Experiment: Ceftazidime 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0057 and rfbC overlap by 4 nucleotides rfbC and Synpcc7942_0059 are separated by 20 nucleotides Synpcc7942_0059 and Synpcc7942_0060 overlap by 22 nucleotides Synpcc7942_0060 and rfbG overlap by 4 nucleotides
Synpcc7942_0057: Synpcc7942_0057 - putative C-3 methyl transferase, at 59,072 to 60,304
_0057
Synpcc7942_0058: rfbC - dTDP-4-dehydrorhamnose 3,5-epimerase, at 60,301 to 60,846
rfbC
Synpcc7942_0059: Synpcc7942_0059 - hypothetical protein, at 60,867 to 61,112
_0059
Synpcc7942_0060: Synpcc7942_0060 - hypothetical protein, at 61,091 to 61,369
_0060
Synpcc7942_0061: rfbG - CDP-glucose 4,6-dehydratase, at 61,366 to 62,472
rfbG
Position (kb) 61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 60.102 kb on + strand, within Synpcc7942_0057 at 60.102 kb on + strand, within Synpcc7942_0057 at 60.105 kb on + strand, within Synpcc7942_0057 at 60.110 kb on - strand, within Synpcc7942_0057 at 60.140 kb on + strand, within Synpcc7942_0057 at 60.140 kb on + strand, within Synpcc7942_0057 at 60.147 kb on + strand, within Synpcc7942_0057 at 60.147 kb on + strand, within Synpcc7942_0057 at 60.172 kb on - strand, within Synpcc7942_0057 at 60.173 kb on - strand, within Synpcc7942_0057 at 60.174 kb on - strand, within Synpcc7942_0057 at 60.180 kb on + strand, within Synpcc7942_0057 at 60.193 kb on - strand at 60.198 kb on - strand at 60.238 kb on - strand at 60.274 kb on + strand at 60.328 kb on - strand at 60.345 kb on + strand at 60.345 kb on + strand at 60.345 kb on + strand at 60.345 kb on + strand at 60.348 kb on - strand at 60.353 kb on - strand at 60.378 kb on + strand, within rfbC at 60.386 kb on - strand, within rfbC at 60.396 kb on - strand, within rfbC at 60.436 kb on - strand, within rfbC at 60.468 kb on + strand, within rfbC at 60.476 kb on - strand, within rfbC at 60.496 kb on + strand, within rfbC at 60.506 kb on + strand, within rfbC at 60.512 kb on - strand, within rfbC at 60.514 kb on - strand, within rfbC at 60.514 kb on - strand, within rfbC at 60.514 kb on - strand, within rfbC at 60.516 kb on + strand, within rfbC at 60.555 kb on - strand, within rfbC at 60.573 kb on + strand, within rfbC at 60.587 kb on + strand, within rfbC at 60.587 kb on + strand, within rfbC at 60.589 kb on - strand, within rfbC at 60.595 kb on - strand, within rfbC at 60.595 kb on - strand, within rfbC at 60.621 kb on + strand, within rfbC at 60.629 kb on - strand, within rfbC at 60.666 kb on + strand, within rfbC at 60.682 kb on - strand, within rfbC at 60.688 kb on - strand, within rfbC at 60.696 kb on - strand, within rfbC at 60.704 kb on + strand, within rfbC at 60.712 kb on - strand, within rfbC at 60.716 kb on + strand, within rfbC at 60.724 kb on - strand, within rfbC at 60.724 kb on - strand, within rfbC at 60.724 kb on - strand, within rfbC at 60.813 kb on - strand at 60.818 kb on - strand at 60.835 kb on - strand at 60.953 kb on + strand, within Synpcc7942_0059 at 60.961 kb on - strand, within Synpcc7942_0059 at 60.975 kb on - strand, within Synpcc7942_0059 at 60.996 kb on - strand, within Synpcc7942_0059 at 61.050 kb on - strand, within Synpcc7942_0059 at 61.058 kb on - strand, within Synpcc7942_0059 at 61.083 kb on - strand, within Synpcc7942_0059 at 61.119 kb on + strand, within Synpcc7942_0060 at 61.208 kb on - strand, within Synpcc7942_0060 at 61.225 kb on + strand, within Synpcc7942_0060 at 61.270 kb on - strand, within Synpcc7942_0060 at 61.282 kb on + strand, within Synpcc7942_0060 at 61.290 kb on - strand, within Synpcc7942_0060 at 61.295 kb on - strand, within Synpcc7942_0060 at 61.317 kb on + strand, within Synpcc7942_0060 at 61.361 kb on - strand at 61.362 kb on - strand at 61.371 kb on - strand at 61.387 kb on + strand at 61.388 kb on - strand at 61.389 kb on + strand at 61.395 kb on - strand at 61.400 kb on + strand at 61.431 kb on - strand at 61.442 kb on - strand at 61.459 kb on - strand at 61.492 kb on + strand, within rfbG at 61.492 kb on + strand, within rfbG at 61.498 kb on + strand, within rfbG at 61.541 kb on - strand, within rfbG at 61.543 kb on + strand, within rfbG at 61.548 kb on + strand, within rfbG at 61.578 kb on + strand, within rfbG at 61.578 kb on + strand, within rfbG at 61.586 kb on - strand, within rfbG at 61.599 kb on - strand, within rfbG at 61.601 kb on + strand, within rfbG at 61.609 kb on - strand, within rfbG at 61.634 kb on - strand, within rfbG at 61.635 kb on + strand, within rfbG at 61.658 kb on - strand, within rfbG at 61.667 kb on + strand, within rfbG at 61.693 kb on + strand, within rfbG at 61.703 kb on - strand, within rfbG at 61.723 kb on + strand, within rfbG at 61.733 kb on + strand, within rfbG at 61.733 kb on - strand, within rfbG at 61.764 kb on + strand, within rfbG at 61.764 kb on + strand, within rfbG at 61.812 kb on - strand, within rfbG at 61.812 kb on - strand, within rfbG at 61.814 kb on + strand, within rfbG at 61.845 kb on - strand, within rfbG at 61.847 kb on + strand, within rfbG at 61.850 kb on + strand, within rfbG at 61.855 kb on - strand, within rfbG at 61.855 kb on - strand, within rfbG at 61.954 kb on + strand, within rfbG at 61.960 kb on + strand, within rfbG at 61.960 kb on + strand, within rfbG at 61.970 kb on + strand, within rfbG at 61.970 kb on + strand, within rfbG at 61.978 kb on - strand, within rfbG at 61.982 kb on + strand, within rfbG at 61.984 kb on + strand, within rfbG at 61.984 kb on + strand, within rfbG at 61.990 kb on + strand, within rfbG at 61.990 kb on - strand, within rfbG at 61.990 kb on - strand, within rfbG at 61.992 kb on - strand, within rfbG at 62.025 kb on + strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.060 kb on - strand, within rfbG at 62.060 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.096 kb on + strand, within rfbG at 62.115 kb on + strand, within rfbG at 62.130 kb on + strand, within rfbG at 62.147 kb on + strand, within rfbG at 62.170 kb on - strand, within rfbG at 62.176 kb on + strand, within rfbG at 62.184 kb on - strand, within rfbG at 62.184 kb on - strand, within rfbG at 62.195 kb on + strand, within rfbG at 62.203 kb on - strand, within rfbG at 62.205 kb on - strand, within rfbG at 62.205 kb on - strand, within rfbG at 62.231 kb on - strand, within rfbG at 62.236 kb on + strand, within rfbG at 62.249 kb on + strand, within rfbG at 62.284 kb on + strand, within rfbG at 62.314 kb on + strand, within rfbG at 62.314 kb on + strand, within rfbG at 62.314 kb on + strand, within rfbG at 62.314 kb on + strand at 62.314 kb on + strand, within rfbG at 62.314 kb on + strand, within rfbG at 62.322 kb on - strand, within rfbG at 62.329 kb on - strand, within rfbG at 62.338 kb on + strand, within rfbG at 62.355 kb on + strand, within rfbG
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.0625 mg/ml remove 60,102 + Synpcc7942_0057 0.84 -1.7 60,102 + Synpcc7942_0057 0.84 +0.8 60,105 + Synpcc7942_0057 0.84 +0.7 60,110 - Synpcc7942_0057 0.84 -0.4 60,140 + Synpcc7942_0057 0.87 -0.1 60,140 + Synpcc7942_0057 0.87 +0.5 60,147 + Synpcc7942_0057 0.87 +0.6 60,147 + Synpcc7942_0057 0.87 -1.1 60,172 - Synpcc7942_0057 0.89 -0.2 60,173 - Synpcc7942_0057 0.89 +0.2 60,174 - Synpcc7942_0057 0.89 +0.9 60,180 + Synpcc7942_0057 0.90 +0.2 60,193 - -2.2 60,198 - +1.7 60,238 - -1.1 60,274 + +0.0 60,328 - -0.7 60,345 + -2.1 60,345 + +1.5 60,345 + -1.1 60,345 + +3.1 60,348 - +1.1 60,353 - -2.7 60,378 + rfbC Synpcc7942_0058 0.14 -2.4 60,386 - rfbC Synpcc7942_0058 0.16 -0.7 60,396 - rfbC Synpcc7942_0058 0.17 +1.5 60,436 - rfbC Synpcc7942_0058 0.25 -2.1 60,468 + rfbC Synpcc7942_0058 0.31 +3.1 60,476 - rfbC Synpcc7942_0058 0.32 +0.2 60,496 + rfbC Synpcc7942_0058 0.36 -1.7 60,506 + rfbC Synpcc7942_0058 0.38 +1.4 60,512 - rfbC Synpcc7942_0058 0.39 -0.1 60,514 - rfbC Synpcc7942_0058 0.39 -0.1 60,514 - rfbC Synpcc7942_0058 0.39 -1.1 60,514 - rfbC Synpcc7942_0058 0.39 +1.1 60,516 + rfbC Synpcc7942_0058 0.39 -2.0 60,555 - rfbC Synpcc7942_0058 0.47 -1.1 60,573 + rfbC Synpcc7942_0058 0.50 +0.9 60,587 + rfbC Synpcc7942_0058 0.52 -1.7 60,587 + rfbC Synpcc7942_0058 0.52 +1.4 60,589 - rfbC Synpcc7942_0058 0.53 +0.4 60,595 - rfbC Synpcc7942_0058 0.54 -0.0 60,595 - rfbC Synpcc7942_0058 0.54 +2.5 60,621 + rfbC Synpcc7942_0058 0.59 -2.9 60,629 - rfbC Synpcc7942_0058 0.60 -0.3 60,666 + rfbC Synpcc7942_0058 0.67 -0.1 60,682 - rfbC Synpcc7942_0058 0.70 +0.4 60,688 - rfbC Synpcc7942_0058 0.71 +0.7 60,696 - rfbC Synpcc7942_0058 0.72 +0.4 60,704 + rfbC Synpcc7942_0058 0.74 -1.7 60,712 - rfbC Synpcc7942_0058 0.75 +1.7 60,716 + rfbC Synpcc7942_0058 0.76 +1.2 60,724 - rfbC Synpcc7942_0058 0.77 -2.9 60,724 - rfbC Synpcc7942_0058 0.77 -0.3 60,724 - rfbC Synpcc7942_0058 0.77 -1.1 60,813 - +1.4 60,818 - +3.8 60,835 - +1.0 60,953 + Synpcc7942_0059 0.35 -2.4 60,961 - Synpcc7942_0059 0.38 +2.1 60,975 - Synpcc7942_0059 0.44 -2.1 60,996 - Synpcc7942_0059 0.52 -1.1 61,050 - Synpcc7942_0059 0.74 -1.7 61,058 - Synpcc7942_0059 0.78 -2.9 61,083 - Synpcc7942_0059 0.88 +1.2 61,119 + Synpcc7942_0060 0.10 +0.6 61,208 - Synpcc7942_0060 0.42 +2.2 61,225 + Synpcc7942_0060 0.48 +1.5 61,270 - Synpcc7942_0060 0.64 +0.1 61,282 + Synpcc7942_0060 0.68 +1.5 61,290 - Synpcc7942_0060 0.71 +1.3 61,295 - Synpcc7942_0060 0.73 +0.8 61,317 + Synpcc7942_0060 0.81 -0.1 61,361 - -1.7 61,362 - +1.5 61,371 - -1.1 61,387 + -0.6 61,388 - -0.1 61,389 + -0.8 61,395 - -1.1 61,400 + +0.9 61,431 - +0.5 61,442 - +0.8 61,459 - +0.6 61,492 + rfbG Synpcc7942_0061 0.11 -2.9 61,492 + rfbG Synpcc7942_0061 0.11 -0.8 61,498 + rfbG Synpcc7942_0061 0.12 +0.1 61,541 - rfbG Synpcc7942_0061 0.16 +2.1 61,543 + rfbG Synpcc7942_0061 0.16 +0.8 61,548 + rfbG Synpcc7942_0061 0.16 -0.1 61,578 + rfbG Synpcc7942_0061 0.19 +1.7 61,578 + rfbG Synpcc7942_0061 0.19 -0.7 61,586 - rfbG Synpcc7942_0061 0.20 +2.7 61,599 - rfbG Synpcc7942_0061 0.21 -0.4 61,601 + rfbG Synpcc7942_0061 0.21 -1.5 61,609 - rfbG Synpcc7942_0061 0.22 -0.7 61,634 - rfbG Synpcc7942_0061 0.24 +1.6 61,635 + rfbG Synpcc7942_0061 0.24 +1.1 61,658 - rfbG Synpcc7942_0061 0.26 +0.5 61,667 + rfbG Synpcc7942_0061 0.27 +1.4 61,693 + rfbG Synpcc7942_0061 0.30 +1.9 61,703 - rfbG Synpcc7942_0061 0.30 +0.9 61,723 + rfbG Synpcc7942_0061 0.32 +1.1 61,733 + rfbG Synpcc7942_0061 0.33 -0.3 61,733 - rfbG Synpcc7942_0061 0.33 +0.1 61,764 + rfbG Synpcc7942_0061 0.36 -0.4 61,764 + rfbG Synpcc7942_0061 0.36 +2.1 61,812 - rfbG Synpcc7942_0061 0.40 -0.2 61,812 - rfbG Synpcc7942_0061 0.40 -1.8 61,814 + rfbG Synpcc7942_0061 0.40 +2.2 61,845 - rfbG Synpcc7942_0061 0.43 +1.3 61,847 + rfbG Synpcc7942_0061 0.43 -0.4 61,850 + rfbG Synpcc7942_0061 0.44 +1.0 61,855 - rfbG Synpcc7942_0061 0.44 +1.9 61,855 - rfbG Synpcc7942_0061 0.44 +1.7 61,954 + rfbG Synpcc7942_0061 0.53 -1.1 61,960 + rfbG Synpcc7942_0061 0.54 +0.4 61,960 + rfbG Synpcc7942_0061 0.54 -1.4 61,970 + rfbG Synpcc7942_0061 0.55 +0.9 61,970 + rfbG Synpcc7942_0061 0.55 -0.8 61,978 - rfbG Synpcc7942_0061 0.55 -1.4 61,982 + rfbG Synpcc7942_0061 0.56 -1.7 61,984 + rfbG Synpcc7942_0061 0.56 +0.3 61,984 + rfbG Synpcc7942_0061 0.56 +0.9 61,990 + rfbG Synpcc7942_0061 0.56 -1.1 61,990 - rfbG Synpcc7942_0061 0.56 +1.0 61,990 - rfbG Synpcc7942_0061 0.56 -0.5 61,992 - rfbG Synpcc7942_0061 0.57 +0.9 62,025 + rfbG Synpcc7942_0061 0.60 +0.7 62,031 - rfbG Synpcc7942_0061 0.60 +0.2 62,031 - rfbG Synpcc7942_0061 0.60 +0.7 62,031 - rfbG Synpcc7942_0061 0.60 +0.4 62,060 - rfbG Synpcc7942_0061 0.63 +1.0 62,060 - rfbG Synpcc7942_0061 0.63 +0.8 62,086 - rfbG Synpcc7942_0061 0.65 -3.2 62,086 - rfbG Synpcc7942_0061 0.65 +1.9 62,086 - rfbG Synpcc7942_0061 0.65 -0.3 62,086 - rfbG Synpcc7942_0061 0.65 +0.4 62,096 + rfbG Synpcc7942_0061 0.66 -2.3 62,115 + rfbG Synpcc7942_0061 0.68 +0.4 62,130 + rfbG Synpcc7942_0061 0.69 +0.9 62,147 + rfbG Synpcc7942_0061 0.71 -3.5 62,170 - rfbG Synpcc7942_0061 0.73 -2.2 62,176 + rfbG Synpcc7942_0061 0.73 +3.7 62,184 - rfbG Synpcc7942_0061 0.74 -0.1 62,184 - rfbG Synpcc7942_0061 0.74 -0.3 62,195 + rfbG Synpcc7942_0061 0.75 +0.2 62,203 - rfbG Synpcc7942_0061 0.76 -1.4 62,205 - rfbG Synpcc7942_0061 0.76 -1.5 62,205 - rfbG Synpcc7942_0061 0.76 +2.1 62,231 - rfbG Synpcc7942_0061 0.78 +1.3 62,236 + rfbG Synpcc7942_0061 0.79 -1.0 62,249 + rfbG Synpcc7942_0061 0.80 -1.7 62,284 + rfbG Synpcc7942_0061 0.83 -0.5 62,314 + rfbG Synpcc7942_0061 0.86 +0.2 62,314 + rfbG Synpcc7942_0061 0.86 +1.5 62,314 + rfbG Synpcc7942_0061 0.86 +0.7 62,314 + -1.1 62,314 + rfbG Synpcc7942_0061 0.86 +1.6 62,314 + rfbG Synpcc7942_0061 0.86 +0.3 62,322 - rfbG Synpcc7942_0061 0.86 +1.4 62,329 - rfbG Synpcc7942_0061 0.87 -1.7 62,338 + rfbG Synpcc7942_0061 0.88 -1.1 62,355 + rfbG Synpcc7942_0061 0.89 +0.9
Or see this region's nucleotide sequence