942_0206at 207.725 kb on - strand, within Synpcc7942_0206at 207.727 kb on + strand, within Synpcc7942_0206at 207.741 kb on + strand, within Synpcc7942_0206at 207.753 kb on + strand, within Synpcc7942_0206at 207.753 kb on + strand, within Synpcc7942_0206at 207.761 kb on - strand, within Synpcc7942_0206at 207.761 kb on - strand, within Synpcc7942_0206at 207.763 kb on - strand, within Synpcc7942_0206at 207.766 kb on + strand, within Synpcc7942_0206at 207.783 kb on - strand, within Synpcc7942_0206at 207.789 kb on - strand, within Synpcc7942_0206at 207.899 kb on + strand, within Synpcc7942_0206at 207.980 kb on - strand, within Synpcc7942_0206at 207.989 kb on - strand, within Synpcc7942_0206at 208.082 kb on - strand, within Synpcc7942_0206at 208.146 kb on + strand, within Synpcc7942_0206at 208.182 kb on - strand, within Synpcc7942_0206

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml
remove
205,584 + -1.7
205,585 + +0.2
205,641 + Synpcc7942_0204 0.13 -2.2
205,649 - Synpcc7942_0204 0.14 +0.8
205,652 + Synpcc7942_0204 0.15 -3.4
205,663 + Synpcc7942_0204 0.17 +0.9
205,676 + Synpcc7942_0204 0.20 +0.1
205,703 - Synpcc7942_0204 0.26 +0.2
205,719 + Synpcc7942_0204 0.29 +2.5
205,732 - Synpcc7942_0204 0.32 +1.1
205,752 + Synpcc7942_0204 0.37 +1.4
205,789 + Synpcc7942_0204 0.45 -3.1
205,789 + Synpcc7942_0204 0.45 +0.7
205,803 + Synpcc7942_0204 0.48 +0.9
205,872 - Synpcc7942_0204 0.62 +0.3
205,893 + Synpcc7942_0204 0.67 -0.8
205,913 - Synpcc7942_0204 0.71 +1.8
205,939 - Synpcc7942_0204 0.77 -0.3
205,956 + Synpcc7942_0204 0.80 +0.2
205,966 + Synpcc7942_0204 0.83 +0.4
205,966 + Synpcc7942_0204 0.83 -0.6
205,992 + -1.1
206,000 - -2.8
206,003 + +1.8
206,072 - +3.1
206,084 + -2.9
206,092 - -1.7
206,133 - -1.7
206,164 - -1.7
206,263 + -1.7
206,371 + Synpcc7942_0205 0.17 -2.9
206,446 - Synpcc7942_0205 0.24 -0.1
206,550 - Synpcc7942_0205 0.35 -2.9
206,608 - Synpcc7942_0205 0.40 -1.9
206,637 + Synpcc7942_0205 0.43 -4.0
206,686 + Synpcc7942_0205 0.48 -3.8
206,772 - Synpcc7942_0205 0.56 -4.2
206,906 + Synpcc7942_0205 0.70 -1.7
207,229 + -3.4
207,229 + -0.1
207,229 + -1.8
207,237 - -3.7
207,237 - -1.7
207,237 - -2.4
207,261 + -5.6
207,300 + -3.2
207,300 + -3.2
207,317 - -2.1
207,333 + -1.7
207,393 + +1.4
207,413 - +2.2
207,427 + +0.4
207,512 - Synpcc7942_0206 0.11 +0.0
207,530 + Synpcc7942_0206 0.12 +1.5
207,568 + Synpcc7942_0206 0.15 -3.1
207,576 + Synpcc7942_0206 0.15 -2.4
207,586 + Synpcc7942_0206 0.16 +1.9
207,659 + Synpcc7942_0206 0.21 -2.1
207,659 + Synpcc7942_0206 0.21 -3.4
207,659 + Synpcc7942_0206 0.21 -1.4
207,667 - Synpcc7942_0206 0.22 +1.5
207,667 - Synpcc7942_0206 0.22 +1.2
207,668 - Synpcc7942_0206 0.22 -1.1
207,672 + Synpcc7942_0206 0.22 -1.7
207,672 + Synpcc7942_0206 0.22 +4.1
207,672 + Synpcc7942_0206 0.22 -0.1
207,686 + Synpcc7942_0206 0.23 +0.0
207,692 + Synpcc7942_0206 0.24 +4.2
207,717 + Synpcc7942_0206 0.26 +1.0
207,717 + Synpcc7942_0206 0.26 +0.5
207,725 - Synpcc7942_0206 0.26 +0.8
207,727 + Synpcc7942_0206 0.26 -0.1
207,741 + Synpcc7942_0206 0.27 -0.5
207,753 + Synpcc7942_0206 0.28 +1.6
207,753 + Synpcc7942_0206 0.28 +1.3
207,761 - Synpcc7942_0206 0.29 +0.9
207,761 - Synpcc7942_0206 0.29 -1.8
207,763 - Synpcc7942_0206 0.29 +0.2
207,766 + Synpcc7942_0206 0.29 -1.4
207,783 - Synpcc7942_0206 0.30 -1.1
207,789 - Synpcc7942_0206 0.31 -0.7
207,899 + Synpcc7942_0206 0.39 +0.5
207,980 - Synpcc7942_0206 0.44 -0.1
207,989 - Synpcc7942_0206 0.45 +0.3
208,082 - Synpcc7942_0206 0.52 +1.3
208,146 + Synpcc7942_0206 0.56 -0.1
208,182 - Synpcc7942_0206 0.59 -0.1

Or see this region's nucleotide sequence